From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1NSarB-0002LP-VJ for garchives@archives.gentoo.org; Wed, 06 Jan 2010 18:43:47 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 9B0C2E0867; Wed, 6 Jan 2010 18:43:24 +0000 (UTC) Received: from mail-ew0-f224.google.com (mail-ew0-f224.google.com [209.85.219.224]) by pigeon.gentoo.org (Postfix) with ESMTP id 2301EE0867 for ; Wed, 6 Jan 2010 18:43:24 +0000 (UTC) Received: by ewy24 with SMTP id 24so20706495ewy.26 for ; Wed, 06 Jan 2010 10:43:23 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=gamma; h=domainkey-signature:mime-version:received:date:message-id:subject :from:to:content-type; bh=fuQFSPZLHBCEuN2Y91ZzzVtpelehLfUc6lrqLw8zTPY=; b=iw6U+6AaRYj2GvE/q6oL0Vv8FuG5XC8GYRewfG5J0588KPHL7zAHPzm9mKaPZwkKlZ cm58glme/ewOmxKEU5QOoYKiQum/96Xfa1RnwzrFBxxWTXK0UHg1m2UZbsV06BBf93D6 Fi2Upi5y9UN7QV7990oZZ7kjnUeIDHUbxCz9g= DomainKey-Signature: a=rsa-sha1; c=nofws; d=gmail.com; s=gamma; h=mime-version:date:message-id:subject:from:to:content-type; b=TSXu1TIzkpyRnzf9Y5mRQs/ZNwdD8dxblJI/LsA7vxR1XRShi9HK45agIWP/2zMmDw 3NH3XDYYJjIHV8FXmgdINV9KtO4NmIEeYzXPEDAN7r4ExLvN+CecKhBCeLCKrgmheGuo /4IJoI3I3hIdGAVNHpbweSQM0WWekvujqBLpw= Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-user@lists.gentoo.org Reply-to: gentoo-user@lists.gentoo.org MIME-Version: 1.0 Received: by 10.216.90.76 with SMTP id d54mr4086200wef.55.1262803402319; Wed, 06 Jan 2010 10:43:22 -0800 (PST) Date: Wed, 6 Jan 2010 13:43:21 -0500 Message-ID: <534c2d371001061043r31680812n2ab4afc7630eb6c0@mail.gmail.com> Subject: [gentoo-user] emerging gentoo-sources failing due to file collisions From: Walt Rarus To: gentoo-user@lists.gentoo.org Content-Type: multipart/alternative; boundary=0016e6d778dd3766c7047c83549e X-Archives-Salt: b3766079-59db-4ffb-a172-e2b41e0106b5 X-Archives-Hash: b00c33bc3a68cf0eab3e7d6287828b7b --0016e6d778dd3766c7047c83549e Content-Type: text/plain; charset=ISO-8859-1 I've never experienced this phenomenon prior to gentoo-sources-2.6.31.-r6. I've always emerged gentoo-sources and they peacefully sat there and waited until I built the corresponding kernel later when I felt like it - if ever. With 2.6.31-r6, however, the emerge fails and consequently screws up 'emerge world' attempts. PITA. Any recommended workarounds or fixes? ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; I've pieced the following together from the console and elogv: ERROR: preinst This package will overwrite one or more files that may belong to other packages (see list below). You can use a command such as `portageq owners / ` to identify the installed package that owns a file. If portageq reports that only one package owns a file then do NOT file a bug report. A bug report is only useful if it identifies at least two or more packages that are known to install the same file(s). If a collision occurs and you can not explain where the file came from then you should simply ignore the collision since there is not enough information to determine if a real problem exists. Please do NOT file a bug report at http://bugs.gentoo.org unless you report exactly which two packages install the same file(s). Once again, please do NOT file a bug report unless you have completely understood the above message. package sys-kernel/gentoo-sources-2.6.31-r6 NOT merged Detected file collision(s): * /usr/src/linux-2.6.31-gentoo-r6/Makefile * /usr/src/linux-2.6.31-gentoo-r6/Kbuild .... gazillion similar ellided * /usr/src/linux-2.6.31-gentoo-r6/include/asm-generic/bitops/lock.h * /usr/src/linux-2.6.31-gentoo-r6/include/asm-generic/bitops/hweight.h * /usr/src/linux-2.6.31-gentoo-r6/include/asm-generic/bitops/non-atomic.h * * Searching all installed packages for file collisions... * * Press Ctrl-C to Stop * * None of the installed packages claim the file(s). * * Package 'sys-kernel/gentoo-sources-2.6.31-r6' NOT merged due to file * collisions. If necessary, refer to your elog messages for the whole * content of the above message. >>> Failed to install sys-kernel/gentoo-sources-2.6.31-r6, Log file: ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; WALRUS ~ # emerge --info Portage 2.1.6.13 (default/linux/amd64/10.0/desktop, gcc-4.3.4, glibc-2.9_p20081201-r2, 2.6.30-gentoo-r4 x86_64) ================================================================= System uname: Linux-2.6.30-gentoo-r4-x86_64-AMD_Athlon-tm-_64_X2_Dual_Core_Processor_4200+-with-gentoo-1.12.13 Timestamp of tree: Wed, 06 Jan 2010 07:45:02 +0000 app-shells/bash: 4.0_p35 dev-java/java-config: 1.3.7-r1, 2.1.9-r2 dev-lang/python: 2.4.6, 2.5.4-r3, 2.6.4 dev-python/pycrypto: 2.0.1-r8 dev-util/cmake: 2.6.4-r3 sys-apps/baselayout: 1.12.13 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=athlon64 -O2 -pipe -msse3" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=athlon64 -O2 -pipe -msse3" DISTDIR="/usr/portage/distfiles" FEATURES="ccache collision-protect distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://gentoo.osuosl.org/ ftp://ftp.gtlib.gatech.edu/pub/gentoo http://mirrors.acm.cs.rpi.edu/gentoo/ http://open-systems.ufl.edu/mirrors/gentoo ftp://lug.mtu.edu/gentoo ftp://gentoo.cites.uiuc.edu/pub/gentoo/ http://mirror.clarkson.edu/pub/distributions/gentoo/ " LANG="en_US.utf8" LDFLAGS="-Wl,-O1" LINGUAS="en en_US" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/java-binary /usr/local/portage/layman/sunrise /usr/local/portage/layman/lisp" SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa amd64 apache2 berkdb blas bluetooth branding bzip2 cairo cdr cjk cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr eds emacs emboss encode evo fam firefox flac fortran gdbm gif gpm gstreamer gtk hal iconv ipv6 jpeg kde lapack ldap libnotify mad mikmod mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly nvidia ogg opengl openmp oss pam pcre pdf perl png postgres ppds pppd python qt3support qt4 quicktime readline reflection ruby sdl session spell spl sqlite sse sse2 ssl startup-notification svg sysfs tcltk tcpd thunar tiff truetype type1 unicode usb vorbis x264 xml xorg xulrunner xv xvid zlib" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_US" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS --0016e6d778dd3766c7047c83549e Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable I've never experienced this phenomenon prior to gentoo-sources-2.6.31.-= r6. I've always emerged gentoo-sources and they peacefully sat there an= d waited until I built the corresponding kernel later when I felt like it -= if ever. With 2.6.31-r6, however, the emerge fails and consequently screws= up 'emerge world' attempts. PITA.

Any recommended workarounds or fixes?

;;;;;;;;;;;;;;;;;;;;;;;;;;= ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;= ;;;;;;;;;;
I've pieced the following together from the console and e= logv:

ERROR: preinst
This package will overwrite one or more files that ma= y belong to other
packages (see list below). You can use a command such = as `portageq
owners / <filename>` to identify the installed packag= e that owns a=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0
file. If portageq reports that only one package owns a file then do
NOT = file a bug report. A bug report is only useful if it identifies at
least= two or more packages that are known to install the same file(s).
If a c= ollision occurs and you can not explain where the file came from
then you should simply ignore the collision since there is not enough
in= formation to determine if a real problem exists. Please do NOT file
a bu= g report at http://bugs.gentoo.org u= nless you report exactly which
two packages install the same file(s). Once again, please do NOT file
a = bug report unless you have completely understood the above message.

= package sys-kernel/gentoo-sources-2.6.31-r6 NOT merged

Detected file= collision(s):

*=A0=A0=A0=A0=A0=A0 /usr/src/linux-2.6.31-gentoo-r6/Makefile
*=A0=A0= =A0=A0=A0=A0 /usr/src/linux-2.6.31-gentoo-r6/Kbuild
.... gazillion simil= ar ellided
*=A0=A0=A0=A0=A0 /usr/src/linux-2.6.31-gentoo-r6/include/asm-= generic/bitops/lock.h
*=A0=A0=A0=A0=A0 /usr/src/linux-2.6.31-gentoo-r6/i= nclude/asm-generic/bitops/hweight.h
*=A0=A0=A0=A0=A0 /usr/src/linux-2.6.31-gentoo-r6/include/asm-generic/bitops= /non-atomic.h
*
* Searching all installed packages for file collision= s...
*
* Press Ctrl-C to Stop
*
* None of the installed package= s claim the file(s).
*
* Package 'sys-kernel/gentoo-sources-2.6.31-r6' NOT merged due= to file
* collisions. If necessary, refer to your elog messages for the= whole
* content of the above message.

>>> Failed to ins= tall sys-kernel/gentoo-sources-2.6.31-r6, Log file:
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;= ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;

WALRUS ~ # emerge --in= fo=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0
Portage 2.1.6.13 (default/linux/amd64/10.0/= desktop, gcc-4.3.4, glibc-2.9_p20081201-r2, 2.6.30-gentoo-r4 x86_64)
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0
System uname: Linux-2.6.30-gentoo-r4-x86= _64-AMD_Athlon-tm-_64_X2_Dual_Core_Processor_4200+-with-gentoo-1.12.13
Timestamp of tree: Wed, 06 Jan 2010 07:45:02 +0000=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0
app-shells/bash:=A0=A0=A0=A0 4.0_p35
dev-java/java-config: 1.= 3.7-r1, 2.1.9-r2
dev-lang/python:=A0=A0=A0=A0 2.4.6, 2.5.4-r3, 2.6.4
dev-python/pycrypto: 2.0.1-r8
dev-util/cmake:=A0=A0=A0=A0=A0 2.6.4-r3sys-apps/baselayout: 1.12.13
sys-apps/sandbox:=A0=A0=A0 1.6-r2
sys-d= evel/autoconf:=A0 2.13, 2.63-r1
sys-devel/automake:=A0 1.4_p6, 1.5, 1.6.= 3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2
sys-devel/binutils:=A0 2.18-r3
sys-devel/gcc-config: 1.4.1
sys-devel/= libtool:=A0=A0 2.2.6b
virtual/os-headers:=A0 2.6.27-r2
ACCEPT_KEYWORD= S=3D"amd64"
CBUILD=3D"x86_64-pc-linux-gnu"
CFLAGS= =3D"-march=3Dathlon64 -O2 -pipe -msse3"
CHOST=3D"x86_64-pc-linux-gnu"
CONFIG_PROTECT=3D"/etc /usr= /share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK=3D"/etc/= ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc= /gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language= .dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/= udev/rules.d"
CXXFLAGS=3D"-march=3Dathlon64 -O2 -pipe -msse3"
DISTDIR=3D&quo= t;/usr/portage/distfiles"
FEATURES=3D"ccache collision-protect= distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict = unmerge-orphans userfetch"
GENTOO_MIRRORS=3D"http://gentoo.= osuosl.org/ ftp://ftp= .gtlib.gatech.edu/pub/gentoo http://mirrors.acm.cs.rpi.edu/gentoo/ http://open-systems.ufl.edu/mirrors/gentoo ftp://lug.mtu.edu/gentoo ftp://gentoo.cites.uiuc.edu/pu= b/gentoo/ http://mirror.clarkson.edu/pub/distributions/gentoo/ "
LANG=3D"en_US.utf8"
LDFLAGS=3D"-Wl,-O1"
LINGUAS= =3D"en en_US"
MAKEOPTS=3D"-j3"
PKGDIR=3D"/us= r/portage/packages"
PORTAGE_CONFIGROOT=3D"/"
PORTAGE_R= SYNC_OPTS=3D"--recursive --links --safe-links --perms --times --compre= ss --force --whole-file --delete --stats --timeout=3D180 --exclude=3D/distf= iles --exclude=3D/local --exclude=3D/packages"
PORTAGE_TMPDIR=3D"/var/tmp"
PORTDIR=3D"/usr/portage"=
PORTDIR_OVERLAY=3D"/usr/local/portage/layman/java-binary /usr/loca= l/portage/layman/sunrise /usr/local/portage/layman/lisp"
SYNC=3D&qu= ot;rsync://rsyn= c.namerica.gentoo.org/gentoo-portage"
USE=3D"X a52 aac acl acpi alsa amd64 apache2 berkdb blas bluetooth bra= nding bzip2 cairo cdr cjk cli consolekit cracklib crypt cups cxx dbus dri d= ts dvd dvdr eds emacs emboss encode evo fam firefox flac fortran gdbm gif g= pm gstreamer gtk hal iconv ipv6 jpeg kde lapack ldap libnotify mad mikmod m= mx mng modules mp3 mp4 mpeg mudflap multilib ncurses nls nptl nptlonly nvid= ia ogg opengl openmp oss pam pcre pdf perl png postgres ppds pppd python qt= 3support qt4 quicktime readline reflection ruby sdl session spell spl sqlit= e sse sse2 ssl startup-notification svg sysfs tcltk tcpd thunar tiff truety= pe type1 unicode usb vorbis x264 xml xorg xulrunner xv xvid zlib" ALSA= _CARDS=3D"intel8x0" ALSA_PCM_PLUGINS=3D"adpcm alaw asym copy= dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat li= near meter mmap_emul mulaw multi null plug rate route share shm softvol&quo= t; APACHE2_MODULES=3D"actions alias auth_basic auth_digest authn_anon = authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_= groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_= lock dbd deflate dir disk_cache env expires ext_filter file_cache filter he= aders ident imagemap include info log_config logio mem_cache mime mime_magi= c negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewri= te setenvif so speling status unique_id userdir usertrack vhost_alias"= ELIBC=3D"glibc" INPUT_DEVICES=3D"keyboard mouse evdev"= KERNEL=3D"linux" LCD_DEVICES=3D"bayrad cfontz cfontz633 glk= hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS=3D"en en_US&q= uot; RUBY_TARGETS=3D"ruby18" USERLAND=3D"GNU" VIDEO_CAR= DS=3D"nvidia vesa"
Unset:=A0 CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_= ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
=
--0016e6d778dd3766c7047c83549e--