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Date: Fri, 13 Jul 2007 14:28:17 -0400
From: "Carmelo Piccione" <carmelo.piccione@gmail.com>
To: gentoo-science@lists.gentoo.org
Subject: Re: [gentoo-science] problems compiling freemat from science overlay
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I think I addressed this exact issue in a previous thread. See this:
http://www.mail-archive.com/gentoo-science@lists.gentoo.org/msg00497.html
- Carmelo
On 7/13/07, Pablo De Napoli <pdenapo@yahoo.com> wrote:
>
> Hi
>
> I'm having problems compiling sci-mathematics/freemat-3.2 from science
> overlay.
> (on a Gentoo/x86 host)
>
> My error mesages are reported below:
>
> I'm using
>
> gcc-4.1.2
> binutils-2.17
>
> My USE flags (reported by emerge -p sci-mathematics/freemat) are
>
> USE="arpack fftw ncurses umfpack -ffcall"
>
> Any help is wellcome!
>
> best regards.
> Pablo
>
> PD: I don't know where should I report the bugs in the science overlay
> package. In list
> list? In bugzilla?
> In the gentoo science site? (which seems to be broken, gives "internal
> server error")
>
> Here are the error messages
>
> Making all in src
> make[1]: Entering directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> make all-am
> make[2]: Entering directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> i686-pc-linux-gnu-g++ -O3 -march=athlon -funroll-loops -pipe
> -fomit-frame-pointer -o
> FreeMat application.o FuncMode.o FuncTerminal.o MainApp.o main.o
> DumbTerminal.o
> Terminal.o application.moc.o FuncMode.moc.o MainApp.moc.o Terminal.moc.o
> DumbTerminal.moc.o FreeMat_qrc.o ..//libs/libCore/libCore.a
> ..//libs/libFN/libFN.a
> ..//libs/libGraphics/libGraphics.a ..//libs/libFreeMat/libFreeMat.a
> ..//libs/libXP/libXP.a ..//libs/libMex/libMex.a -L/usr/lib/qt4 -lQtOpenGL
> -lGLU -lGL
> -lQtGui -laudio -lXt -lpng -lSM -lICE -lXrender -lXrandr -lXfixes
> -lXcursor -lfreetype
> -lfontconfig -lXext -lX11 -lQtNetwork -lQtXml -lQtCore -lz -lm -lrt
> -lpthread -ldl -lz
> -larpack -lfftw3 -lfftw3f -lumfpack -lamd -llapack -lblas
> -lpcre -lncurses
> -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2
> -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib
> -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lncurses -lgfortranbegin
> -lgfortran -lm
> -lgcc_s
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_ge_complex<float>(float, float, float, float)':
> Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<float>(float, float, float, float)]+0x13): undefined
> reference to `float
> complex_abs<float>(float, float)'
> Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<float>(float, float, float, float)]+0x2b): undefined
> reference to `float
> complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_le_complex<float>(float, float, float, float)':
> Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> slo_le_complex<float>(float, float, float, float)]+0x13): undefined
> reference to `float
> complex_abs<float>(float, float)'
> Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
> slo_le_complex<float>(float, float, float, float)]+0x2b): undefined
> reference to `float
> complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_gt_complex<float>(float, float, float, float)':
> Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned int
> slo_gt_complex<float>(float, float, float, float)]+0x13): undefined
> reference to `float
> complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> (.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned
> int slo_gt_complex<float>(float, float, float, float)]+0x2b): more
> undefined references
> to `float complex_abs<float>(float, float)' follow
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_ge_complex<double>(double, double, double, double)':
> Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<double>(double, double, double, double)]+0x23): undefined
> reference to
> `double complex_abs<double>(double, double)'
> Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int
> slo_ge_complex<double>(double, double, double, double)]+0x3b): undefined
> reference to
> `double complex_abs<double>(double, double)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_le_complex<double>(double, double, double, double)':
> Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> slo_le_complex<double>(double, double, double, double)]+0x23): undefined
> reference to
> `double complex_abs<double>(double, double)'
> Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
> slo_le_complex<double>(double, double, double, double)]+0x3b): undefined
> reference to
> `double complex_abs<double>(double, double)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
> slo_gt_complex<double>(double, double, double, double)':
> Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned int
> slo_gt_complex<double>(double, double, double, double)]+0x23): undefined
> reference to
> `double complex_abs<double>(double, double)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:
> (.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned
> int slo_gt_complex<double>(double, double, double, double)]+0x3b): more
> undefined
> references to `double complex_abs<double>(double, double)' follow
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `float**
> SparseAbsFunctionComplex<float>(int, int, float const**)':
> Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIfEPPT_iiPPKS0_[float**
> SparseAbsFunctionComplex<float>(int, int, float const**)]+0x17a):
> undefined reference to
> `float complex_abs<float>(float, float)'
> ..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `double**
> SparseAbsFunctionComplex<double>(int, int, double const**)':
> Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIdEPPT_iiPPKS0_[double**
> SparseAbsFunctionComplex<double>(int, int, double const**)]+0x17a):
> undefined reference
> to `double complex_abs<double>(double, double)'
> collect2: ld returned 1 exit status
> make[2]: *** [FreeMat] Error 1
> make[2]: Leaving directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory
> `/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'
> make: *** [all-recursive] Error 1
>
>
>
>
>
> ____________________________________________________________________________________
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> FareChase.
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>
>
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<div>I think I addressed this exact issue in a previous thread. See this:</div>
<div> </div>
<div><a href="http://www.mail-archive.com/gentoo-science@lists.gentoo.org/msg00497.html">http://www.mail-archive.com/gentoo-science@lists.gentoo.org/msg00497.html</a><br><br>- Carmelo</div>
<div> </div>
<div><span class="gmail_quote">On 7/13/07, <b class="gmail_sendername">Pablo De Napoli</b> <<a href="mailto:pdenapo@yahoo.com">pdenapo@yahoo.com</a>> wrote:</span>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">Hi<br><br>I'm having problems compiling sci-mathematics/freemat-3.2 from science overlay.<br>(on a Gentoo/x86 host)
<br><br>My error mesages are reported below:<br><br>I'm using<br><br>gcc-4.1.2<br>binutils-2.17<br><br>My USE flags (reported by emerge -p sci-mathematics/freemat) are<br><br>USE="arpack fftw ncurses umfpack -ffcall"
<br><br>Any help is wellcome!<br><br>best regards.<br>Pablo<br><br>PD: I don't know where should I report the bugs in the science overlay package. In list<br>list? In bugzilla?<br>In the gentoo science site? (which seems to be broken, gives "internal server error")
<br><br>Here are the error messages<br><br>Making all in src<br>make[1]: Entering directory<br>`/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'<br>make all-am<br>make[2]: Entering directory<br>`/var/tmp/portage/sci-mathematics/freemat-
3.2/work/FreeMat-3.2/src'<br>i686-pc-linux-gnu-g++ -O3 -march=athlon -funroll-loops -pipe -fomit-frame-pointer -o<br>FreeMat application.o FuncMode.o FuncTerminal.o MainApp.o main.o DumbTerminal.o<br>Terminal.o
application.moc.o FuncMode.moc.o MainApp.moc.o Terminal.moc.o<br>DumbTerminal.moc.o FreeMat_qrc.o ..//libs/libCore/libCore.a ..//libs/libFN/libFN.a<br>..//libs/libGraphics/libGraphics.a ..//libs/libFreeMat/libFreeMat.a<br>
..//libs/libXP/libXP.a ..//libs/libMex/libMex.a -L/usr/lib/qt4 -lQtOpenGL -lGLU -lGL<br>-lQtGui -laudio -lXt -lpng -lSM -lICE -lXrender -lXrandr -lXfixes -lXcursor -lfreetype<br>-lfontconfig -lXext -lX11 -lQtNetwork -lQtXml -lQtCore -lz -lm -lrt -lpthread -ldl -lz
<br>-larpack -lfftw3 -lfftw3f -lumfpack -lamd -llapack -lblas -lpcre -lncurses<br>-L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2<br>-L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib<br>-L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lncurses -lgfortranbegin -lgfortran -lm
<br>-lgcc_s<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int<br>slo_ge_complex<float>(float, float, float, float)':<br>Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int<br>
slo_ge_complex<float>(float, float, float, float)]+0x13): undefined reference to `float<br>complex_abs<float>(float, float)'<br>Sparse.cpp:(.text._Z14slo_ge_complexIfEjT_S0_S0_S0_[unsigned int<br>slo_ge_complex<float>(float, float, float, float)]+0x2b): undefined reference to `float
<br>complex_abs<float>(float, float)'<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int<br>slo_le_complex<float>(float, float, float, float)':<br>Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int
<br>slo_le_complex<float>(float, float, float, float)]+0x13): undefined reference to `float<br>complex_abs<float>(float, float)'<br>Sparse.cpp:(.text._Z14slo_le_complexIfEjT_S0_S0_S0_[unsigned int<br>slo_le_complex<float>(float, float, float, float)]+0x2b): undefined reference to `float
<br>complex_abs<float>(float, float)'<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int<br>slo_gt_complex<float>(float, float, float, float)':<br>Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned int
<br>slo_gt_complex<float>(float, float, float, float)]+0x13): undefined reference to `float<br>complex_abs<float>(float, float)'<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:(.text._Z14slo_gt_complexIfEjT_S0_S0_S0_[unsigned
<br>int slo_gt_complex<float>(float, float, float, float)]+0x2b): more undefined references<br>to `float complex_abs<float>(float, float)' follow<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
<br>slo_ge_complex<double>(double, double, double, double)':<br>Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int<br>slo_ge_complex<double>(double, double, double, double)]+0x23): undefined reference to
<br>`double complex_abs<double>(double, double)'<br>Sparse.cpp:(.text._Z14slo_ge_complexIdEjT_S0_S0_S0_[unsigned int<br>slo_ge_complex<double>(double, double, double, double)]+0x3b): undefined reference to
<br>`double complex_abs<double>(double, double)'<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int<br>slo_le_complex<double>(double, double, double, double)':<br>Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
<br>slo_le_complex<double>(double, double, double, double)]+0x23): undefined reference to<br>`double complex_abs<double>(double, double)'<br>Sparse.cpp:(.text._Z14slo_le_complexIdEjT_S0_S0_S0_[unsigned int
<br>slo_le_complex<double>(double, double, double, double)]+0x3b): undefined reference to<br>`double complex_abs<double>(double, double)'<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `unsigned int
<br>slo_gt_complex<double>(double, double, double, double)':<br>Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned int<br>slo_gt_complex<double>(double, double, double, double)]+0x23): undefined reference to
<br>`double complex_abs<double>(double, double)'<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o):Sparse.cpp:(.text._Z14slo_gt_complexIdEjT_S0_S0_S0_[unsigned<br>int slo_gt_complex<double>(double, double, double, double)]+0x3b): more undefined
<br>references to `double complex_abs<double>(double, double)' follow<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `float**<br>SparseAbsFunctionComplex<float>(int, int, float const**)':<br>
Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIfEPPT_iiPPKS0_[float**<br>SparseAbsFunctionComplex<float>(int, int, float const**)]+0x17a): undefined reference to<br>`float complex_abs<float>(float, float)'
<br>..//libs/libFreeMat/libFreeMat.a(Sparse.o): In function `double**<br>SparseAbsFunctionComplex<double>(int, int, double const**)':<br>Sparse.cpp:(.text._Z24SparseAbsFunctionComplexIdEPPT_iiPPKS0_[double**<br>
SparseAbsFunctionComplex<double>(int, int, double const**)]+0x17a): undefined reference<br>to `double complex_abs<double>(double, double)'<br>collect2: ld returned 1 exit status<br>make[2]: *** [FreeMat] Error 1
<br>make[2]: Leaving directory<br>`/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-3.2/src'<br>make[1]: *** [all] Error 2<br>make[1]: Leaving directory<br>`/var/tmp/portage/sci-mathematics/freemat-3.2/work/FreeMat-
3.2/src'<br>make: *** [all-recursive] Error 1<br><br><br><br><br>____________________________________________________________________________________<br>Looking for a deal? Find great prices on flights and hotels with Yahoo! FareChase.
<br><a href="http://farechase.yahoo.com/">http://farechase.yahoo.com/</a><br>--<br><a href="mailto:gentoo-science@gentoo.org">gentoo-science@gentoo.org</a> mailing list<br><br></blockquote></div><br>
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