[gentoo-science] sage-5.6 build failure

[gentoo-science] sage-5.6 build failure

[Thomas Kahle]

[-- Attachment #1.1: Type: text/plain, Size: 237 bytes --]

Hi, 

I'm attaching a truncated build.log of sage-5.6 failing to build.  I'm
using atlas as my lapack, gmp-5.1, and I don't have the numpy17 USE flag
set yet.

Cheers,
Thomas


-- 
Thomas Kahle
http://dev.gentoo.org/~tomka/

[-- Attachment #1.2: build.log --]
[-- Type: text/plain, Size: 70544 bytes --]

^[[32;01m * ^[[39;49;00mPackage:    sci-mathematics/sage-5.6
^[[32;01m * ^[[39;49;00mRepository: sage-on-gentoo
^[[32;01m * ^[[39;49;00mMaintainer: sci@gentoo.org
^[[32;01m * ^[[39;49;00mUSE:        amd64 elibc_glibc kernel_linux latex python_targets_python2_7 testsuite userland_GNU
^[[32;01m * ^[[39;49;00mFEATURES:   ccache sandbox splitdebug
>>> Unpacking source...
>>> Unpacking sage-5.6.tar.bz2 to /var/tmp/portage/sci-mathematics/sage-5.6/work
>>> Source unpacked in /var/tmp/portage/sci-mathematics/sage-5.6/work
>>> Preparing source in /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 ...
 ^[[32;01m*^[[0m Applying sage-5.4-plural.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying sage-5.0-degree-sequence.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying sage-4.7.2-site-packages.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying trac12205.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying trac_13324.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying trac_13324.2.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying maxima-5.29.1-doctests.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying trac12985-unicode.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying sage-4.4.2-flint.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying remove-testjavapath-to-python.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying sage-5.4-package.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying sage-5.4-variables.patch.bz2 ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying sage-5.6-variables.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
 ^[[32;01m*^[[0m Applying sage-matroids.patch ...
^[[A^[[114C ^[[34;01m[ ^[[32;01mok^[[34;01m ]^[[0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 ...
 ^[[32;01m*^[[0m python2.7: running distutils-r1_run_phase distutils-r1_python_compile
/usr/bin/python2.7 setup.py build build --build-base /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7 --build-lib /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib --build-scripts /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/scripts
Building interpreters for fast_callable
Updating Cython code....
Building modified file sage/algebras/quatalg/quaternion_algebra_element.pyx.
Building modified file sage/algebras/letterplace/free_algebra_letterplace.pyx.
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Executing 331 commands (using 5 threads)
warning: sage/algebras/quatalg/quaternion_algebra_cython.pyx:91:14: local variable 'q' referenced before assignment
warning: sage/combinat/../ext/gmp.pxi:58:22: local variable 'p1' referenced before assignment
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warning: sage/combinat/expnums.pyx:90:21: local variable 'a' referenced before assignment
warning: sage/algebras/quatalg/../../ext/gmp.pxi:58:22: local variable 'p1' referenced before assignment
warning: sage/algebras/quatalg/../../ext/gmp.pxi:59:15: local variable 'p2' referenced before assignment
warning: sage/algebras/quatalg/../../ext/gmp.pxi:80:22: local variable 'p1' referenced before assignment
warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:14: local variable 'g' referenced before assignment
warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:27: local variable 's' referenced before assignment
warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:40: local variable 't' referenced before assignment
warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:54: local variable 'mn' referenced before assignment
warning: sage/algebras/quatalg/quaternion_algebra_element.pyx:985:20: local variable 'lcm' referenced before assignment
warning: sage/algebras/quatalg/quaternion_algebra_element.pyx:990:43: local variable 'lcm_rat' referenced before assignment
warning: sage/combinat/combinat_cython.pyx:66:18: local variable 't' referenced before assignment
warning: sage/combinat/combinat_cython.pyx:67:18: local variable 'u' referenced before assignment
warning: sage/combinat/combinat_cython.pyx:93:18: local variable 't' referenced before assignment
warning: sage/combinat/combinat_cython.pyx:94:18: local variable 'u' referenced before assignment
warning: sage/ext/../ext/gmp.pxi:58:22: local variable 'p1' referenced before assignment
warning: sage/ext/../ext/gmp.pxi:59:15: local variable 'p2' referenced before assignment
warning: sage/ext/../ext/gmp.pxi:80:22: local variable 'p1' referenced before assignment
warning: sage/ext/../ext/gmp.pxi:166:14: local variable 'g' referenced before assignment
warning: sage/ext/../ext/gmp.pxi:166:27: local variable 's' referenced before assignment
warning: sage/ext/../ext/gmp.pxi:166:40: local variable 't' referenced before assignment
warning: sage/ext/../ext/gmp.pxi:166:54: local variable 'mn' referenced before assignment
warning: sage/ext/multi_modular.pyx:373:23: local variable 'height' referenced before assignment
warning: sage/ext/multi_modular.pyx:455:18: local variable 'z' referenced before assignment
warning: sage/ext/multi_modular.pyx:568:18: local variable 'u' referenced before assignment
warning: sage/ext/multi_modular.pyx:613:18: local variable 'u' referenced before assignment
warning: sage/graphs/chrompoly.pyx:183:18: local variable 'coeff' referenced before assignment
warning: sage/graphs/chrompoly.pyx:184:21: local variable 'm' referenced before assignment
cython --gdb --cplus --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/algebras/letterplace/free_algebra_element_letterplace.cpp sage/algebras/letterplace/free_algebra_element_letterplace.pyx
sage/algebras/letterplace/free_algebra_element_letterplace.pyx --> build/sage/algebras/letterplace/free_algebra_element_letterplace.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/categories/action.c sage/categories/action.pyx
sage/categories/action.pyx --> build/sage/categories/action.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/categories/map.c sage/categories/map.pyx
sage/categories/map.pyx --> build/sage/categories/map.pyx
cython --gdb --cplus --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/combinat/matrices/dancing_links.cpp sage/combinat/matrices/dancing_links.pyx
sage/combinat/matrices/dancing_links.pyx --> build/sage/combinat/matrices/dancing_links.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/list_clone_timings_cy.c sage/structure/list_clone_timings_cy.pyx
sage/structure/list_clone_timings_cy.pyx --> build/sage/structure/list_clone_timings_cy.pyx
cython --gdb --cplus --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/combinat/words/word_datatypes.cpp sage/combinat/words/word_datatypes.pyx
sage/combinat/words/word_datatypes.pyx --> build/sage/combinat/words/word_datatypes.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/combinat/dict_addition.c sage/combinat/dict_addition.pyx
sage/combinat/dict_addition.pyx --> build/sage/combinat/dict_addition.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/combinat/combinat_cython.c sage/combinat/combinat_cython.pyx
sage/combinat/combinat_cython.pyx --> build/sage/combinat/combinat_cython.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/ext/fast_eval.c sage/ext/fast_eval.pyx
sage/ext/fast_eval.pyx --> build/sage/ext/fast_eval.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/finance/fractal.c sage/finance/fractal.pyx
sage/finance/fractal.pyx --> build/sage/finance/fractal.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/finance/time_series.c sage/finance/time_series.pyx
sage/finance/time_series.pyx --> build/sage/finance/time_series.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/graphs/graph_generators_pyx.c sage/graphs/graph_generators_pyx.pyx

[....]

sage/libs/pari/gen.c: In function ‘__pyx_pf_4sage_4libs_4pari_3gen_3gen_84__setitem__’:
sage/libs/pari/gen.c:8957:360: warning: return makes integer from pointer without a cast [enabled by default]
sage/libs/pari/gen.c:8977:54: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/pari/gen.c:8977:5: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/pari/gen.c:9028:54: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/pari/gen.c:9028:5: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/pari/gen.c: In function ‘__pyx_pf_4sage_4libs_4pari_3gen_12PariInstance___init__’:
sage/libs/pari/gen.c:46840:363: warning: return makes integer from pointer without a cast [enabled by default]
sage/libs/pari/gen.c:46927:19: warning: assignment from incompatible pointer type [enabled by default]
sage/libs/pari/gen.c: In function ‘__pyx_pf_4sage_4libs_4pari_3gen_12PariInstance_28__call__’:
sage/libs/pari/gen.c:49372:54: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/pari/gen.c:49372:5: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/pari/gen.c:49399:54: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/pari/gen.c:49399:5: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/pari/gen.c:49506:19: warning: assignment from incompatible pointer type [enabled by default]
sage/libs/pari/gen.c:49509:19: warning: assignment from incompatible pointer type [enabled by default]
sage/libs/pari/gen.c: In function ‘initgen’:
sage/libs/pari/gen.c:57971:361: warning: ‘return’ with a value, in function returning void [enabled by default]
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/pari/gen.o -L/usr//lib -L/usr/lib64 -lcsage -lpari -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/pari/gen.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/singular/polynomial.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/polynomial.o -D__STDC_LIMIT_MACROS -DNDEBUG
sage/libs/singular/singular.cpp: In function ‘snumber* __pyx_f_4sage_4libs_8singular_8singular_sa2si_ZZmod(__pyx_obj_4sage_5rings_12finite_rings_11integer_mod_IntegerMod_abstract*, ip_sring*)’:
sage/libs/singular/singular.cpp:5726:37: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/singular.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/singular/singular.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/singular/ring.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/ring.o -D__STDC_LIMIT_MACROS -DNDEBUG
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/polynomial.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/singular/polynomial.so
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/ring.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/singular/ring.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/singular/groebner_strategy.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/groebner_strategy.o -D__STDC_LIMIT_MACROS -DNDEBUG
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/groebner_strategy.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/singular/groebner_strategy.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/singular/function.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/function.o -D__STDC_LIMIT_MACROS -DNDEBUG
sage/libs/singular/function.cpp: In function ‘int __pyx_pf_4sage_4libs_8singular_8function_9Converter___init__(__pyx_obj_4sage_4libs_8singular_8function_Converter*, PyObject*, PyObject*, PyObject*)’:
sage/libs/singular/function.cpp:7080:127: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/function.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/singular/function.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/singular/option.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/option.o -D__STDC_LIMIT_MACROS -DNDEBUG
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/singular/option.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/singular/option.so
x86_64-pc-linux-gnu-gcc -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr/include/malloc/ -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/symmetrica/symmetrica.c -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/symmetrica/symmetrica.o
x86_64-pc-linux-gnu-gcc -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/mpmath/utils.c -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/utils.o
sage/libs/symmetrica/symmetrica.c: In function ‘__pyx_f_4sage_4libs_10symmetrica_10symmetrica__op’:
sage/libs/symmetrica/symmetrica.c:2838:52: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:2838:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c:2862:52: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:2862:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c:2886:52: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:2886:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c: In function ‘__pyx_f_4sage_4libs_10symmetrica_10symmetrica__op_schur_general’:
sage/libs/symmetrica/symmetrica.c:7449:52: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:7449:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c: In function ‘__pyx_f_4sage_4libs_10symmetrica_10symmetrica__op_schubert_general’:
sage/libs/symmetrica/symmetrica.c:7822:52: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:7822:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c: In function ‘__pyx_pf_4sage_4libs_10symmetrica_10symmetrica_6kostka_number_symmetrica’:
sage/libs/symmetrica/symmetrica.c:9287:56: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:9287:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c:9302:54: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:9302:5: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c:9362:56: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:9362:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c: In function ‘__pyx_pf_4sage_4libs_10symmetrica_10symmetrica_8kostka_tab_symmetrica’:
sage/libs/symmetrica/symmetrica.c:9585:56: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:9585:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c:9600:54: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:9600:5: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
sage/libs/symmetrica/symmetrica.c:9660:56: warning: comparison of distinct pointer types lacks a cast [enabled by default]
sage/libs/symmetrica/symmetrica.c:9660:3: warning: passing argument 2 of ‘PyType_IsSubtype’ from incompatible pointer type [enabled by default]
/usr/include/python2.7/object.h:437:5: note: expected ‘struct PyTypeObject *’ but argument is of type ‘struct PyObject *’
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/symmetrica/symmetrica.o -L/usr//lib -L/usr/lib64 -lcsage -lsymmetrica -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/symmetrica/symmetrica.so
x86_64-pc-linux-gnu-gcc -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/mpmath/ext_impl.c -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ext_impl.o
x86_64-pc-linux-gnu-gcc -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/mpmath/ext_main.c -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ext_main.o
sage/libs/mpmath/ext_impl.c: In function ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_normalize’:
sage/libs/mpmath/ext_impl.c:5715:7: warning: passing argument 1 of ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpz_tstbit_abs’ from incompatible pointer type [enabled by default]
sage/libs/mpmath/ext_impl.c:2530:12: note: expected ‘struct __mpz_struct *’ but argument is of type ‘struct __mpz_struct (*)[1]’
sage/libs/mpmath/ext_impl.c:5725:9: warning: passing argument 1 of ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpz_tstbit_abs’ from incompatible pointer type [enabled by default]
sage/libs/mpmath/ext_impl.c:2530:12: note: expected ‘struct __mpz_struct *’ but argument is of type ‘struct __mpz_struct (*)[1]’
sage/libs/mpmath/ext_impl.c:5729:11: warning: passing argument 1 of ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpz_tstbit_abs’ from incompatible pointer type [enabled by default]
sage/libs/mpmath/ext_impl.c:2530:12: note: expected ‘struct __mpz_struct *’ but argument is of type ‘struct __mpz_struct (*)[1]’
sage/libs/mpmath/ext_impl.c: In function ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl__add_perturbation’:
sage/libs/mpmath/ext_impl.c:7216:5: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c: In function ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_add’:
sage/libs/mpmath/ext_impl.c:7421:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c:7430:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c:7551:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c:7560:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c: In function ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_sub’:
sage/libs/mpmath/ext_impl.c:7850:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c:7859:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c:7980:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
sage/libs/mpmath/ext_impl.c:7989:9: warning: passing argument 1 of ‘__gmpz_sizeinbase’ from incompatible pointer type [enabled by default]
/usr/include/gmp.h:1051:9: note: expected ‘mpz_srcptr’ but argument is of type ‘struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_MPF *’
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ext_impl.o -L/usr//lib -L/usr/lib64 -lcsage -lmpfr -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/mpmath/ext_impl.so
sage/libs/mpmath/ext_main.c:2023:31: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpzi’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_main.c:2024:31: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpzl’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_main.c:2025:31: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_rndmode_to_python’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_main.c:2026:31: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_rndmode_from_python’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_main.c:2027:26: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_init’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_main.c:2028:26: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_clear’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_main.c:2029:26: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_set’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_main.c:2030:26: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_set_zero’ declared ‘inline’ [enabled by default]
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ext_main.o -L/usr//lib -L/usr/lib64 -lcsage -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/mpmath/ext_main.so
x86_64-pc-linux-gnu-gcc -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/mpmath/ext_libmp.c -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ext_libmp.o
sage/libs/mpmath/ext_libmp.c:1800:31: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_rndmode_from_python’ declared ‘inline’ [enabled by default]
sage/libs/mpmath/ext_libmp.c:1801:26: warning: variable ‘__pyx_f_4sage_4libs_6mpmath_8ext_impl_MPF_init’ declared ‘inline’ [enabled by default]
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ext_libmp.o -L/usr//lib -L/usr/lib64 -lcsage -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/mpmath/ext_libmp.so
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/utils.o -L/usr//lib -L/usr/lib64 -lcsage -lmpfr -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/mpmath/utils.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -DNTL_ALL -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/cremona/homspace.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/cremona/homspace.o
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -DNTL_ALL -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/cremona/mat.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/cremona/mat.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/cremona/homspace.o -L/usr//lib -L/usr/lib64 -lcsage -lec -lntl -lpari -lgmpxx -lgmp -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/cremona/homspace.so
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/cremona/mat.o -L/usr//lib -L/usr/lib64 -lcsage -lec -lntl -lpari -lgmpxx -lgmp -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/cremona/mat.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -DNTL_ALL -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/cremona/newforms.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/cremona/newforms.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/cremona/newforms.o -L/usr//lib -L/usr/lib64 -lcsage -lec -lntl -lpari -lgmpxx -lgmp -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/cremona/newforms.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_GF2.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_GF2E.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2E.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2E.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2E.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_GF2EContext.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2EContext.o
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_GF2EX.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2EX.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2EContext.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2EContext.so
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2EX.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2EX.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_GF2X.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2X.o
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_lzz_p.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_lzz_p.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2X.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2X.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_lzz_pContext.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_lzz_pContext.o
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_lzz_pX.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_lzz_pX.o
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_mat_GF2.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_mat_GF2.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_lzz_pContext.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_lzz_pContext.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_mat_GF2E.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_mat_GF2E.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_lzz_p.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_lzz_p.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_mat_ZZ.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_mat_ZZ.o
x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -march=native -O2 -pipe -fno-strict-aliasing /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_lzz_pX.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_lzz_pX.so
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_ZZ.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_ZZ.o
In file included from sage/libs/ppl.cpp:264:0:
/usr/include/ppl.hh:3687:7: error: redefinition of ‘class std::numeric_limits<__gmp_expr<__mpz_struct [1], __mpz_struct [1]> >’
/usr/include/gmpxx.h:3269:21: error: previous definition of ‘class std::numeric_limits<__gmp_expr<__mpz_struct [1], __mpz_struct [1]> >’
/usr/include/ppl.hh:3748:7: error: redefinition of ‘class std::numeric_limits<__gmp_expr<__mpq_struct [1], __mpq_struct [1]> >’
/usr/include/gmpxx.h:3306:21: error: previous definition of ‘class std::numeric_limits<__gmp_expr<__mpq_struct [1], __mpq_struct [1]> >’
error: command 'x86_64-pc-linux-gnu-g++' failed with exit status 1
x86_64-pc-linux-gnu-g++ -pthread -march=native -O2 -pipe -fno-strict-aliasing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/python2.7 -c sage/libs/ntl/ntl_ZZX.cpp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_ZZX.o
-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/rings/polynomial/multi_polynomial_libsingular.cpp sage/rings/polynomial/multi_polynomial_libsingular.pyx
sage/rings/polynomial/multi_polynomial_libsingular.pyx --> build/sage/rings/polynomial/multi_polynomial_libsingular.pyx
cython --gdb --cplus --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/rings/polynomial/polynomial_integer_dense_flint.cpp sage/rings/polynomial/polynomial_integer_dense_flint.pyx
sage/rings/polynomial/polynomial_integer_dense_flint.pyx --> build/sage/rings/polynomial/polynomial_integer_dense_flint.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/rings/polynomial/real_roots.c sage/rings/polynomial/real_roots.pyx
sage/rings/polynomial/real_roots.pyx --> build/sage/rings/polynomial/real_roots.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/stats/intlist.c sage/stats/intlist.pyx
sage/stats/intlist.pyx --> build/sage/stats/intlist.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/coerce_maps.c sage/structure/coerce_maps.pyx
sage/structure/coerce_maps.pyx --> build/sage/structure/coerce_maps.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/parent.c sage/structure/parent.pyx
sage/structure/parent.pyx --> build/sage/structure/parent.pyx
cython --gdb --cplus --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/symbolic/function.cpp sage/symbolic/function.pyx
sage/symbolic/function.pyx --> build/sage/symbolic/function.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/tests/cython.c sage/tests/cython.pyx
sage/tests/cython.pyx --> build/sage/tests/cython.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/libs/lrcalc/lrcalc.c sage/libs/lrcalc/lrcalc.pyx
sage/libs/lrcalc/lrcalc.pyx --> build/sage/libs/lrcalc/lrcalc.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/ext/interpreters/wrapper_py.c sage/ext/interpreters/wrapper_py.pyx
sage/ext/interpreters/wrapper_py.pyx --> build/sage/ext/interpreters/wrapper_py.pyx
5.6/work/sage-5.6 -o sage/structure/category_object.c sage/structure/category_object.pyx
sage/structure/category_object.pyx --> build/sage/structure/category_object.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/coerce_actions.c sage/structure/coerce_actions.pyx
sage/structure/coerce_actions.pyx --> build/sage/structure/coerce_actions.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/factory.c sage/structure/factory.pyx
sage/structure/factory.pyx --> build/sage/structure/factory.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/generators.c sage/structure/generators.pyx
sage/structure/generators.pyx --> build/sage/structure/generators.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/parent_base.c sage/structure/parent_base.pyx
sage/structure/parent_base.pyx --> build/sage/structure/parent_base.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/structure/sage_object.c sage/structure/sage_object.pyx
sage/structure/sage_object.pyx --> build/sage/structure/sage_object.pyx
cython --gdb --cplus --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/symbolic/expression.cpp sage/symbolic/expression.pyx
sage/symbolic/expression.pyx --> build/sage/symbolic/expression.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/sat/solvers/satsolver.c sage/sat/solvers/satsolver.pyx
sage/sat/solvers/satsolver.pyx --> build/sage/sat/solvers/satsolver.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/ext/interpreters/wrapper_rdf.c sage/ext/interpreters/wrapper_rdf.pyx
sage/ext/interpreters/wrapper_rdf.pyx --> build/sage/ext/interpreters/wrapper_rdf.pyx
bolic/ring.pyx --> build/sage/symbolic/ring.pyx
cython --gdb  --old-style-globals --embed-positions --directive cdivision=True,autotestdict=False,fast_getattr=True -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/ext/interpreters/wrapper_rr.c sage/ext/interpreters/wrapper_rr.pyx
sage/ext/interpreters/wrapper_rr.pyx --> build/sage/ext/interpreters/wrapper_rr.pyx
 ^[[31;01m*^[[0m ERROR: sci-mathematics/sage-5.6 failed (compile phase):
 ^[[31;01m*^[[0m   (no error message)
 ^[[31;01m*^[[0m 
 ^[[31;01m*^[[0m Call stack:
 ^[[31;01m*^[[0m     ebuild.sh, line   93:  Called src_compile
 ^[[31;01m*^[[0m   environment, line 3709:  Called distutils-r1_src_compile
 ^[[31;01m*^[[0m   environment, line 1198:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 ^[[31;01m*^[[0m   environment, line  434:  Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 ^[[31;01m*^[[0m   environment, line 3395:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 ^[[31;01m*^[[0m   environment, line 1181:  Called distutils-r1_python_compile
 ^[[31;01m*^[[0m   environment, line 1093:  Called esetup.py 'build'
 ^[[31;01m*^[[0m   environment, line 1926:  Called die
 ^[[31;01m*^[[0m The specific snippet of code:
 ^[[31;01m*^[[0m       "${@}" || die
 ^[[31;01m*^[[0m 
 ^[[31;01m*^[[0m If you need support, post the output of `emerge --info '=sci-mathematics/sage-5.6'`,
 ^[[31;01m*^[[0m the complete build log and the output of `emerge -pqv '=sci-mathematics/sage-5.6'`.
 ^[[31;01m*^[[0m This ebuild is from an overlay named 'sage-on-gentoo': '/var/lib/layman/sage-on-gentoo/'
 ^[[31;01m*^[[0m The complete build log is located at '/var/tmp/portage/sci-mathematics/sage-5.6/temp/build.log'.
 ^[[31;01m*^[[0m The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/sage-5.6/temp/environment'.
 ^[[31;01m*^[[0m Working directory: '/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6'
 ^[[31;01m*^[[0m S: '/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6'

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Re: [gentoo-science] sage-5.6 build failure

[Christopher Schwan]

On Tuesday 29 January 2013 11:25:56 Thomas Kahle wrote:
> Hi,
> 
> I'm attaching a truncated build.log of sage-5.6 failing to build.  I'm
> using atlas as my lapack, gmp-5.1, and I don't have the numpy17 USE flag
> set yet.
> 
> Cheers,
> Thomas

Thats bug #447928.

Cheers,
Christopher

[1] https://bugs.gentoo.org/show_bug.cgi?id=447928

Re: [gentoo-science] sage-5.6 build failure

[Thomas Kahle]

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On 11:53 Tue 29 Jan 2013, Christopher Schwan wrote:
> On Tuesday 29 January 2013 11:25:56 Thomas Kahle wrote:
> > Hi,
> > 
> > I'm attaching a truncated build.log of sage-5.6 failing to build.  I'm
> > using atlas as my lapack, gmp-5.1, and I don't have the numpy17 USE flag
> > set yet.
> > 
> > Cheers,
> > Thomas
> 
> Thats bug #447928.

Great.  Thanks.  One of these things that happens if you mix a stable
tree with some super-up-to-date packages like gmp-5.1.

Cheers,
Thomas


-- 
Thomas Kahle
http://dev.gentoo.org/~tomka/

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