From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from smtp.gentoo.org (woodpecker.gentoo.org [140.211.166.183]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by finch.gentoo.org (Postfix) with ESMTPS id 68B6C1580E0 for ; Thu, 30 Jan 2025 22:51:16 +0000 (UTC) Received: from lists.gentoo.org (bobolink.gentoo.org [140.211.166.189]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits)) (No client certificate requested) (Authenticated sender: relay-lists.gentoo.org@gentoo.org) by smtp.gentoo.org (Postfix) with ESMTPSA id 226EC343163 for ; Thu, 30 Jan 2025 22:51:16 +0000 (UTC) Received: from bobolink.gentoo.org (localhost [127.0.0.1]) by bobolink.gentoo.org (Postfix) with ESMTP id 9D2AF11047D; Thu, 30 Jan 2025 22:50:10 +0000 (UTC) Received: from mail-pj1-x1033.google.com (mail-pj1-x1033.google.com [IPv6:2607:f8b0:4864:20::1033]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by bobolink.gentoo.org (Postfix) with ESMTPS id 92ABC1103B6 for ; Thu, 30 Jan 2025 22:50:09 +0000 (UTC) Received: by mail-pj1-x1033.google.com with SMTP id 98e67ed59e1d1-2ef748105deso1827971a91.1 for ; Thu, 30 Jan 2025 14:50:09 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1738277408; x=1738882208; darn=lists.gentoo.org; h=content-transfer-encoding:to:subject:message-id:date:from :in-reply-to:references:mime-version:from:to:cc:subject:date :message-id:reply-to; bh=W79XCfDWAx+6FVIy64JeB0/8Bk2X4j3+0MXXisH4qpo=; b=b1vlJ5sePzz810hx+pMrlxSSJesdXUHAG4win5irm4EDQl5RxfQaqKSZUDR/ItrG1s QbxyLRNCe/eu38Y22If9hVn0As4KKblg2gnMRueOvVLX1IOq78MhpO5MMqmsi8mcxHcf kZYrPIV/YJCIQd/wxG0Jkvts+TtaHrwH0epKufKFZm8ABnYC0y8z9beWXacphId78Gmz EDnMe3tI2zPFSf5Lb0qNSm3BSfYbJ89jAdpAgD1gUYu2FD+/FJPe+kv0TamS1R0W8uJB rNiGKpJNBdbCvLgcsZoAbung0lqQIrq9xUxKeRSVP3p5fyAZZPDX17CcK5AixkkxwgGg DLdQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1738277408; x=1738882208; h=content-transfer-encoding:to:subject:message-id:date:from :in-reply-to:references:mime-version:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=W79XCfDWAx+6FVIy64JeB0/8Bk2X4j3+0MXXisH4qpo=; b=L4OlBzZsiSZjXLlrb5T80fu3ONhWPja2gZL3n7uBVUwMLHL7vG/S7wBz25sw0xrONC M6jyjmCaG5UY4gs9NT5RwRQ0+RRetSM9C2VOCJEAWlwArzvBUk8a+2N5mz0JJTM+rKwZ 0Tztw5N7cpkRHT7lewc/HlMO4IpM00QxcDKZUm98i4Y9WmKQT5OX3BJeBrhBCImnedEj 3Afo6+RcCpn7skxrQe2eXGAozbO7GwFA7gxDOGpxUGMHKkr4C1vyCYoEgduTLjxEJCdG JgUcGqTaKkKdh82g7w2azQ0cLg1PFfX0HIRuY0mcanER9QntiroNp6qCP+dDJnyiB7sM oGmw== X-Gm-Message-State: AOJu0YwU40ljpeXVZOkdHdS0XHf3hlQPwDS7XHPfHQzINlAy4ohRltUg SeFH8exSO4WSJG+iXpB7Q1oneu34bKaaG47RNctapkSTE6mucVfgahEN1AJnEjDfHst7cHXdMsa LbpvJ/BVUil1Hf4RCB39qRIz2vf+KRCtv X-Gm-Gg: ASbGnctHk+7PA56MIP0dgL92m/Z2/+Uj8wTK1KTVa7Iuj6CDWq6cMJAuk0AOUIpawQh 5Bcl35dNW11UVPXb/3zsWpiqoU5h3E3mm1B3SEx3N8djNYIk6ztxgyMSN3hrParMsvXhb/3xGuV 8= X-Google-Smtp-Source: AGHT+IEiXUvq1PJ5kVC68D7eJbAfhX/BPE2HZL38hnnDPcXDqMAqCfacaph9d7Kt0dQqsXH/oBOE2zx6P8oQEYkP5tU= X-Received: by 2002:a17:90b:37c3:b0:2ee:acb4:fecd with SMTP id 98e67ed59e1d1-2f83abdf1bcmr13639844a91.9.1738277406922; Thu, 30 Jan 2025 14:50:06 -0800 (PST) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-user@lists.gentoo.org Reply-to: gentoo-user@lists.gentoo.org X-Auto-Response-Suppress: DR, RN, NRN, OOF, AutoReply MIME-Version: 1.0 References: <1f5877ed-a700-70d5-415a-3516cedee895@gentoo.tnetconsulting.net> In-Reply-To: <1f5877ed-a700-70d5-415a-3516cedee895@gentoo.tnetconsulting.net> From: gevisz Date: Fri, 31 Jan 2025 00:49:54 +0200 X-Gm-Features: AWEUYZkfJQ90MKbaa6Ouzc2M-ugOszWGtb6iEm91AQbPGCK4fR-XBFnxhFvdRqU Message-ID: Subject: Re: [gentoo-user] Zombie Linux kernel To: gentoo-user@lists.gentoo.org Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Archives-Salt: b1131667-a8e3-4819-9130-b9e6b45886db X-Archives-Hash: d7f0970dbebd8aa8bc0cb304ef7804eb =D1=87=D1=82, 30 =D1=8F=D0=BD=D0=B2. 2025=E2=80=AF=D0=B3. =D0=B2 23:31, Gra= nt Taylor : > > On 1/30/25 11:49=E2=80=AFAM, gevisz wrote: > > I have not updated my Gentoo system since May 31, 2024, so in the > > middle of October 2024 I had to install it anew. > > Why did you have to install it anew? Because, as I wrote it, it was easier than to try to change a profile with the procedure described in the corresponding news. Moreover, it was written in the same news that the result is not guaranteed. So, why to do a lot of compilation just to try if it will work, while I did knew that starting from scratch I will get the guaranteed result with less compilation. > I've pulled Gentoo systems more than three years forward. I've talked > about how to do it on this mailing list in the past, including the > scripts that I was using at the time. > > I posted about pulling a system last updated in March '21 to current > last November. > > https://oldbytes.space/@drscriptt/113460218243172979 > > In short, switch to a git based Gentoo repo and do a bunch of tiny jumps > from the last update you did through current. It takes time and does a > LOT of compilation. But it works. > > > Just to remind you: during that time we all had to switch to the new > > Gentoo profile scheme, which made an update from my old system more > > difficult than a new install. > > I'm not able to log in and check the profile the system is on. But I > feel like I could have handled the profile change in December '24 just > like I could have when the profile change came out. The repo just > needed to have the branch checked out that was shortly after when the > profile came out. > > > On October 26, I compiled a new Linux kernel. It had version 6.6.52 > > and worked quite well. > > > > However, with time it disappeared from the Gentoo portage tree. So, > > 11 days ago I compiled kernel version 6.6.62 and successfully booted > > my Gentoo system with it over the next 9 days. > > > > The old kernel of version 6.6.52 was deleted from the /boot directory > > just after compilation of kernel version 6.6.62 just because it could > > not support my home ZFS disks any more (because zfs-kmod should be > > compiled against the specific kernel version and would not work with > > another one). > > Um ... kernel modules are kernel version dependent. You should have had > two different kernel modules, one for each kernel. > > /lib/modules/6.6.52.../zfs.ko > /lib/modules/6.6.62.../zfs.ko Well, maybe you are right. I did know this and so deleted the old kernel immediately after compiling the new one. > > But yesterday, after booting my Gentoo system, the uname -a command > > reported that I have been booted with the deleted old kernel version > > 6.6.52 compiled on October 26, 2024! And, of course, it did not > > mount my ZFS /home. > > So the kernel is still there. > > Did you manually delete the zfs / spl kernel modules? Yes, I manually deleted the /usr/lib/modules/6.6.52-gentoo/ directory just before the last shutdown before this happened. Moreover, at the same time I manually deleted everything from directory /usr/src/linux-6.6.52-gentoo/ except for the .config file. > I've had various other types of things break zfs / spl kernel module > compatibility even in the same version. I'd have to look at my motes of > what I do to get the module to work again. I think it usually involves > a round of make bzImage modules modules_prepare, and re-emerging the zfs > kmodule. But I may be mis-remembering. So far, I had no problems with incompatibility of the kernel and the ZFS kernel module. But I always followed the instruction to recompile zfs-kmod after compiling the kernel. > > I have double checked everything: the old kernel of version 6.6.52 > > together with its initramfs have been deleted from the /boot directory. > > Moreover, just a day before I deleted /usr/lib/modules/6.6.52-gentoo/ > > directory. > > initramfs complicate things and I tend to not use them. They have their > own modules and other things in them. They are usually based off of the > current system but can get out of sync relatively easily. So you could > have modules coming from the initramfs and not the root file system. I do not know if I needed it taking into account that I have compiled the XFS module into the kernel. But I have created initramfs-6.6.62-gentoo.img file with the command genkernel --install initramfs and I hope that the genkernel was wise enough to create it based on the /usr/lib/modules/6.6.62-gentoo/ directory and not the /usr/lib/modules/6.6.52-gentoo/ directory that still was present at that ti= me. Maybe, the file /boot/vmlinuz-6.6.52-gentoo also was present at the time of creating initramfs-6.6.62-gentoo.img but I definitely deleted /boot/vmlinuz-6.6.52-gentoo just after that. > > I tried to reboot and found out that GRUB menu had only an option of > > loading the old kernel of version 6.6.52. > > Did you try going to the GRUB command line and modifying it to match > what should have been on the system? No, I never did it in my life even with online documentation present, so I even have not tried to do it with just a GRUB command line before me. All that I managed to do is just to recall the commands grub-mkconfig -o /boot/grub/grub.cfg and grub-install /dev/sdc and executed them. > I've found that contemporary GRUB has tab completion and is generally > nicer to work with than older Korn shells. > > > However, I soon understood that the latter was because I have attached > > additional HDD before booting my Gentoo system, and as a result of > > this the system decided to boot from another HDD where I have not > > installed a new GRUB file. So, I fixed it and my Gentoo system was > > finally able to boot with the new kernel of version 6.6.62. > > Ya, device ordering can be a problem. That's one of the main reasons > that I like UUIDs to identify file systems et al. If you can get the > boot loader to start off of the correct disk, you're usually in place > that you can pull yourself up by your boot straps. But, as far as I know, the UUID does not help to identify the disk, from which the system starts as it is managed by BIOS. > > But the mystery of loading my Gentoo system with deleted kernel and > > deleted modules remains. How could that happen at all? > > The kernel and modules are somewhere that GRUB found them lest it > wouldn't have booted them. But they have not been present in the /boot/ directory, nor in /usr/lib/ directory, nor in the /usr/src/ directory. > > My only explanation is that XFS actually had not deleted the old kernel > > and the modules directory but only marked them as such. So, the old > > GRUB file could load them even when they had been marked as deleted. > > But is this explanation actually correct? > > I don't know that it's not correct, but I am very suspicious of it. I > would expect that GRUB's support for XFS would look at files that aren't > marked for deletion. I do agree with you that such an explanation is at least strange. However, I do not have any other. My alternative explanation was that the uname -a command was actually accessing not the current kernel but the GRUB logs. However, it would be extremely strange and was refuted by the fact that XFS kernel module was loaded into memory according to lsmod. Currently, with my new kernel loaded, lsmod does not report XFS kernel module being loaded into the memory. > There are a number of things that come to mind that are pure speculation > if you're no longer in that configuration to be able to look. Not the > least of which is files in file systems on different devices; e.g. /boot > vs /. Have a file in the /boot directory on the / (root) file system > and it will be covered up when the /boot file system is mounted. Or > something like that. I have not created a separate partition for the /boot directory. It is located in the / (root) partition. So, there is nothing to shadow it. I have also checked the other disk partitions. Some of them do have the /boot directory but neither of them contains the kernel 6.6.52. They do contain much older kernel versions.