From: "M. J. Everitt" <m.j.everitt@iee.org>
To: gentoo-science@lists.gentoo.org
Subject: Re: [gentoo-science] Failed emerge for sci-visualization/mayavi-4.4.2
Date: Thu, 26 May 2016 03:24:21 +0100 [thread overview]
Message-ID: <57465E55.7050701@iee.org> (raw)
In-Reply-To: <CAHV2F1LJ2Ep8OvV7aa38uijnTQ-KwajZZH85z=JwgUsRV6LqQQ@mail.gmail.com>
On 20/05/16 14:34, marco restelli wrote:
> Hi,
> I have a problem emerging sci-visualization/mayavi-4.4.2: here is
> the error message:
>
>>>> Compiling source in /var/tmp/portage/sci-visualization/mayavi-4.4.2/work/mayavi-4.4.2 ...
> * python2_7: running distutils-r1_run_phase distutils-r1_python_compile
> /usr/bin/python2.7 setup.py build
> running build
> ----------------------------------------------------------------------
> Building TVTK classes.../var/tmp/portage/sci-visualization/mayavi-4.4.2/temp/environment:
> line 1434: 13669 Segmentation fault "${@}"
> * ERROR: sci-visualization/mayavi-4.4.2::science failed (compile phase):
> * (no error message)
> *
> * Call stack:
> * ebuild.sh, line 133: Called src_compile
> * environment, line 3657: Called distutils-r1_src_compile
> * environment, line 949: Called _distutils-r1_run_foreach_impl
> 'distutils-r1_python_compile'
> * environment, line 370: Called python_foreach_impl
> 'distutils-r1_run_phase' 'distutils-r1_python_compile'
> * environment, line 3189: Called multibuild_foreach_variant
> '_python_multibuild_wrapper' 'distutils-r1_run_phase'
> 'distutils-r1_python_compile'
> * environment, line 2291: Called _multibuild_run
> '_python_multibuild_wrapper' 'distutils-r1_run_phase'
> 'distutils-r1_python_compile'
> * environment, line 2289: Called _python_multibuild_wrapper
> 'distutils-r1_run_phase' 'distutils-r1_python_compile'
> * environment, line 632: Called distutils-r1_run_phase
> 'distutils-r1_python_compile'
> * environment, line 940: Called distutils-r1_python_compile
> * environment, line 812: Called esetup.py 'build'
> * environment, line 1440: Called die
> * The specific snippet of code:
> * "${@}" || die "${die_args[@]}" || return ${?}
>
>
> I could open a bug, but first I would like to understand whether the
> problem is with the mayavi ebuild, or mayavi itself, or some
> dependency.
>
> Thank you,
> Marco
>
>
> Here are some more details:
>
> # emerge --info '=sci-visualization/mayavi-4.4.2::science'
> /bin/sh: warning: setlocale: LC_ALL: cannot change locale (en)
> setlocale: unsupported locale setting
> setlocale: unsupported locale setting
> Portage 2.2.28 (python 3.4.3-final-0,
> default/linux/amd64/13.0/desktop, gcc-4.9.3, glibc-2.22-r4,
> 3.12.13-gentoo x86_64)
> =================================================================
> System Settings
> =================================================================
> System uname: Linux-3.12.13-gentoo-x86_64-Intel-R-_Core-TM-_i3-2120_CPU_@_3.30GHz-with-gentoo-2.2
> KiB Mem: 3926120 total, 739384 free
> KiB Swap: 15999996 total, 15128780 free
> Timestamp of repository gentoo: Fri, 20 May 2016 13:00:01 +0000
> sh bash 4.3_p42-r1
> ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
> app-shells/bash: 4.3_p42-r1::gentoo
> dev-java/java-config: 2.2.0-r3::gentoo
> dev-lang/perl: 5.20.2::gentoo
> dev-lang/python: 2.7.10-r1::gentoo, 3.4.3-r1::gentoo
> dev-util/cmake: 3.3.1-r1::gentoo
> dev-util/pkgconfig: 0.28-r2::gentoo
> sys-apps/baselayout: 2.2::gentoo
> sys-apps/openrc: 0.19.1::gentoo
> sys-apps/sandbox: 2.10-r1::gentoo
> sys-devel/autoconf: 2.13::gentoo, 2.69::gentoo
> sys-devel/automake: 1.11.6-r1::gentoo, 1.12.6::gentoo,
> 1.14.1::gentoo, 1.15::gentoo
> sys-devel/binutils: 2.25.1-r1::gentoo
> sys-devel/gcc: 4.9.3::gentoo
> sys-devel/gcc-config: 1.7.3::gentoo
> sys-devel/libtool: 2.4.6::gentoo
> sys-devel/make: 4.1-r1::gentoo
> sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
> sys-libs/glibc: 2.22-r4::gentoo
> Repositories:
>
> gentoo
> location: /usr/portage
> sync-type: rsync
> sync-uri: rsync://rsync.gentoo.org/gentoo-portage
> priority: -1000
>
> science
> location: /var/lib/layman/science
> masters: gentoo
> priority: 0
>
> sage-on-gentoo
> location: /var/lib/layman/sage-on-gentoo
> masters: gentoo science
> priority: 1
>
> myebuild
> location: /var/lib/myebuild
> masters: gentoo
> priority: 2
>
> ACCEPT_KEYWORDS="amd64"
> ACCEPT_LICENSE="* -@EULA"
> CBUILD="x86_64-pc-linux-gnu"
> CFLAGS="-march=native -O2 -pipe"
> CHOST="x86_64-pc-linux-gnu"
> CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc
> /usr/share/config /usr/share/gnupg/qualified.txt"
> CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d
> /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release
> /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo
> /etc/texmf/language.dat.d /etc/texmf/language.def.d
> /etc/texmf/updmap.d /etc/texmf/web2c"
> CXXFLAGS="-march=native -O2 -pipe"
> DISTDIR="/usr/portage/distfiles"
> FCFLAGS="-O2 -pipe"
> FEATURES="assume-digests binpkg-logs config-protect-if-modified
> distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch
> preserve-libs protect-owned sandbox sfperms splitdebug strict
> unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv
> usersandbox usersync xattr"
> FFLAGS="-O2 -pipe"
> GENTOO_MIRRORS="http://distfiles.gentoo.org"
> LANG="en"
> LC_ALL="en"
> LDFLAGS="-Wl,-O1 -Wl,--as-needed"
> MAKEOPTS="-j1"
> PKGDIR="/usr/portage/packages"
> PORTAGE_CONFIGROOT="/"
> PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
> --omit-dir-times --compress --force --whole-file --delete --stats
> --human-readable --timeout=180 --exclude=/distfiles --exclude=/local
> --exclude=/packages --exclude=/.git"
> PORTAGE_TMPDIR="/var/tmp"
> USE="X a52 aac acl acpi afs alsa amd64 berkdb bluetooth branding bzip2
> cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus djvu dri
> dts dvd dvdr dvi emboss encode exif fam firefox flac fortran
> fortran2003 gdbm gif glamor gpm gtk iconv icu ipv6 jpeg kerberos latex
> lcms ldap libnotify lua luatex mad mate mmx mmxext mng modules mp3 mp4
> mpeg multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf
> png policykit ppds qt3support qt4 readline sdl seccomp session spell
> sse sse2 ssl startup-notification svg tcpd tetex tiff truetype udev
> udisks unicode upower usb vim vim-syntax vorbis wxwidgets x264 xattr
> xcb xml xv xvid zlib" ABI_X86="32 64" ALSA_CARDS="ali5451 als4000
> atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371
> es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident
> usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core
> authz_core socache_shmcb unixd actions alias auth_basic authn_alias
> authn_anon authn_dbm authn_default authn_file authz_dbm authz_default
> authz_groupfile authz_host authz_owner authz_user autoindex cache cgi
> cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter
> file_cache filter headers include info log_config logio mem_cache mime
> mime_magic negotiation rewrite setenvif speling status unique_id
> userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan
> sheets stage tables krita karbon braindump author" CAMERAS="ptp2"
> COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog"
> CPU_FLAGS_X86="avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2
> ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore
> fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom
> oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing
> tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux"
> LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb
> ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console
> presenter-minimizer" LINGUAS="en en_US ar de eo es es_ES it af br da
> cy fy he is nds nl oc yi el hr sr" OFFICE_IMPLEMENTATION="libreoffice"
> PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7"
> PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21"
> USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock
> lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee
> tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
> Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK,
> PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS,
> PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
>
Segmentation fault .. nice....
next prev parent reply other threads:[~2016-05-26 2:24 UTC|newest]
Thread overview: 3+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-05-20 13:34 [gentoo-science] Failed emerge for sci-visualization/mayavi-4.4.2 marco restelli
2016-05-26 2:24 ` M. J. Everitt [this message]
2016-05-30 8:54 ` marco restelli
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