From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1QF8l6-00087c-Al for garchives@archives.gentoo.org; Wed, 27 Apr 2011 17:42:40 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id A80651C08D; Wed, 27 Apr 2011 17:32:00 +0000 (UTC) Received: from mail-pz0-f53.google.com (mail-pz0-f53.google.com [209.85.210.53]) by pigeon.gentoo.org (Postfix) with ESMTP id 419621C08D for ; Wed, 27 Apr 2011 17:31:45 +0000 (UTC) Received: by pzk6 with SMTP id 6so1750876pzk.40 for ; Wed, 27 Apr 2011 10:31:41 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=gamma; h=domainkey-signature:message-id:date:from:user-agent:mime-version:to :subject:content-type; bh=Ec1JFh6ADzlU3roOfN6QPWAUy6whB+3Et9dXhDMCA4o=; b=uzpnPJcsdWDWa+cfk/soZ0r/mI/o97ahqD1znMGF1LVS8go6LtHNhrQ4fYRqI6RfoU EbBSCthgGeelrFrZybdT+9RNJGAjSVpbSJIhVN6ftOETPo0wInrsa6hUZ7J8EKmlsuJT YDPXTz9tpsGP3z8vB41Nvnbct0hRU7nhznxrQ= DomainKey-Signature: a=rsa-sha1; c=nofws; d=gmail.com; s=gamma; h=message-id:date:from:user-agent:mime-version:to:subject :content-type; b=vrcvHq0qNdAJnAtr2gMRb1/PKlOcxmb136dUtIiZ9rOJNqLf2+1jgtKEWW8IF8cPkL SjaMZ/P6QQsZkIGGijtKEAvc9Yue4h7+gApQUfD2BMCs3wgJnQpela3XGh0lbTt5EHDK AOSByzjWGHO53cdcZCBRiM56Rz0QrPSfirAJk= Received: by 10.142.152.21 with SMTP id z21mr699470wfd.289.1303925500112; Wed, 27 Apr 2011 10:31:40 -0700 (PDT) Received: from [192.168.1.100] ([27.54.3.234]) by mx.google.com with ESMTPS id p40sm692316wfc.19.2011.04.27.10.31.35 (version=SSLv3 cipher=OTHER); Wed, 27 Apr 2011 10:31:39 -0700 (PDT) Message-ID: <4DB853E3.7020607@gmail.com> Date: Thu, 28 Apr 2011 01:35:31 +0800 From: P Purkayastha User-Agent: Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.9.2.15) Gecko/20110330 Lightning/1.0b2 Thunderbird/3.1.9 Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 To: gentoo-science@lists.gentoo.org Subject: [gentoo-science] failures while trying to build sage Content-Type: multipart/mixed; boundary="------------050103070802000502010909" X-Archives-Salt: X-Archives-Hash: 9c8cf53844e2786f2c933ea177c066d8 This is a multi-part message in MIME format. --------------050103070802000502010909 Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 7bit Hi, I am trying to build sage-4.7_rc0. I encountered two failures: 1. Checksum failure on trying to merge pari. I could work around this by copying pari-2.4.3-r1 to a local overlay and re-digesting the ebuild. The package which failed the digest was elldata.tgz. 2. I have not been able to build sage. Apparently it can not find Python.h. The build log is attached. Here is some more pertinent information: ~ [1] > emerge --info "=sci-mathematics/sage-4.7_rc0" Portage 2.2.0_alpha30 (default/linux/amd64/10.0/desktop/kde, gcc-4.4.5, libc-0-r0, 2.6.38-gentoo-r3 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-2.6.38-gentoo-r3-x86_64-Intel-R-_Core-TM-_i5_CPU_M_460_@_2.53GHz-with-gentoo-2.0.2 Timestamp of tree: Sun, 24 Apr 2011 03:30:01 +0000 app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1::sage-on-gentoo, 3.1.3-r1 dev-util/cmake: 2.8.4 sys-apps/baselayout: 2.0.2 sys-apps/openrc: 0.8.2 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.13, 2.65-r1 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.10 sys-devel/make: 3.81-r2 sys-kernel/linux-headers: 2.6.36.1 virtual/os-headers: 0 Repositories: gentoo enlightenment sage-on-gentoo myself Installed sets: ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/xsessions" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--with-bdeps=y" FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en en_US" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/enlightenment /var/lib/layman/sage-on-gentoo /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac accessibility acl acpi akonadi alsa amd64 bash-completion berkdb branding bzip2 cairo cdda cddb cdr cli consolekit cracklib crypt cups curl curlwrappers cxx dbus djvu dri dts dvd dvdr encode exif fam fbcon ffmpeg flac fontconfig ftp fuse gdbm gdu gif gnutls gphoto2 gpm gstreamer gtk iconv ieee1394 imagemagick jpeg lame latex lcms ldap libsamplerate lzma mad mmap mmx mmx2 mng modules mp3 mp4 mpeg mudflap multilib musepack musicbrainz ncurses networkmanager nls nptl nptlonly ogg opengl openmp oss pam pango pch pcmcia pcre pdf perl plasma png policykit ppds pppd python qt3support qt4 readline savedconfig sdl session smp speex spell sqlite srt sse sse2 ssl ssse3 startup-notification svg sysfs taglib tcpd theora threads tiff truetype udev unicode usb v4l v4l2 vdpau vim-syntax vorbis wicd wifi wmf x264 xattr xcf xcomposite xft xinerama xml xorg xosd xpm xulrunner xv xvid xvmc yv12 zeroconf zlib zsh-completion" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_US" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nvidia vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ~> emerge -pqv "=sci-mathematics/sage-4.7_rc0" [ebuild N ] sci-mathematics/sage-4.7_rc0 USE="latex mpc -examples -maximalib -testsuite" ~> Other packages from sage-on-gentoo that are in package.use. I didn't realize that there is USE file that could be symlinked or copied. So, I just tried emerge several times and added the USEs necessary. All the packages below have successfully merged, except for sage. # From /etc/portage/package.use sci-mathematics/pari sage data gmp dev-lang/python sage sci-libs/linbox sage ntl sci-mathematics/polybori sage sci-mathematics/eclib pari24 sci-mathematics/lcalc pari24 sci-mathematics/sympow pari24 sci-mathematics/glpk gmp dev-python/pycrypto gmp dev-python/mpmath gmp matplotlib dev-lisp/ecls -unicode sci-mathematics/maxima -unicode ecls sci-libs/flint ntl dev-python/cvxopt glpk dev-python/sympy ipython imaging sci-mathematics/sage mpc dev-lang/R lapack --------------050103070802000502010909 Content-Type: text/plain; name="sage.build.log.txt" Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename="sage.build.log.txt" ICogUGFja2FnZTogICAgc2NpLW1hdGhlbWF0aWNzL3NhZ2UtNC43X3JjMAogKiBSZXBvc2l0 b3J5OiBzYWdlLW9uLWdlbnRvbwogKiBNYWludGFpbmVyOiBzY2lAZ2VudG9vLm9yZwogKiBV U0U6ICAgICAgICBhbWQ2NCBjb25zb2xla2l0IGVsaWJjX2dsaWJjIGtlcm5lbF9saW51eCBs YXRleCBtcGMgbXVsdGlsaWIgcG9saWN5a2l0IHVzZXJsYW5kX0dOVQogKiBGRUFUVVJFUzog ICBwcmVzZXJ2ZS1saWJzIHNhbmRib3gKPj4+IBtbMW0bWzM3bWNmZy11cGRhdGUtMS44LjIt cjEbWzBtG1swbTogQ3JlYXRpbmcgY2hlY2tzdW0gaW5kZXguLi4KICogQXBwbHlpbmcgc2Fn ZS00LjYuMS1leHAtc2l0ZS1wYWNrYWdlcy5wYXRjaCAuLi4KIFsgb2sgXQogKiBBcHBseWlu ZyB0cmFjXzExMjM2LXRlc3RfZXFfZm9yX3B5dGhvbl8yXzctbnQucGF0Y2ggLi4uCiBbIG9r IF0KICogQXBwbHlpbmcgdHJhY18xMTI0NF9yZWVuYWJsZV9kZXByZWNhdGlvbndhcm5pbmdz X2luX3B5dGhvbjI3LnBhdGNoIC4uLgogWyBvayBdCiAqIEFwcGx5aW5nIHRyYWNfMTEyNDRf Zml4X2NvbWJpbmF0cGFydGl0aW9uX3dhcm5pbmdzLnBhdGNoIC4uLgogWyBvayBdCiAqIEFw cGx5aW5nIHRyYWNfMTEyNDRfZml4bW9yZWRlcHJlY2F0aW9uc3dhcm5pbmdzLnBhdGNoIC4u LgogWyBvayBdCiAqIEFwcGx5aW5nIHNhZ2UtNC40LjItZmxpbnQucGF0Y2ggLi4uCiBbIG9r IF0KICogQXBwbHlpbmcgc2FnZS00LjUuMS1maXgtcWVwY2FkLXBhdGgucGF0Y2ggLi4uCiBb IG9rIF0KICogQXBwbHlpbmcgc2FnZS00LjYtZml4LVNBR0VfTE9DQUwucGF0Y2ggLi4uCiBb IG9rIF0KcHl0aG9uMi43IHNldHVwLnB5IGJ1aWxkCkJ1aWxkaW5nIGludGVycHJldGVycyBm b3IgZmFzdF9jYWxsYWJsZQpVcGRhdGluZyBDeXRob24gY29kZS4uLi4KVHJhY2ViYWNrICht b3N0IHJlY2VudCBjYWxsIGxhc3QpOgogIEZpbGUgInNldHVwLnB5IiwgbGluZSA4NzksIGlu IDxtb2R1bGU+CiAgICBxdWV1ZSA9IGNvbXBpbGVfY29tbWFuZF9saXN0KGV4dF9tb2R1bGVz LCBkZXBzKQogIEZpbGUgInNldHVwLnB5IiwgbGluZSA4MzksIGluIGNvbXBpbGVfY29tbWFu ZF9saXN0CiAgICBkZXBfZmlsZSwgZGVwX3RpbWUgPSBkZXBzLm5ld2VzdF9kZXAoZixtKQog IEZpbGUgInNldHVwLnB5IiwgbGluZSA3NDYsIGluIG5ld2VzdF9kZXAKICAgIGZvciBmIGlu IHNlbGYuYWxsX2RlcHMoZmlsZW5hbWUsIGV4dF9tb2R1bGUpOgogIEZpbGUgInNldHVwLnB5 IiwgbGluZSA3MjksIGluIGFsbF9kZXBzCiAgICBkZXBzLnVwZGF0ZShzZWxmLmFsbF9kZXBz KGYsIGV4dF9tb2R1bGUsIHBhdGgpKQogIEZpbGUgInNldHVwLnB5IiwgbGluZSA3MjksIGlu IGFsbF9kZXBzCiAgICBkZXBzLnVwZGF0ZShzZWxmLmFsbF9kZXBzKGYsIGV4dF9tb2R1bGUs IHBhdGgpKQogIEZpbGUgInNldHVwLnB5IiwgbGluZSA3MjksIGluIGFsbF9kZXBzCiAgICBk ZXBzLnVwZGF0ZShzZWxmLmFsbF9kZXBzKGYsIGV4dF9tb2R1bGUsIHBhdGgpKQogIEZpbGUg InNldHVwLnB5IiwgbGluZSA3MjksIGluIGFsbF9kZXBzCiAgICBkZXBzLnVwZGF0ZShzZWxm LmFsbF9kZXBzKGYsIGV4dF9tb2R1bGUsIHBhdGgpKQogIEZpbGUgInNldHVwLnB5IiwgbGlu ZSA3MjksIGluIGFsbF9kZXBzCiAgICBkZXBzLnVwZGF0ZShzZWxmLmFsbF9kZXBzKGYsIGV4 dF9tb2R1bGUsIHBhdGgpKQogIEZpbGUgInNldHVwLnB5IiwgbGluZSA3MjksIGluIGFsbF9k ZXBzCiAgICBkZXBzLnVwZGF0ZShzZWxmLmFsbF9kZXBzKGYsIGV4dF9tb2R1bGUsIHBhdGgp KQogIEZpbGUgInNldHVwLnB5IiwgbGluZSA3MjcsIGluIGFsbF9kZXBzCiAgICBmb3IgZiBp biBzZWxmLmltbWVkaWF0ZV9kZXBzKGZpbGVuYW1lLCBleHRfbW9kdWxlKToKICBGaWxlICJz ZXR1cC5weSIsIGxpbmUgNzA5LCBpbiBpbW1lZGlhdGVfZGVwcwogICAgc2VsZi5fZGVwc1tm aWxlbmFtZV0gPSBzZWxmLnBhcnNlX2RlcHMoZmlsZW5hbWUsIGV4dF9tb2R1bGUpCiAgRmls ZSAic2V0dXAucHkiLCBsaW5lIDY5NywgaW4gcGFyc2VfZGVwcwogICAgcmFpc2UgSU9FcnJv ciwgbXNnCklPRXJyb3I6IGNvdWxkIG5vdCBmaW5kIGRlcGVuZGVuY3kgUHl0aG9uLmggaW5j bHVkZWQgaW4gc2FnZS9leHQvcHl0aG9uX29iamVjdC5weGkuCiAqIEVSUk9SOiBzY2ktbWF0 aGVtYXRpY3Mvc2FnZS00LjdfcmMwIGZhaWxlZCAoY29tcGlsZSBwaGFzZSk6CiAqICAgQnVp bGRpbmcgZmFpbGVkCiAqIAogKiBDYWxsIHN0YWNrOgogKiAgICAgZWJ1aWxkLnNoLCBsaW5l ICAgNTY6ICBDYWxsZWQgc3JjX2NvbXBpbGUKICogICBlbnZpcm9ubWVudCwgbGluZSA1NjE4 OiAgQ2FsbGVkIGRpc3R1dGlsc19zcmNfY29tcGlsZQogKiAgIGVudmlyb25tZW50LCBsaW5l IDE2MjQ6ICBDYWxsZWQgZGllCiAqIFRoZSBzcGVjaWZpYyBzbmlwcGV0IG9mIGNvZGU6CiAq ICAgICAgICAgICAgICAgIiQoUFlUSE9OKSIgIiR7c2V0dXBfZmlsZSMqfH0iICIke19ESVNU VVRJTFNfR0xPQkFMX09QVElPTlNbQF19IiBidWlsZCAiJEAiIHx8IGRpZSAiQnVpbGRpbmcg ZmFpbGVkIjsKICogCiAqIElmIHlvdSBuZWVkIHN1cHBvcnQsIHBvc3QgdGhlIG91dHB1dCBv ZiAnZW1lcmdlIC0taW5mbyA9c2NpLW1hdGhlbWF0aWNzL3NhZ2UtNC43X3JjMCcsCiAqIHRo ZSBjb21wbGV0ZSBidWlsZCBsb2cgYW5kIHRoZSBvdXRwdXQgb2YgJ2VtZXJnZSAtcHF2ID1z Y2ktbWF0aGVtYXRpY3Mvc2FnZS00LjdfcmMwJy4KICogVGhpcyBlYnVpbGQgaXMgZnJvbSBh biBvdmVybGF5IG5hbWVkICdzYWdlLW9uLWdlbnRvbyc6ICcvdmFyL2xpYi9sYXltYW4vc2Fn ZS1vbi1nZW50b28vJwogKiBUaGUgY29tcGxldGUgYnVpbGQgbG9nIGlzIGxvY2F0ZWQgYXQg Jy92YXIvdG1wL3BvcnRhZ2Uvc2NpLW1hdGhlbWF0aWNzL3NhZ2UtNC43X3JjMC90ZW1wL2J1 aWxkLmxvZycuCiAqIFRoZSBlYnVpbGQgZW52aXJvbm1lbnQgZmlsZSBpcyBsb2NhdGVkIGF0 ICcvdmFyL3RtcC9wb3J0YWdlL3NjaS1tYXRoZW1hdGljcy9zYWdlLTQuN19yYzAvdGVtcC9l bnZpcm9ubWVudCcuCiAqIFM6ICcvdmFyL3RtcC9wb3J0YWdlL3NjaS1tYXRoZW1hdGljcy9z YWdlLTQuN19yYzAvd29yay9zYWdlLTQuNy5yYzAnCg== --------------050103070802000502010909--