[gentoo-user] sci-libs/spqr-1.2.3-r1 failed to emerge

[gevisz <gevisz@gmail.com>]

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I've tried to install julia-1.4.0 but one of its dependencies, namely,
sci-libs/spqr-1.2.3-r1 failed to emerge with the following error message:

* Failed Running automake !
 *
 * Include in your bugreport the contents of:
 *
 *   /var/tmp/portage/sci-libs/spqr-1.2.3-r1/temp/automake.out

 * ERROR: sci-libs/spqr-1.2.3-r1::gentoo failed (prepare phase):
 *   Failed Running automake !
 *
 * Call stack:
 *     ebuild.sh, line  125:  Called src_prepare
 *   environment, line 2324:  Called autotools-utils_src_prepare
 *   environment, line  512:  Called eautoreconf
 *   environment, line  830:  Called eautomake
 *   environment, line  784:  Called autotools_run_tool 'automake'
'--add-missing' '--copy' '--foreign' '--force-missing'
 *   environment, line  648:  Called die
 * The specific snippet of code:
 *           die "Failed Running $1 !";
 *
 * If you need support, post the output of `emerge --info
'=sci-libs/spqr-1.2.3-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv
'=sci-libs/spqr-1.2.3-r1::gentoo'`.
 * The complete build log is located at
'/var/log/portage/sci-libs:spqr-1.2.3-r1:20200408-071552.log'.
 * The ebuild environment file is located at
'/var/tmp/portage/sci-libs/spqr-1.2.3-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/spqr-1.2.3-r1/work/SPQR'
 * S: '/var/tmp/portage/sci-libs/spqr-1.2.3-r1/work/SPQR'

>>> Failed to emerge sci-libs/spqr-1.2.3-r1, Log file:  '/var/log/portage/sci-libs:spqr-1.2.3-r1:20200408-071552.log'

I tried to look into the automake.out file mentioned above but it even
does not exists (or empty).

The log file is attached. The output of emerge --info
'=sci-libs/spqr-1.2.3-r1::gentoo' is as follows:
# emerge --info '=sci-libs/spqr-1.2.3-r1::gentoo'
Portage 2.3.89 (python 3.6.10-final-0,
default/linux/amd64/17.1/desktop, gcc-9.2.0, glibc-2.29-r7,
4.19.86-gentoo+ x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.19.86-gentoo+-x86_64-AMD_Phenom-tm-_II_X4_945_Processor-with-gentoo-2.6
KiB Mem:    20554020 total,  12064808 free
KiB Swap:   11718652 total,  11718652 free
Timestamp of repository gentoo: Tue, 07 Apr 2020 00:45:01 +0000
sh bash 4.4_p23-r1
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          4.4_p23-r1::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.17-r2::gentoo, 3.6.10-r1::gentoo, 3.7.7-r1::gentoo
dev-util/cmake:           3.16.5::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.16.1-r1::gentoo
sys-devel/binutils:       2.32-r1::gentoo, 2.33.1-r1::gentoo
sys-devel/gcc:            9.2.0-r2::gentoo
sys-devel/gcc-config:     2.2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r7::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: webrsync
    sync-uri: "http://mirror.netcologne.de/gentoo/"
    priority: -1000
    sync-webrsync-verify-signature: yes

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb/symbols/ /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d
/etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release
/etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--ask --fail-clean"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT
PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME
XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs
config-protect-if-modified distlocks ebuild-locks fail-clean
fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news
parallel-fetch pid-sandbox preserve-libs protect-owned
qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn
unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync
webrsync-gpg"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/
https://mirrors.lug.mtu.edu/gentoo http://de-mirror.org/gentoo/
http://www.mirrorservice.org/sites/distfiles.gentoo.org/
http://distfiles.gentoo.org
http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS=""
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
--omit-dir-times --compress --force --whole-file --delete --stats
--human-readable --timeout=180 --exclude=/distfiles --exclude=/local
--exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi alsa amd64 berkdb bzip2 cairo cdda cdr cli
crypt cups dbus dri dts dvd dvdr encode exif flac fortran gdbm gif gpm
gtk iconv icu jpeg lcms ldap libnotify libtirpc mad mng mp3 mp4 mpeg
multilib ncurses nptl ocamlopt ogg opengl openmp pango pcre pdf png
ppds qt5 readline sdl seccomp smp spell split-usr ssl
startup-notification svg tcpd tiff truetype udev udisks unicode upower
usb vorbis wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64"
ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem
bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801
hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx
via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core
socache_shmcb unixd actions alias auth_basic authn_alias authn_anon
authn_dbm authn_default authn_file authz_dbm authz_default
authz_groupfile authz_host authz_owner authz_user autoindex cache cgi
cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter
file_cache filter headers include info log_config logio mem_cache mime
mime_magic negotiation rewrite setenvif speling status unique_id
userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words"
COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
CPU_FLAGS_X86="3dnow 3dnowext mmx mmxext popcnt sse sse2 sse3 sse4a"
ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18
garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom
oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq
superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc"
INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text"
LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer"
OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2"
POSTGRES_TARGETS="postgres10 postgres11"
PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6"
RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="radeon r600"
XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset
ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat
logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL,
PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS,
PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[3]+  Done                    gvim
/var/tmp/portage/sci-libs/spqr-1.2.3-r1/temp/automake.out

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