From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1QvQJO-0001NP-M3 for garchives@archives.gentoo.org; Mon, 22 Aug 2011 08:56:50 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 78BA821C150; Mon, 22 Aug 2011 08:56:41 +0000 (UTC) Received: from mailgate-01.zdv.uni-mainz.de (mailgate-01.zdv.Uni-Mainz.DE [134.93.178.241]) by pigeon.gentoo.org (Postfix) with ESMTP id 4ABC521C10D for ; Mon, 22 Aug 2011 08:56:32 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=uni-mainz.de; i=cschwan@students.uni-mainz.de; q=dns/txt; s=ironport; t=1314003392; x=1345539392; h=from:to:subject:date:message-id:in-reply-to:references: mime-version:content-transfer-encoding; bh=CnJAAwfZSrmiFIsKroUChLQMvKEteOhIZ1zJj9Zn0ds=; b=Fm53j56erMOkE4p3BYwWIDzW1xlUtA7aJTL2p01BKrHLMERTRcKY/ux3 Os6kpkvopHE9KFcxpQaCOcKz/56e/MeVF91p3gF0DrPzPR8FA2sRch/0y 5cD7ZV4c5eUfMa3m3B058xjoGiA8e3X+igTFhW7hDGDXV0qeoyo+hl03k A=; X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: AgkmAGMYUk4KXgZQ/2dsb2JhbABBhwGRc5AWgUABAQU6TwsYCRUQDwERNgYTCYdstG+GSASYKYRhhwI Received: from e14hub-01.zdv.uni-mainz.de ([10.94.6.80]) by mailgate-01.zdv.uni-mainz.de with ESMTP; 22 Aug 2011 10:56:31 +0200 Received: from cschwan-laptop.localnet (134.93.81.192) by mail.uni-mainz.de (10.94.6.82) with Microsoft SMTP Server (TLS) id 14.1.289.1; Mon, 22 Aug 2011 10:56:31 +0200 From: Christopher Schwan To: Subject: Re: [gentoo-science] Can not run sage-notebook Date: Mon, 22 Aug 2011 10:56:30 +0200 Message-ID: <4310572.Ch0ui68j1t@cschwan-laptop> Organization: Institut =?UTF-8?B?ZsO8ciBQaHlzaWssIEpvaGFubmVzLUd1dGVuYmVyZyBVbml2ZXJzaXTDpHQ=?= Mainz User-Agent: KMail/4.7.0 (Linux/2.6.39-gentoo-r3; KDE/4.7.0; x86_64; ; ) In-Reply-To: <4E51C5B7.20603@gmail.com> References: <4E51295A.6060005@gmail.com> <20110822115919.owg08g0o000oo4wg@webmail.slingshot.co.nz> <4E51C5B7.20603@gmail.com> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Transfer-Encoding: 7Bit Content-Type: text/plain; charset="us-ascii" X-Originating-IP: [134.93.81.192] X-Archives-Salt: X-Archives-Hash: f85f8783d8366ef05ba6fac9d14cb455 On Monday 22 August 2011 10:57:59 P Purkayastha wrote: > On 08/22/2011 07:59 AM, fbissey@slingshot.co.nz wrote: > > Quoting P Purkayastha : > >> On 08/22/2011 06:48 AM, fbissey@slingshot.co.nz wrote: > >>> Quoting P Purkayastha : > >>>> Indeed cython was not rebuilt after/during the update of sage. > >>>> Rebuilding it doesn't make any difference. Still get the same > >>>> errors. > >>>> eix output just before remerging cython: > >>>> > >>>> [I] dev-python/cython > >>>> Available versions: 0.14.1 0.14.1-r1[1] {doc examples} > >>>> Installed versions: 0.14.1-r1[1](10:34:40 PM 08/05/2011)(-doc > >>>> -examples) > >>>> Homepage: http://www.cython.org/ > >>>> http://pypi.python.org/pypi/Cython > >>>> Description: The Cython compiler for writing C extensions > >>>> for the Python language > >>> > >>> Did you follow up with a rebuild of pynac, sage-clib and sage? > >>> > >>> Francois > >> > >> I haev tried rebuilding pynac, sage-clib, sage, sage-baselayout and > >> sage-notebook. The error persists. > >> > >> > >> ~> genlop -l --date 3 hours ago > >> * dev-python/cython > >> > >> Mon Aug 22 06:05:25 2011 >>> dev-python/cython-0.14.1-r1 > >> Mon Aug 22 06:56:32 2011 >>> sci-libs/pynac-0.2.3 > >> Mon Aug 22 06:56:58 2011 >>> sci-mathematics/sage-clib-4.7.1 > >> Mon Aug 22 07:09:34 2011 >>> sci-mathematics/sage-4.7.1 > >> Mon Aug 22 07:12:48 2011 >>> dev-lang/yasm-1.1.0-r1 > >> Mon Aug 22 07:14:55 2011 >>> sci-mathematics/sage-notebook-0.8.19 > >> Mon Aug 22 07:15:30 2011 >>> sci-mathematics/sage-baselayout-4.7.1 > >> ~> > > > > OK let's look at some other things: > > printenv | grep SAGE > > ~> env | grep SAGE > SAGE_DATA=/usr/share/sage/data > SAGE_DOC=/usr/share/sage/devel/sage/doc > SAGE_ROOT=/usr/share/sage > SAGE_LOCAL=/usr > > > eix ipython > > ~> eix ipython > [I] dev-python/ipython > Available versions: 0.10 0.10.1 0.10.2 {doc emacs examples > gnuplot readline smp test wxwidgets} > Installed versions: 0.10.2(02:29:03 AM 05/20/2011)(readline smp > -doc -emacs -examples -gnuplot -test -wxwidgets) > Homepage: http://ipython.scipy.org/ > http://pypi.python.org/pypi/ipython > Description: An interactive computing environment for Python > > > What is your current shell? > > /bin/zsh > Running > exec bash > sage > > doesn't make any difference. > > > Outout of "sage -gdb" if you installed with the debug useflag. > > Did you install the testsuite (useflag of the same name). > > Unfortunately, I didnt' compile either of them. Will do that later tonight. > > > Francois > > Thanks for patiently helping. :) Hi, Francois was right - compiling without the testsuite yields the same behavior on my box. So for the time being, USE=testsuite emerge -1 sage-baselayout USE=testsuite emerge -1 sage solves the problem. Any ideas which files are removed with USE=-testsuite but still needed ? Cheers, Christopher