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Date: Sat, 03 Apr 2021 11:41:14 -0400
From: Jack <ostroffjh@users.sourceforge.net>
Subject: Re: [gentoo-user] emerge failure for dev-lang/R-4.0.4
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On 2021.04.03 07:15, karl@aspodata.se wrote:
> Is there a way to run emerge step by step to find out why it fails ?
>=20
> ///
>=20
> I get this:
> make[1]: Entering directory =20
> '/Net/gentoo/tmpdir/portage/dev-lang/R-4.0.4/work/R-4.0.4/doc'
> make[1]: Leaving directory =20
> '/Net/gentoo/tmpdir/portage/dev-lang/R-4.0.4/work/R-4.0.4'
> help2man: can't get `--version' info from ../bin/R
> make[1]: *** [Makefile:46: R.1] Error 255
> make[1]: *** Waiting for unfinished jobs....
Try running with -j1
> Error: package or namespace load failed for ?<80><98>methods?<80><99>:
> .onLoad failed in loadNamespace() for 'methods', details:
> call: (function (n)
> error: lazy-load database =20
> '/Net/gentoo/tmpdir/portage/dev-lang/R-4.0.4/work/R-4.0.4/library/methods=
/R/methods.rdb' =20
> is corrupt
> During startup - Warning messages:
> 1: In (function (n) : internal error -4 in R_decompress1
> 2: package "methods" in options("defaultPackages") was not found
> make[1]: Leaving directory =20
> '/Net/gentoo/tmpdir/portage/dev-lang/R-4.0.4/work/R-4.0.4/doc'
>=20
> but ../bin/R --version works:
> # cd /Net/gentoo/tmpdir/portage/dev-lang/R-4.0.4/work/R-4.0.4/doc
> # ../bin/R --version
> WARNING: ignoring environment value of R_HOME
> R version 4.0.4 (2021-02-15) -- "Lost Library Book"
> Copyright (C) 2021 The R Foundation for Statistical Computing
> Platform: x86_64-pc-linux-gnu (64-bit)
>=20
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under the terms of the
> GNU General Public License versions 2 or 3.
> For more information about these matters see
> https://www.gnu.org/licenses/.
>=20
> #
>=20
> ///
>=20
> I also get segfault:
> begin installing recommended package MASS
> begin installing recommended package lattice
> Segmentation fault
> make[2]: *** [Makefile:53: MASS.ts] Error 1
> make[2]: *** Waiting for unfinished jobs....
> * installing *source* package ?<80><98>codetools?<80><99> ...
> ** package ?<80><98>codetools?<80><99> successfully unpacked and MD5 =20
> sums checked
> ** using non-staged installation
>=20
> ///
>=20
> Full build log is here:
> http://aspodata.se/tmp/build.log
>=20
> Regards,
> /Karl Hammar
>=20
>=20
>=20