From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1OEOtZ-0005SO-H3 for garchives@archives.gentoo.org; Tue, 18 May 2010 15:39:49 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 6DC54E08A8; Tue, 18 May 2010 15:39:27 +0000 (UTC) Received: from mail-fx0-f53.google.com (mail-fx0-f53.google.com [209.85.161.53]) by pigeon.gentoo.org (Postfix) with ESMTP id 2D063E08A8 for ; Tue, 18 May 2010 15:39:26 +0000 (UTC) Received: by fxm9 with SMTP id 9so72313fxm.40 for ; Tue, 18 May 2010 08:39:26 -0700 (PDT) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Received: by 10.204.161.199 with SMTP id s7mr17926bkx.9.1274197140985; Tue, 18 May 2010 08:39:00 -0700 (PDT) Received: by 10.204.76.142 with HTTP; Tue, 18 May 2010 08:38:30 -0700 (PDT) X-Originating-IP: [88.156.85.112] In-Reply-To: References: <87wrv1flwh.fsf@discovery.4bw.universe> Date: Tue, 18 May 2010 17:38:30 +0200 Message-ID: Subject: Re: [gentoo-science] Error emergin gmsh-2.4.2 From: "d.i Gazeta.pl" To: gentoo-science@lists.gentoo.org Content-Type: multipart/alternative; boundary=00032555932ef6c6f50486e0231a X-Archives-Salt: 045abd0a-e515-46a6-b55e-7964e9befc98 X-Archives-Hash: 0b664f7acb6d312732e7c9323c1f31be --00032555932ef6c6f50486e0231a Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable On 18 May 2010 14:50, marco restelli wrote: > On Tue, May 18, 2010 at 2:13 PM, Marcin wrote: > > " /usr/bin/c++ -march=3Dathlon64 -O2 -pipe -msse3 -fPIC -Wl,-O1 -ldl -= lmpi > > CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o -o > cmTryCompileExec > > -rdynamic > > > > > > > /usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/../../../../x86_64-pc-linux-gnu/b= in/ld: > > cannot find -lmpi > > " > > > > USE=3D"mpi" may help? > > > > Hi Marcin, > well, possibly, but I have mpich2 and I get a conflict. > > [ebuild N ] sys-cluster/openmpi-1.2.9 USE=3D"cxx fortran ipv6 > -debug -heterogeneous -mpi-threads -pbs -romio -threads" 3,479 kB [0] > [ebuild N ] sci-libs/gmsh-2.4.2 USE=3D"X jpeg mpi png zlib -blas > -cgns -chaco -doc -examples -med -metis -opencascade" 0 kB [1] > [blocks B ] sys-cluster/openmpi ("sys-cluster/openmpi" is blocking > sys-cluster/mpich2-1.0.8) > [blocks B ] sys-cluster/mpich2 ("sys-cluster/mpich2" is blocking > sys-cluster/openmpi-1.2.9) > > Boost deps upon || ( >=3Dsys-cluster/openmpi-1.2.9[cxx] sys-cluster/mpich2[cxx,threads] ) so if you have cxx or threads disabled it will favour openmpi raising block with the other package. --=20 Pozdrawiam, =C5=81ukasz Michalik --00032555932ef6c6f50486e0231a Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable

On 18 May 2010 14:50, marco restelli <mrestelli@gmail.c= om> wrote:
On Tue, May 18, 2010 at 2:13 PM, Marcin <mrybarski@gmail.com> wrote:
> " =C2=A0/usr/bin/c++ -march=3Dathlon64 -O2 -pipe -msse3 -fPIC -Wl= ,-O1 -ldl -lmpi
> =C2=A0CMakeFiles/cmTryCompileExec.dir/testCXXCompiler.cxx.o -o cmTryCo= mpileExec
> =C2=A0-rdynamic
>
>
> =C2=A0/usr/lib/gcc/x86_64-pc-linux-gnu/4.3.4/../../../../x86_64-pc-lin= ux-gnu/bin/ld:
> =C2=A0cannot find -lmpi
> "
>
> USE=3D"mpi" may help?
>

Hi Marcin,
=C2=A0 well, possibly, but I have mpich2 and I get a conflict.

[ebuild =C2=A0N =C2=A0 =C2=A0] sys-cluster/openmpi-1.2.9 =C2=A0USE=3D"= cxx fortran ipv6
-debug -heterogeneous -mpi-threads -pbs -romio -threads" 3,479 kB [0]<= br> [ebuild =C2=A0N =C2=A0 =C2=A0] sci-libs/gmsh-2.4.2 =C2=A0USE=3D"X jpeg= mpi png zlib -blas
-cgns -chaco -doc -examples -med -metis -opencascade" 0 kB [1]
[blocks B =C2=A0 =C2=A0 ] sys-cluster/openmpi ("sys-cluster/openmpi&qu= ot; is blocking
sys-cluster/mpich2-1.0.8)
[blocks B =C2=A0 =C2=A0 ] sys-cluster/mpich2 ("sys-cluster/mpich2"= ; is blocking
sys-cluster/openmpi-1.2.9)


Boost deps upon || ( >=3Dsys-cluster/openmpi-1.2.= 9[cxx] sys-cluster/mpich2[cxx,threads] ) so if you have cxx or threads disa= bled it will favour openmpi raising block with the other package.

--
Pozdrawiam,
=C5=81ukasz Michalik
--00032555932ef6c6f50486e0231a--