From: fbissey@slingshot.co.nz
To: gentoo-science@lists.gentoo.org
Subject: Re: [gentoo-science] [sage-on-gentoo] dependencies conflict
Date: Sun, 02 Jun 2013 23:18:35 +1200 [thread overview]
Message-ID: <20130602231835.8gs0k40oocwk4kwo@webmail.slingshot.co.nz> (raw)
In-Reply-To: <20130602225858.4kcs0ksowoswks0g@webmail.slingshot.co.nz>
Quoting fbissey@slingshot.co.nz:
> Quoting v_2e@ukr.net:
>
>> Hello, Francois!
>>
>> On Sun, 02 Jun 2013 22:07:54 +1200
>> fbissey@slingshot.co.nz wrote:
>>
>>> I think it may be because you have cython in your world file. Can you
>>> try the following:
>>> emerge --deselect cython
>>
>> The output of
>>
>> grep cython /var/lib/portage/world
>>
>> is empty.
>>
>>> then try to merge again. If the problem persist I want the output of
>>> emerge -ptuDv sage
>>>
>>
>> $ emerge -ptuDv sage
>>
>> These are the packages that would be merged, in reverse order:
>>
>> Calculating dependencies... done!
>> [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo
>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>> PYTHON_TARGETS="python2_7"
>> [nomerge ] dev-lisp/ecls-12.12.1::sage-on-gentoo USE="X
>> threads unicode -debug -emacs -gengc -precisegc"
>> [ebuild U ] dev-lisp/gentoo-init-1.0 [0.1] 0 kB
>> [nomerge ] dev-lisp/gentoo-init-1.0 [0.1]
>> [nomerge ] dev-lisp/asdf-3.0.1:0/3.0.1 [1.89:0/0] USE="-doc%
>> (-examples%)"
>> [blocks b ] dev-lisp/asdf-binary-locations
>> ("dev-lisp/asdf-binary-locations" is blocking dev-lisp/asdf-3.0.1)
>> [uninstall ] dev-lisp/asdf-binary-locations-20061018
>> [ebuild N ] dev-lisp/uiop-3.0.1 380 kB
>> [ebuild U ] dev-lisp/asdf-3.0.1:0/3.0.1 [1.89:0/0]
>> USE="-doc% (-examples%)" 0 kB
>> [ebuild U ] sci-mathematics/sage-5.9::sage-on-gentoo
>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>> PYTHON_TARGETS="python2_7" 59,992 kB
>> [ebuild U ] dev-python/cvxopt-1.1.6::sage-on-gentoo
>> [1.1.5-r2::gentoo] USE="dsdp fftw glpk gsl -doc -examples"
>> PYTHON_TARGETS="python2_7 python3_2%* -python2_6" 3,275 kB
>> [ebuild U ] sci-mathematics/sage-doc-5.9::sage-on-gentoo
>> [5.8-r2::sage-on-gentoo] USE="html pdf" 72,019 kB
>> [ebuild U ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk
>> gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk
>> -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6%
>> -python3_1% -python3_3%" 37,546 kB
>> [ebuild U ] sci-libs/scipy-0.12.0 [0.11.0-r1] USE="-doc
>> -sparse% {-test} (-umfpack%)" PYTHON_TARGETS="python2_7 python3_2%*
>> -python2_5 -python2_6 -python3_3%" 8,883 kB
>> [ebuild U ] sci-mathematics/sage-clib-5.9::sage-on-gentoo
>> [5.8::sage-on-gentoo] 0 kB
>> [ebuild U ] sci-mathematics/polybori-0.8.3::sage-on-gentoo
>> [0.8.2-r4::sage-on-gentoo] USE="gd -doc" 2,128 kB
>> [ebuild U ] dev-python/ipython-0.13.1-r1::sage-on-gentoo
>> [0.13.1::sage-on-gentoo] USE="qt4 smp -doc -emacs -examples
>> -matplotlib -mongodb -notebook -octave {-test} -wxwidgets"
>> PYTHON_TARGETS="python2_7%* python3_2%* -python2_6% -python3_1%" 0 kB
>> [ebuild U ] dev-python/pyzmq-13.1.0 [2.2.0.1-r1]
>> USE="-examples -green% {-test}" PYTHON_TARGETS="python2_7 python3_2
>> -python2_6 -python3_1 -python3_3" 820 kB
>> [ebuild U ] net-libs/zeromq-3.2.3 [3.2.2] USE="-pgm
>> -static-libs {-test}" 2,025 kB
>> [ebuild U ] dev-python/rpy-2.3.6 [2.3.4] USE="{-test}"
>> PYTHON_TARGETS="python2_7" 183 kB
>> [ebuild U ] dev-lang/R-3.0.1 [3.0.0] USE="X bash-completion
>> cairo jpeg nls openmp png readline -doc -icu -java -lapack -minimal
>> -perl (-prefix) -profile -static-libs -tiff -tk" 24,911 kB
>> [ebuild U ] sci-mathematics/pari-2.5.4::sage-on-gentoo
>> [2.5.3-r2::sage-on-gentoo] USE="X data gmp qt4 -doc -fltk" 2,659 kB
>> [nomerge ] sci-libs/scipy-0.12.0 [0.11.0-r1] USE="-doc
>> -sparse% {-test} (-umfpack%)" PYTHON_TARGETS="python2_7 python3_2%*
>> -python2_5 -python2_6 -python3_3%"
>> [ebuild U ] dev-python/imaging-1.1.7-r4 [1.1.7-r3] USE="jpeg
>> truetype zlib -doc -examples -lcms -scanner {-test} -tiff -tk"
>> PYTHON_TARGETS="python2_7 -python2_5 -python2_6" 0 kB
>> [nomerge ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk
>> gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk
>> -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6%
>> -python3_1% -python3_3%"
>> [ebuild NS ] dev-python/pygobject-3.4.2-r1:3 [2.28.6-r53:2]
>> USE="cairo threads -examples {-test}" PYTHON_TARGETS="python2_7
>> python3_2 -python2_6 -python3_1 -python3_3" 601 kB
>> [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo
>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>> PYTHON_TARGETS="python2_7"
>> [nomerge ]
>> sci-mathematics/sage-notebook-0.10.4-r2::sage-on-gentoo USE="-java
>> -server {-test}" PYTHON_TARGETS="python2_7"
>> [nomerge ]
>> dev-python/flask-autoindex-0.4.1-r1::sage-on-gentoo
>> PYTHON_TARGETS="python2_7"
>> [ebuild U ] dev-python/flask-0.9-r2 [0.9-r1] USE="-examples
>> {-test}" PYTHON_TARGETS="python2_7 -pypy1_9 -pypy2_0 -python2_5
>> -python2_6" 0 kB
>> [ebuild U ] dev-python/sqlalchemy-0.8.1 [0.8.0] USE="sqlite
>> -doc -examples {-test} (-firebird%) (-mssql%) (-mysql%)
>> (-postgres%)" PYTHON_TARGETS="python2_7 python3_2%* -pypy1_9%
>> -pypy2_0% -python2_5% -python2_6 -python3_3%" 3,688 kB
>> [ebuild UD ] dev-python/cython-0.19::sage-on-gentoo
>> [0.19.1::sage-on-gentoo] USE="-doc {-test}"
>> PYTHON_TARGETS="python2_7 python3_2 -python2_5 -python2_6 -python3_1
>> -python3_3" 1,350 kB
>> [nomerge ]
>> sci-mathematics/sage-notebook-0.10.4-r2::sage-on-gentoo USE="-java
>> -server {-test}" PYTHON_TARGETS="python2_7"
>> [nomerge ] dev-python/flask-babel-0.8 USE="-doc {-test}"
>> [nomerge ] dev-python/Babel-0.9.6-r1
>> PYTHON_TARGETS="python2_7 -pypy1_9 -pypy2_0 -python2_5 -python2_6"
>> [ebuild U ] dev-python/pytz-2013b [2012j]
>> PYTHON_TARGETS="python2_7 python3_2 -pypy1_9 -pypy2_0 -python2_5
>> -python2_6 -python3_1 -python3_3" 195 kB
>> [nomerge ] media-sound/vorbis-tools-1.4.0 USE="flac nls
>> ogg123 speex -kate"
>> [nomerge ] media-libs/libao-1.1.0-r1 USE="alsa mmap nas
>> -pulseaudio -static-libs"
>> [nomerge ] media-libs/nas-1.9.3 USE="-doc -static-libs"
>> [ebuild U ] x11-libs/libXres-1.0.7 [1.0.6] USE="-static-libs" 277 kB
>> [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo
>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>> PYTHON_TARGETS="python2_7"
>> [ebuild U ] sci-mathematics/singular-3.1.5-r1::sage-on-gentoo
>> [3.1.5::sage-on-gentoo] USE="python readline -boost -doc -emacs
>> -examples {-test}" PYTHON_SINGLE_TARGET="python2_7%* -python2_6%"
>> PYTHON_TARGETS="python2_7%* -python2_6%" 0 kB
>> [ebuild U ] sci-mathematics/gmp-ecm-6.4.4-r2::sage-on-gentoo
>> [6.4.4-r1::sage-on-gentoo] USE="custom-tune -blas -gwnum -openmp
>> -static-libs {-test}" 0 kB
>> [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo
>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>> PYTHON_TARGETS="python2_7"
>> [nomerge ] dev-python/sympy-0.7.2-r2::sage-on-gentoo
>> USE="latex opengl pdf png -doc -examples -gtk -imaging -ipython
>> -mathml -pyglet {-test} -texmacs" PYTHON_TARGETS="python2_7
>> -python2_6"
>> [nomerge ] dev-texlive/texlive-fontsextra-2012 USE="-doc -source"
>> [nomerge ] dev-texlive/texlive-basic-2012 USE="-doc -source"
>> [nomerge ] dev-texlive/texlive-documentation-base-2012
>> USE="-source"
>> [nomerge ] app-text/texlive-core-2012-r1 USE="X -cjk
>> -doc -source -tk -xetex"
>> [ebuild U ] x11-libs/libXp-1.0.2 [1.0.1-r1]
>> USE="-static-libs" ABI_X86="(64) -32 (-x32)" 292 kB
>> [nomerge ] dev-python/matplotlib-1.2.1 [1.1.1] USE="cairo gtk
>> gtk3%* latex -doc -examples -excel -fltk -qt4 {-test} -tk
>> -wxwidgets" PYTHON_TARGETS="python2_7%* python3_2%* -python2_6%
>> -python3_1% -python3_3%"
>> [ebuild N ] media-fonts/stix-fonts-1.0.0-r1 USE="X -doc" 2,697 kB
>> [nomerge ] sci-mathematics/sage-5.9::sage-on-gentoo
>> [5.8-r2::sage-on-gentoo] USE="latex -lrs% -nauty% -testsuite"
>> PYTHON_TARGETS="python2_7"
>> [nomerge ] dev-lang/R-3.0.1 [3.0.0] USE="X bash-completion
>> cairo jpeg nls openmp png readline -doc -icu -java -lapack -minimal
>> -perl (-prefix) -profile -static-libs -tiff -tk"
>> [ebuild U ] dev-libs/libpcre-8.33:3 [8.32:3] USE="bzip2 cxx
>> jit readline recursion-limit (unicode) zlib -libedit -pcre16
>> -pcre32% -static-libs" 1,408 kB
>> [ebuild U ] sci-mathematics/sage-extcode-5.9::sage-on-gentoo
>> [5.8::sage-on-gentoo] 12,026 kB
>> [ebuild U ]
>> sci-mathematics/sage-baselayout-5.9::sage-on-gentoo
>> [5.8-r1::sage-on-gentoo] USE="X -debug -testsuite -tools"
>> PYTHON_TARGETS="python2_7" 1,449 kB
>> [blocks B ] dev-lisp/gentoo-init ("dev-lisp/gentoo-init" is
>> blocking dev-lisp/asdf-3.0.1)
>>
>> Total: 30 packages (26 upgrades, 1 downgrade, 2 new, 1 in new slot,
>> 1 uninstall), Size of downloads: 238,793 kB
>> Conflict: 2 blocks (1 unsatisfied)
>>
>> * Error: The above package list contains packages which cannot be
>> * installed at the same time on the same system.
>>
>> (dev-lisp/gentoo-init-1.0::gentoo, ebuild scheduled for merge)
>> pulled in by
>> dev-lisp/gentoo-init required by
>> (dev-lisp/ecls-12.12.1::sage-on-gentoo, installed)
>>
>> (dev-lisp/asdf-3.0.1::gentoo, ebuild scheduled for merge) pulled in by
>> ~dev-lisp/asdf-3.0.1 required by (dev-lisp/uiop-3.0.1::gentoo,
>> ebuild scheduled for merge)
>> >=dev-lisp/asdf-2.0 required by
>> (dev-lisp/gentoo-init-1.0::gentoo, ebuild scheduled for merge)
>>
>>
>
> No cython there. I have just committed stuff for the lisp stuff. Martin Von
> Gagern just spent the last 12 hours solving the maxima issue that was
> preventing us to allow you to move to asdf-3.0.1. And I spent some time
> adjusting the overlay so the dependencies allow you to do it [nay, forces you
> to do it - I will need to add a few more keywords].
>
> can you sync the overlay and try again, please. And before merging you
> may want
> to unmerge ecm.
>
Just found I forgot to commit a patch. If you miss a patch, you'll have
to sync
again.
Francois
next prev parent reply other threads:[~2013-06-02 11:20 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2013-06-02 9:58 [gentoo-science] [sage-on-gentoo] dependencies conflict v_2e
2013-06-02 10:07 ` fbissey
[not found] ` <20130602131750.544f949a3b936bca0ee7043e@ukr.net>
2013-06-02 10:58 ` fbissey
2013-06-02 11:18 ` fbissey [this message]
2013-06-02 11:38 ` fbissey
2013-06-15 10:28 ` fbissey
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=20130602231835.8gs0k40oocwk4kwo@webmail.slingshot.co.nz \
--to=fbissey@slingshot.co.nz \
--cc=gentoo-science@lists.gentoo.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox