[gentoo-science] problems compiling freemat from science overlay

[gentoo-science] problems compiling freemat from science overlay

[Pablo De Napoli]

Hi

I'm having problems compiling sci-mathematics/freemat-3.2 from science overlay.
(on a Gentoo/x86 host)

My error mesages are reported below:

I'm using 

gcc-4.1.2
binutils-2.17

My USE flags (reported by emerge -p sci-mathematics/freemat) are

 USE="arpack fftw ncurses umfpack -ffcall"

Any help is wellcome!

best regards.
Pablo

PD: I don't know where should I report the bugs in the science overlay package. In list
list? In bugzilla?
In the gentoo science site? (which seems to be broken, gives "internal server error")

Here are the error messages 

Making all in src
make[1]: Entering directory
`/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
make  all-am
make[2]: Entering directory
`/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
i686-pc-linux-gnu-g++  -O3 -march=athlon -funroll-loops -pipe -fomit-frame-pointer   -o
FreeMat  application.o FuncMode.o FuncTerminal.o MainApp.o main.o DumbTerminal.o
Terminal.o   application.moc.o FuncMode.moc.o MainApp.moc.o Terminal.moc.o
DumbTerminal.moc.o FreeMat_qrc.o ..//libs/libCore/libCore.a ..//libs/libFN/libFN.a
..//libs/libGraphics/libGraphics.a ..//libs/libFreeMat/libFreeMat.a
..//libs/libXP/libXP.a ..//libs/libMex/libMex.a  -L/usr/lib/qt4 -lQtOpenGL -lGLU -lGL
-lQtGui -laudio -lXt -lpng -lSM -lICE -lXrender -lXrandr -lXfixes -lXcursor -lfreetype
-lfontconfig -lXext -lX11 -lQtNetwork -lQtXml -lQtCore -lz -lm -lrt -lpthread -ldl   -lz
-larpack -lfftw3 -lfftw3f -lumfpack -lamd -llapack -lblas -lpcre  -lncurses  
-L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2
-L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib
-L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lncurses -lgfortranbegin -lgfortran -lm
-lgcc_s
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
slo_ge_complex<float>(float, float, float, float)':
Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
slo_ge_complex<float>(float, float, float, float)]+0x13): undefined reference to `float
complex_abs<float>(float, float)'
Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
slo_ge_complex<float>(float, float, float, float)]+0x2b): undefined reference to `float
complex_abs<float>(float, float)'
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
slo_le_complex<float>(float, float, float, float)':
Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
slo_le_complex<float>(float, float, float, float)]+0x13): undefined reference to `float
complex_abs<float>(float, float)'
Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
slo_le_complex<float>(float, float, float, float)]+0x2b): undefined reference to `float
complex_abs<float>(float, float)'
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
slo_gt_complex<float>(float, float, float, float)':
Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned int
slo_gt_complex<float>(float, float, float, float)]+0x13): undefined reference to `float
complex_abs<float>(float, float)'
..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned
int slo_gt_complex<float>(float, float, float, float)]+0x2b): more undefined references
to `float complex_abs<float>(float, float)' follow
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
slo_ge_complex<double>(double, double, double, double)':
Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
slo_ge_complex<double>(double, double, double, double)]+0x23): undefined reference to
`double complex_abs<double>(double, double)'
Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
slo_ge_complex<double>(double, double, double, double)]+0x3b): undefined reference to
`double complex_abs<double>(double, double)'
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
slo_le_complex<double>(double, double, double, double)':
Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
slo_le_complex<double>(double, double, double, double)]+0x23): undefined reference to
`double complex_abs<double>(double, double)'
Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
slo_le_complex<double>(double, double, double, double)]+0x3b): undefined reference to
`double complex_abs<double>(double, double)'
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
slo_gt_complex<double>(double, double, double, double)':
Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned int
slo_gt_complex<double>(double, double, double, double)]+0x23): undefined reference to
`double complex_abs<double>(double, double)'
..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned
int slo_gt_complex<double>(double, double, double, double)]+0x3b): more undefined
references to `double complex_abs<double>(double, double)' follow
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `float**
SparseAbsFunctionComplex<float>(int, int, float const**)':
Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIfEPPT_iiPPKS0_[float**
SparseAbsFunctionComplex<float>(int, int, float const**)]+0x17a): undefined reference to
`float complex_abs<float>(float, float)'
..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `double**
SparseAbsFunctionComplex<double>(int, int, double const**)':
Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIdEPPT_iiPPKS0_[double**
SparseAbsFunctionComplex<double>(int, int, double const**)]+0x17a): undefined reference
to `double complex_abs<double>(double, double)'
collect2: ld returned 1 exit status
make[2]: *** [FreeMat] Error 1
make[2]: Leaving directory
`/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory
`/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
make: *** [all-recursive] Error 1



       
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Re: [gentoo-science] problems compiling freemat from science overlay

[Jeffrey Gardner]

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Pablo De Napoli wrote:
> Hi
> 
> I'm having problems compiling sci-mathematics/freemat-3.2 from science overlay.
> (on a Gentoo/x86 host)

I think this mailing list is the best place to discuss the science overlay.

With the same gcc, binutils, and USE flags, I just emerged freemat just
fine on amd64.

Can you post your emerge --info please?

- --
Jeffrey Gardner
Gentoo Developer
Public PGP Key ID: 4A5D8F23
hkp://pgpkeys.mit.edu
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.7 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org

iD8DBQFGl8KaiR2KxEpdjyMRAnkMAJ47E6KZWPsrSWDtk64kBHvXNR3VCwCdE70M
A+m89HxhnMYbEcMLFLySJ9g=
=qMMc
-----END PGP SIGNATURE-----
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Re: [gentoo-science] problems compiling freemat from science overlay

[Carmelo Piccione]

[-- Attachment #1: Type: text/plain, Size: 6602 bytes --]

I think I addressed this exact issue in a previous thread. See this:

http://www.mail-archive.com/gentoo-science@lists.gentoo.org/msg00497.html

- Carmelo

On 7/13/07, Pablo De Napoli <pdenapo@yahoo.com> wrote:
>
> Hi
>
> I'm having problems compiling sci-mathematics/freemat-3.2 from science
> overlay.
> (on a Gentoo/x86 host)
>
> My error mesages are reported below:
>
> I'm using
>
> gcc-4.1.2
> binutils-2.17
>
> My USE flags (reported by emerge -p sci-mathematics/freemat) are
>
> USE="arpack fftw ncurses umfpack -ffcall"
>
> Any help is wellcome!
>
> best regards.
> Pablo
>
> PD: I don't know where should I report the bugs in the science overlay
> package. In list
> list? In bugzilla?
> In the gentoo science site? (which seems to be broken, gives "internal
> server error")
>
> Here are the error messages
>
> Making all in src
> make[1]: Entering directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> make  all-am
> make[2]: Entering directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> i686-pc-linux-gnu-g++  -O3 -march=athlon -funroll-loops -pipe
> -fomit-frame-pointer   -o
> FreeMat  application.o FuncMode.o FuncTerminal.o MainApp.o main.o
> DumbTerminal.o
> Terminal.o   application.moc.o FuncMode.moc.o MainApp.moc.o Terminal.moc.o
> DumbTerminal.moc.o FreeMat_qrc.o ..//libs/libCore/libCore.a
> ..//libs/libFN/libFN.a
> ..//libs/libGraphics/libGraphics.a ..//libs/libFreeMat/libFreeMat.a
> ..//libs/libXP/libXP.a ..//libs/libMex/libMex.a  -L/usr/lib/qt4 -lQtOpenGL
> -lGLU -lGL
> -lQtGui -laudio -lXt -lpng -lSM -lICE -lXrender -lXrandr -lXfixes
> -lXcursor -lfreetype
> -lfontconfig -lXext -lX11 -lQtNetwork -lQtXml -lQtCore -lz -lm -lrt
> -lpthread -ldl   -lz
> -larpack -lfftw3 -lfftw3f -lumfpack -lamd -llapack -lblas
> -lpcre  -lncurses
> -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2
> -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib
> -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lncurses -lgfortranbegin
> -lgfortran -lm
> -lgcc_s
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_ge_complex<float>(float, float, float, float)':
> Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<float>(float, float, float, float)]+0x13): undefined
> reference to `float
> complex_abs<float>(float, float)'
> Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<float>(float, float, float, float)]+0x2b): undefined
> reference to `float
> complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_le_complex<float>(float, float, float, float)':
> Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> slo_le_complex<float>(float, float, float, float)]+0x13): undefined
> reference to `float
> complex_abs<float>(float, float)'
> Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> slo_le_complex<float>(float, float, float, float)]+0x2b): undefined
> reference to `float
> complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_gt_complex<float>(float, float, float, float)':
> Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned int
> slo_gt_complex<float>(float, float, float, float)]+0x13): undefined
> reference to `float
> complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> (.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned
> int slo_gt_complex<float>(float, float, float, float)]+0x2b): more
> undefined references
> to `float complex_abs<float>(float, float)' follow
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_ge_complex<double>(double, double, double, double)':
> Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<double>(double, double, double, double)]+0x23): undefined
> reference to
> `double complex_abs<double>(double, double)'
> Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<double>(double, double, double, double)]+0x3b): undefined
> reference to
> `double complex_abs<double>(double, double)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_le_complex<double>(double, double, double, double)':
> Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> slo_le_complex<double>(double, double, double, double)]+0x23): undefined
> reference to
> `double complex_abs<double>(double, double)'
> Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> slo_le_complex<double>(double, double, double, double)]+0x3b): undefined
> reference to
> `double complex_abs<double>(double, double)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_gt_complex<double>(double, double, double, double)':
> Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned int
> slo_gt_complex<double>(double, double, double, double)]+0x23): undefined
> reference to
> `double complex_abs<double>(double, double)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> (.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned
> int slo_gt_complex<double>(double, double, double, double)]+0x3b): more
> undefined
> references to `double complex_abs<double>(double, double)' follow
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `float**
> SparseAbsFunctionComplex<float>(int, int, float const**)':
> Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIfEPPT_iiPPKS0_[float**
> SparseAbsFunctionComplex<float>(int, int, float const**)]+0x17a):
> undefined reference to
> `float complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `double**
> SparseAbsFunctionComplex<double>(int, int, double const**)':
> Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIdEPPT_iiPPKS0_[double**
> SparseAbsFunctionComplex<double>(int, int, double const**)]+0x17a):
> undefined reference
> to `double complex_abs<double>(double, double)'
> collect2: ld returned 1 exit status
> make[2]: *** [FreeMat] Error 1
> make[2]: Leaving directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> make: *** [all-recursive] Error 1
>
>
>
>
>
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>
>

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Re: [gentoo-science] problems compiling freemat from science overlay

[Pablo De Napoli]

My emerge --info is:

Portage 2.1.2.9 (default-linux/x86/2006.1/desktop, gcc-4.1.2, glibc-2.5-r4, 2.6.20.14
i686)
=================================================================
System uname: 2.6.20.14 i686 AMD Duron(tm)
Gentoo Base System release 1.12.9
Timestamp of tree: Fri, 13 Jul 2007 12:30:01 +0000
dev-java/java-config: 1.3.7, 2.0.32
dev-lang/python:     2.3.5-r3, 2.4.4-r4
dev-python/pycrypto: 2.0.1-r5
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.20
ACCEPT_KEYWORDS="x86"
AUTOCLEAN="yes"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O3 -march=athlon -funroll-loops -pipe -fomit-frame-pointer"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown
/usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/revdep-rebuild
/etc/terminfo /etc/texmf/web2c"
CXXFLAGS="-O3 -march=athlon -funroll-loops -pipe -fomit-frame-pointer"
DISTDIR="/distfiles"
FEATURES="buildpkg distlocks metadata-transfer sandbox sfperms strict userpriv
usersandbox"
GENTOO_MIRRORS="ftp://gentoo.mirrors.tds.net/gentoo http://gentoo.mirrors.tds.net/gentoo
http://gentoo.mirrors.easynews.com/linux/gentoo/"
LANG="POSIX"
LC_ALL="POSIX"
LINGUAS="es_AR es en"
PKGDIR="/hdc4/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force
--whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles
--exclude=/local --exclude=/packages --filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/layman/kde /usr/local/layman/science /usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="3dnow 3dnowex 3dnowext X aac aalib alsa ansi apache2 arts asf audiofile avi berkdb
bitmap-fonts blas bzip2 cairo cdparanoia cdr cli cracklib crypt css cups cvs dbus divx
doc dri dts dv dvd dvdr dvdread eds emboss encode f77 fam fbcon ffmpeg fftw firefox flac
foomaticdb fortran gcj gdbm gif gimpprint ginac glibc-omitfp gmp gpm gstreamer gtk gtk2
gtkhtml iconv icq idea imagemagick imlib ipv6 isdnlog jabber java jce jpeg kde
kdeenablefinal kdehiddenvisibility kqemu ladspa lame lapack lcms lesstif libg++ lzo
lzw-tiff mad matroska mbrola midi mikmod mmx mmx2 mng motif mp3 mpeg msn mudflap
musicbrainz nas ncurses network nls no_wxgtk1 nodrm nptl nptlonly ogg oggvorbis opengl
openmp oscar oss pcre pdf perl plotutils png ppds pppd python qt qt3 qt4 quicktime
readline real reflection rtc rts samba sdl session sld sndfile speex spell spl sse sse2
ssl subversion svga tcltk tcpd tetex theora tiff truetype truetype-fonts trutype-fonts
type1-fonts userlocales vorbis win32codecs wxwindows x264 x86 xchattext xcomposite xine
xml xml2 xorg xv xvid yahoo zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x
ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0
intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958
ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol"
ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz
cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="es_AR es en"
USERLAND="GNU" VIDEO_CARDS="savage"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS, MAKEOPTS, PORTAGE_COMPRESS,
PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS



--- Jeffrey Gardner <je_fro@gentoo.org> wrote:

> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
> 
> Pablo De Napoli wrote:
> > Hi
> > 
> > I'm having problems compiling sci-mathematics/freemat-3.2 from science overlay.
> > (on a Gentoo/x86 host)
> 
> I think this mailing list is the best place to discuss the science overlay.
> 
> With the same gcc, binutils, and USE flags, I just emerged freemat just
> fine on amd64.
> 
> Can you post your emerge --info please?
> 
> - --
> Jeffrey Gardner
> Gentoo Developer
> Public PGP Key ID: 4A5D8F23
> hkp://pgpkeys.mit.edu
> -----BEGIN PGP SIGNATURE-----
> Version: GnuPG v1.4.7 (GNU/Linux)
> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org
> 
> iD8DBQFGl8KaiR2KxEpdjyMRAnkMAJ47E6KZWPsrSWDtk64kBHvXNR3VCwCdE70M
> A+m89HxhnMYbEcMLFLySJ9g=
> =qMMc
> -----END PGP SIGNATURE-----
> -- 
> gentoo-science@gentoo.org mailing list
> 
> 



       
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Re: [gentoo-science] problems compiling freemat from science overlay

[Pablo De Napoli]

Dear Carmelo:

I've tried to copy your ebuilds and patches from your e-mail,
but patching failed. (and I'm not sure if I had copied them correctly]

Could you please post your files somewhere? (so that we can
get it exactly as they are], or send it to me as an attachment?

(This is why I think that using the gentoo bug tracker could be better!)

best regards
Pablo

--- Carmelo Piccione <carmelo.piccione@gmail.com> wrote:

> I think I addressed this exact issue in a previous thread. See this:
> 
> http://www.mail-archive.com/gentoo-science@lists.gentoo.org/msg00497.html
> 
> - Carmelo
> 
> On 7/13/07, Pablo De Napoli <pdenapo@yahoo.com> wrote:
> >
> > Hi
> >
> > I'm having problems compiling sci-mathematics/freemat-3.2 from science
> > overlay.
> > (on a Gentoo/x86 host)
> >
> > My error mesages are reported below:
> >
> > I'm using
> >
> > gcc-4.1.2
> > binutils-2.17
> >
> > My USE flags (reported by emerge -p sci-mathematics/freemat) are
> >
> > USE="arpack fftw ncurses umfpack -ffcall"
> >
> > Any help is wellcome!
> >
> > best regards.
> > Pablo
> >
> > PD: I don't know where should I report the bugs in the science overlay
> > package. In list
> > list? In bugzilla?
> > In the gentoo science site? (which seems to be broken, gives "internal
> > server error")
> >
> > Here are the error messages
> >
> > Making all in src
> > make[1]: Entering directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > make  all-am
> > make[2]: Entering directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > i686-pc-linux-gnu-g++  -O3 -march=athlon -funroll-loops -pipe
> > -fomit-frame-pointer   -o
> > FreeMat  application.o FuncMode.o FuncTerminal.o MainApp.o main.o
> > DumbTerminal.o
> > Terminal.o   application.moc.o FuncMode.moc.o MainApp.moc.o Terminal.moc.o
> > DumbTerminal.moc.o FreeMat_qrc.o ..//libs/libCore/libCore.a
> > ..//libs/libFN/libFN.a
> > ..//libs/libGraphics/libGraphics.a ..//libs/libFreeMat/libFreeMat.a
> > ..//libs/libXP/libXP.a ..//libs/libMex/libMex.a  -L/usr/lib/qt4 -lQtOpenGL
> > -lGLU -lGL
> > -lQtGui -laudio -lXt -lpng -lSM -lICE -lXrender -lXrandr -lXfixes
> > -lXcursor -lfreetype
> > -lfontconfig -lXext -lX11 -lQtNetwork -lQtXml -lQtCore -lz -lm -lrt
> > -lpthread -ldl   -lz
> > -larpack -lfftw3 -lfftw3f -lumfpack -lamd -llapack -lblas
> > -lpcre  -lncurses
> > -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2
> > -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib
> > -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lncurses -lgfortranbegin
> > -lgfortran -lm
> > -lgcc_s
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_ge_complex<float>(float, float, float, float)':
> > Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<float>(float, float, float, float)]+0x13): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<float>(float, float, float, float)]+0x2b): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_le_complex<float>(float, float, float, float)':
> > Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<float>(float, float, float, float)]+0x13): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<float>(float, float, float, float)]+0x2b): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_gt_complex<float>(float, float, float, float)':
> > Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_gt_complex<float>(float, float, float, float)]+0x13): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> > (.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned
> > int slo_gt_complex<float>(float, float, float, float)]+0x2b): more
> > undefined references
> > to `float complex_abs<float>(float, float)' follow
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_ge_complex<double>(double, double, double, double)':
> > Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<double>(double, double, double, double)]+0x23): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<double>(double, double, double, double)]+0x3b): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_le_complex<double>(double, double, double, double)':
> > Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<double>(double, double, double, double)]+0x23): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<double>(double, double, double, double)]+0x3b): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_gt_complex<double>(double, double, double, double)':
> > Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_gt_complex<double>(double, double, double, double)]+0x23): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> > (.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned
> > int slo_gt_complex<double>(double, double, double, double)]+0x3b): more
> > undefined
> > references to `double complex_abs<double>(double, double)' follow
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `float**
> > SparseAbsFunctionComplex<float>(int, int, float const**)':
> > Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIfEPPT_iiPPKS0_[float**
> > SparseAbsFunctionComplex<float>(int, int, float const**)]+0x17a):
> > undefined reference to
> > `float complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `double**
> > SparseAbsFunctionComplex<double>(int, int, double const**)':
> > Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIdEPPT_iiPPKS0_[double**
> > SparseAbsFunctionComplex<double>(int, int, double const**)]+0x17a):
> > undefined reference
> > to `double complex_abs<double>(double, double)'
> > collect2: ld returned 1 exit status
> > make[2]: *** [FreeMat] Error 1
> > make[2]: Leaving directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > make[1]: *** [all] Error 2
> > make[1]: Leaving directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > make: *** [all-recursive] Error 1
> >
> >
> >
> >
> >
> > ____________________________________________________________________________________
> > Looking for a deal? Find great prices on flights and hotels with Yahoo!
> > FareChase.
> > http://farechase.yahoo.com/
> > --
> > gentoo-science@gentoo.org mailing list
> >
> >
> 



       
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Re: [gentoo-science] problems compiling freemat from science overlay

[Pablo De Napoli]

I seems that the patches are not really needed, as I could sucessfully compile
freemat-3.2 by hand (configure/make/make install).
I don't know why the ebuild fails.

Pablo De Nápoli

--- Carmelo Piccione <carmelo.piccione@gmail.com> wrote:

> I think I addressed this exact issue in a previous thread. See this:
> 
> http://www.mail-archive.com/gentoo-science@lists.gentoo.org/msg00497.html
> 
> - Carmelo
> 
> On 7/13/07, Pablo De Napoli <pdenapo@yahoo.com> wrote:
> >
> > Hi
> >
> > I'm having problems compiling sci-mathematics/freemat-3.2 from science
> > overlay.
> > (on a Gentoo/x86 host)
> >
> > My error mesages are reported below:
> >
> > I'm using
> >
> > gcc-4.1.2
> > binutils-2.17
> >
> > My USE flags (reported by emerge -p sci-mathematics/freemat) are
> >
> > USE="arpack fftw ncurses umfpack -ffcall"
> >
> > Any help is wellcome!
> >
> > best regards.
> > Pablo
> >
> > PD: I don't know where should I report the bugs in the science overlay
> > package. In list
> > list? In bugzilla?
> > In the gentoo science site? (which seems to be broken, gives "internal
> > server error")
> >
> > Here are the error messages
> >
> > Making all in src
> > make[1]: Entering directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > make  all-am
> > make[2]: Entering directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > i686-pc-linux-gnu-g++  -O3 -march=athlon -funroll-loops -pipe
> > -fomit-frame-pointer   -o
> > FreeMat  application.o FuncMode.o FuncTerminal.o MainApp.o main.o
> > DumbTerminal.o
> > Terminal.o   application.moc.o FuncMode.moc.o MainApp.moc.o Terminal.moc.o
> > DumbTerminal.moc.o FreeMat_qrc.o ..//libs/libCore/libCore.a
> > ..//libs/libFN/libFN.a
> > ..//libs/libGraphics/libGraphics.a ..//libs/libFreeMat/libFreeMat.a
> > ..//libs/libXP/libXP.a ..//libs/libMex/libMex.a  -L/usr/lib/qt4 -lQtOpenGL
> > -lGLU -lGL
> > -lQtGui -laudio -lXt -lpng -lSM -lICE -lXrender -lXrandr -lXfixes
> > -lXcursor -lfreetype
> > -lfontconfig -lXext -lX11 -lQtNetwork -lQtXml -lQtCore -lz -lm -lrt
> > -lpthread -ldl   -lz
> > -larpack -lfftw3 -lfftw3f -lumfpack -lamd -llapack -lblas
> > -lpcre  -lncurses
> > -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2
> > -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib
> > -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lncurses -lgfortranbegin
> > -lgfortran -lm
> > -lgcc_s
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_ge_complex<float>(float, float, float, float)':
> > Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<float>(float, float, float, float)]+0x13): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<float>(float, float, float, float)]+0x2b): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_le_complex<float>(float, float, float, float)':
> > Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<float>(float, float, float, float)]+0x13): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<float>(float, float, float, float)]+0x2b): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_gt_complex<float>(float, float, float, float)':
> > Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned int
> > slo_gt_complex<float>(float, float, float, float)]+0x13): undefined
> > reference to `float
> > complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> > (.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned
> > int slo_gt_complex<float>(float, float, float, float)]+0x2b): more
> > undefined references
> > to `float complex_abs<float>(float, float)' follow
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_ge_complex<double>(double, double, double, double)':
> > Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<double>(double, double, double, double)]+0x23): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_ge_complex<double>(double, double, double, double)]+0x3b): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_le_complex<double>(double, double, double, double)':
> > Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<double>(double, double, double, double)]+0x23): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_le_complex<double>(double, double, double, double)]+0x3b): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> > slo_gt_complex<double>(double, double, double, double)':
> > Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned int
> > slo_gt_complex<double>(double, double, double, double)]+0x23): undefined
> > reference to
> > `double complex_abs<double>(double, double)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> > (.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned
> > int slo_gt_complex<double>(double, double, double, double)]+0x3b): more
> > undefined
> > references to `double complex_abs<double>(double, double)' follow
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `float**
> > SparseAbsFunctionComplex<float>(int, int, float const**)':
> > Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIfEPPT_iiPPKS0_[float**
> > SparseAbsFunctionComplex<float>(int, int, float const**)]+0x17a):
> > undefined reference to
> > `float complex_abs<float>(float, float)'
> > ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `double**
> > SparseAbsFunctionComplex<double>(int, int, double const**)':
> > Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIdEPPT_iiPPKS0_[double**
> > SparseAbsFunctionComplex<double>(int, int, double const**)]+0x17a):
> > undefined reference
> > to `double complex_abs<double>(double, double)'
> > collect2: ld returned 1 exit status
> > make[2]: *** [FreeMat] Error 1
> > make[2]: Leaving directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > make[1]: *** [all] Error 2
> > make[1]: Leaving directory
> > `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> > make: *** [all-recursive] Error 1
> >
> >
> >
> >
> >
> > ____________________________________________________________________________________
> > Looking for a deal? Find great prices on flights and hotels with Yahoo!
> > FareChase.
> > http://farechase.yahoo.com/
> > --
> > gentoo-science@gentoo.org mailing list
> >
> >
> 



 
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