From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1OXKB1-00034A-KD for garchives@archives.gentoo.org; Fri, 09 Jul 2010 20:28:04 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 0DE8AE01C9; Fri, 9 Jul 2010 20:27:33 +0000 (UTC) Received: from smtp.webfaction.com (mail6.webfaction.com [74.55.86.74]) by pigeon.gentoo.org (Postfix) with ESMTP id E99D0E01C9 for ; Fri, 9 Jul 2010 20:27:32 +0000 (UTC) Received: from mail-ww0-f53.google.com (mail-ww0-f53.google.com [74.125.82.53]) by smtp.webfaction.com (Postfix) with ESMTP id 2B888392DC5 for ; Fri, 9 Jul 2010 15:27:31 -0500 (CDT) Received: by wwi14 with SMTP id 14so207351wwi.10 for ; Fri, 09 Jul 2010 13:27:30 -0700 (PDT) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Received: by 10.216.170.131 with SMTP id p3mr4773014wel.91.1278707250620; Fri, 09 Jul 2010 13:27:30 -0700 (PDT) Received: by 10.216.182.72 with HTTP; Fri, 9 Jul 2010 13:27:30 -0700 (PDT) Date: Fri, 9 Jul 2010 22:27:30 +0200 Message-ID: Subject: [gentoo-science] [G-CRAN] Surprise! Bioconductor works! From: Auke Booij To: gentoo-science@lists.gentoo.org Content-Type: text/plain; charset=ISO-8859-1 X-Archives-Salt: 9a8e451d-fc79-49e4-b920-b0fd86d1a0e6 X-Archives-Hash: ff728e3f68be96aa40f9a85b0c03af07 Surprise! You can now not only install R extension packages from CRAN, but you can even get those from Bioconductor. I'll be sending a full report and step-by-step instructions monday, as part of my weekly GSoC report, but if you know the deal with G-CRAN you can just install the new code and try installing packages from these repositories: http://www.bioconductor.org/packages/devel/bioc/ http://www.bioconductor.org/packages/devel/data/annotation/ (replace "devel" with "release" in case you're paranoid) Make sure to first install (in this order) dev-R/Biobase, dev-R/DBI and dev-R/RSQLite. As always, I'd love to hear your experience with the code, and should you run into any build errors, please tell me. Have a good weekend! Auke Booij / tulcod.