From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from lists.gentoo.org ([140.105.134.102] helo=robin.gentoo.org) by nuthatch.gentoo.org with esmtp (Exim 4.62) (envelope-from ) id 1HLTvL-0002LM-8y for garchives@archives.gentoo.org; Mon, 26 Feb 2007 00:41:03 +0000 Received: from robin.gentoo.org (localhost [127.0.0.1]) by robin.gentoo.org (8.14.0/8.14.0) with SMTP id l1Q0e5Gi015316; Mon, 26 Feb 2007 00:40:05 GMT Received: from rwcrmhc11.comcast.net (rwcrmhc11.comcast.net [216.148.227.151]) by robin.gentoo.org (8.14.0/8.14.0) with ESMTP id l1Q0e3vE015287 for ; Mon, 26 Feb 2007 00:40:04 GMT Received: from [24.22.125.13] (c-24-22-125-13.hsd1.or.comcast.net[24.22.125.13]) by comcast.net (rwcrmhc11) with ESMTP id <20070226004002m1100jh838e>; Mon, 26 Feb 2007 00:40:02 +0000 Message-ID: <45E22C1F.8040805@cesmail.net> Date: Sun, 25 Feb 2007 16:38:55 -0800 From: "M. Edward (Ed) Borasky" User-Agent: Thunderbird 2.0b2 (X11/20070208) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 To: gentoo-science@lists.gentoo.org Subject: Re: [gentoo-science] lapack 3.0? References: <200702241007.46155.gentoo@matthewlee.org> <45E0B340.9050204@a3.epfl.ch> <200702251718.21765.gentoo@matthewlee.org> In-Reply-To: <200702251718.21765.gentoo@matthewlee.org> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Content-Transfer-Encoding: quoted-printable X-MIME-Autoconverted: from 8bit to quoted-printable by robin.gentoo.org id l1Q0e5H8015316 X-Archives-Salt: 6e60ab3f-4d20-434c-9dd8-db04c6159189 X-Archives-Hash: d57b2a14d9ecbc79f5681bb0dd768515 Matthew R. Lee wrote: > On Saturday 24 February 2007 18:50, Patrice Beaud wrote: > =20 >> Matthew R. Lee a =E9crit : >> =20 >>> I've just installed the science overlay because I want to use rkward >>> However when I try "emerge -pv rkward" it tells me there are no ebuil= ds >>> to satisfy ">=3Dsci-libs/lapack-3.0" >>> This is the first time I've used an overlay, so is this a bug in the >>> ebuild of rkward or am I missing something? >>> >>> Matt >>> =20 >> It seems like the ebuild is outdated... (Note: I didn't know however >> RKward existed. Thank you!) >> >> I make a: >> cp -a /usr/portage/local/layman/science/sci-mathematics/rkward/ >> /usr/local/portage/sci-mathematics/ >> >> Change the name of the ebuild from rkward-0.3.7_pre1.ebuild to >> rkward-0.4.6.ebuild. >> >> >> Modify the ebuild: >> >> 10c10 >> < SRC_URI=3D"http://rkward.sourceforge.net/temp/rkward-0.3.7pre1.tar.g= z" >> --- >> >> > SRC_URI=3D"mirror://sourceforge/${PN}/${P}.tar.gz" >> >> 17c17 >> < DEPEND=3D">=3Dsci-libs/lapack-3.0 >> --- >> >> > DEPEND=3D">=3Dvirtual/lapack-3.0 >> >> 27c27 >> < mv rkward-0.3.7pre1 rkward-0.3.7_pre1 || die >> --- >> >> > # mv rkward-0.3.7pre1 rkward-0.3.7_pre1 || die >> >> run >> ebuild /usr/local/portage/sci-mathematics/rkward/rkward-0.4.6.ebuild d= igest >> >> >> I started emerging and it stops with a sandbox violation: >> --------------------------- ACCESS VIOLATION SUMMARY >> --------------------------- >> LOG FILE =3D >> "/var/log/sandbox/sandbox-sci-mathematics_-_rkward-0.4.6-14654.log" >> >> open_wr: /usr/qt/3/etc/settings/.qtrc.lock >> open_wr: /usr/qt/3/etc/settings/.qtrc.lock >> ----------------------------------------------------------------------= ----- >> ----- >> >> I continue without sandbox... :-( >> RKward was installed and it works. >> >> >> Thank you (I can try R) and Good luck ! >> Patrice >> =20 > > Patrice, > Thanks for the help. I made some modifications to the ebuild and I too= now=20 > have rkward-0.4.6 running. I didn't encounter the same problem with th= e sand=20 > box, which is just as well as I don't know how to run an ebuild without= the=20 > sandbox :-) > Given that this ebuild is a. out of date, and b. doesn't work. Is ther= e=20 > anyone maintaining it? I would volunteer, but I have zero experience o= f=20 > putting ebuilds together. If someone who knows what they are doing was= =20 > available on the end of the email to answer my (bleedin' obvious questi= ons,=20 > I'm just a marine ecologist :-)) I'd give it a go. I'd like to learn h= ow to=20 > create ebuilds as there are other packages in addition to rkward that I= 'd=20 > like to see in the tree, like xtides > > Matt=20 > =20 I'm a little curious about something ... does "rkward" actually require=20 an external Lapack, or is this optional? The reason I ask is that R=20 itself *contains* a copy of Lapack, and the R developers have deprecated=20 linking against external Lapack libraries! --=20 M. Edward (Ed) Borasky, FBG, AB, PTA, PGS, MS, MNLP, NST, ACMC(P) http://borasky-research.blogspot.com/ If God had meant for carrots to be eaten cooked, He would have given rabb= its fire. --=20 gentoo-science@gentoo.org mailing list