Re: [gentoo-user] Re: sci-libs/spqr-1.2.3-r1 failed to emerge

[gevisz <gevisz@gmail.com>]

ср, 8 апр. 2020 г. в 17:19, gevisz <gevisz@gmail.com>:
>
> ср, 8 апр. 2020 г. в 13:29, Nuno Silva <nunojsilva@ist.utl.pt>:
> >
> > On 2020-04-08, gevisz wrote:
> >
> > > I've tried to install julia-1.4.0 but one of its dependencies, namely,
> > > sci-libs/spqr-1.2.3-r1 failed to emerge with the following error message:
> > >
> > > * Failed Running automake !
> > >  *
> > >  * Include in your bugreport the contents of:
> > >  *
> > >  *   /var/tmp/portage/sci-libs/spqr-1.2.3-r1/temp/automake.out
> > [...]
> > > I tried to look into the automake.out file mentioned above but it even
> > > does not exists (or empty).
> >
> >
> >
> > Could this be bug 586582? (But that one has an automake.out?)
> >
> > https://bugs.gentoo.org/show_bug.cgi?id=586582
> >
> > And see also: https://bugs.gentoo.org/show_bug.cgi?id=627094
> >
> > From a quick read, it looks like there is no fix for 1.2.3-r1, but that
> > the plan is to drop 1.2.3-r1 if 2.0.9 works.
> >
> Yes, unmasking
> =sci-libs/spqr-2.0.9
> which lead to unmasking
> =sci-libs/cholmod-3.0.13
> =sci-libs/amd-2.4.6
> =sci-libs/colamd-2.9.6
> =sci-libs/camd-2.4.6
> =sci-libs/ccolamd-2.9.6
> =sci-libs/suitesparseconfig-5.4.0
> =sci-libs/metis-5.1.0-r2
> allowed emerging spqr-2.0.9.

Anyway, it did not helped to emerge julia because of the following:

# emerge julia

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     UD ] sci-libs/cholmod-2.1.2 [3.0.13] USE="-lapack* -metis%
-minimal%"
[ebuild  N     ] sci-libs/umfpack-5.6.2  USE="cholmod -doc -static-libs"
[ebuild  N    ~] dev-lang/julia-1.4.0-r1

!!! Multiple package instances within a single package slot have been pulled
!!! into the dependency graph, resulting in a slot conflict:

sci-libs/cholmod:0

  (sci-libs/cholmod-3.0.13:0/0::gentoo, installed) USE="lapack
matrixops modify partition -cuda -doc -static-libs" ABI_X86="(64)"
pulled in by
    >=sci-libs/cholmod-2[lapack,partition?] required by
(sci-libs/spqr-2.0.9:0/0::gentoo, installed) USE="-doc -partition
-static-libs -tbb" ABI_X86="(64)"
                                ^^^^^^^^^^

  (sci-libs/cholmod-2.1.2:0/0::gentoo, ebuild scheduled for merge)
USE="(-cuda) -doc -lapack -metis -minimal -static-libs" ABI_X86="(64)"
pulled in by
    >=sci-libs/cholmod-2[-minimal] required by
(sci-libs/umfpack-5.6.2:0/0::gentoo, ebuild scheduled for merge)
USE="cholmod -doc -static-libs" ABI_X86="(64)"
                         ^^^^^^^^


It may be possible to solve this problem by using package.mask to
prevent one of those packages from being selected. However, it is also
possible that conflicting dependencies exist such that they are
impossible to satisfy simultaneously.  If such a conflict exists in
the dependencies of two different packages, then those packages can
not be installed simultaneously. You may want to try a larger value of
the --backtrack option, such as --backtrack=30, in order to see if
that will solve this conflict automatically.

For more information, see MASKED PACKAGES section in the emerge man
page or refer to the Gentoo Handbook.