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Date: Sun, 15 Nov 2015 17:39:29 -0800
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On Sun, 15 Nov 2015 19:05:26 +0000 (UTC)
Martin Vaeth <martin@mvath.de> wrote:

> Neil Bothwick <neil@digimed.co.uk> wrote:
> >
> > I deleted the busybox directory from the tree then ran emerge
> > --sync. The error is still there  
> 
> You have the same files that I have.
> Unfortunately, only now I actually did:
> 
> $ grep busybox-9999 Manifest
> EBUILD busybox-9999.ebuild 8580 [...]
> 
> ???
> I have the same wrong size recorded in the Manifest!
> No idea why portage didn't yell at me - there seems
> to be another bug involved...

I did the same thing today (15 Nov) and it succeeded.

However, I ran the ebuild command on a non-broken ebuild.  Try
repeating the same command on busybox 1.23.x or 1.24.x

I hope the gentoo devs will fix this bug before you have a chance to
test my advice :)