From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from lists.gentoo.org (pigeon.gentoo.org [208.92.234.80]) by finch.gentoo.org (Postfix) with ESMTP id 76D1F138735 for ; Tue, 29 Jan 2013 10:30:11 +0000 (UTC) Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 7995621C015; Tue, 29 Jan 2013 10:30:09 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by pigeon.gentoo.org (Postfix) with ESMTPS id B583421C00E for ; Tue, 29 Jan 2013 10:30:08 +0000 (UTC) Received: from localhost (unknown [131.159.198.56]) (using TLSv1 with cipher DHE-RSA-AES128-SHA (128/128 bits)) (No client certificate requested) (Authenticated sender: tomka) by smtp.gentoo.org (Postfix) with ESMTPSA id 7B2FA33DBAB for ; Tue, 29 Jan 2013 10:30:06 +0000 (UTC) Date: Tue, 29 Jan 2013 11:25:56 +0100 From: Thomas Kahle To: Gentoo Science Subject: [gentoo-science] sage-5.6 build failure Message-ID: <20130129102556.GA32762@schlaumatte.informatik.tu-muenchen.de> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="LyciRD1jyfeSSjG0" Content-Disposition: inline X-Arbitrary-Number-Of-The-Day: 42 User-Agent: Mutt/1.5.21 (2010-09-15) X-Archives-Salt: 0c2b0901-f335-4e4f-b544-39e8d572147e X-Archives-Hash: bcbd9287c4be0d0327b95674b67b6647 --LyciRD1jyfeSSjG0 Content-Type: multipart/mixed; boundary="VS++wcV0S1rZb1Fb" Content-Disposition: inline --VS++wcV0S1rZb1Fb Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Hi,=20 I'm attaching a truncated build.log of sage-5.6 failing to build. I'm using atlas as my lapack, gmp-5.1, and I don't have the numpy17 USE flag set yet. Cheers, Thomas --=20 Thomas Kahle http://dev.gentoo.org/~tomka/ --VS++wcV0S1rZb1Fb Content-Type: text/plain; charset=utf-8 Content-Disposition: attachment; filename="build.log" Content-Transfer-Encoding: quoted-printable =1B[32;01m * =1B[39;49;00mPackage: sci-mathematics/sage-5.6 =1B[32;01m * =1B[39;49;00mRepository: sage-on-gentoo =1B[32;01m * =1B[39;49;00mMaintainer: sci@gentoo.org =1B[32;01m * =1B[39;49;00mUSE: amd64 elibc_glibc kernel_linux latex = python_targets_python2_7 testsuite userland_GNU =1B[32;01m * =1B[39;49;00mFEATURES: ccache sandbox splitdebug >>> Unpacking source... >>> Unpacking sage-5.6.tar.bz2 to /var/tmp/portage/sci-mathematics/sage-5.6= /work >>> Source unpacked in /var/tmp/portage/sci-mathematics/sage-5.6/work >>> Preparing source in /var/tmp/portage/sci-mathematics/sage-5.6/work/sage= -5.6 ... =1B[32;01m*=1B[0m Applying sage-5.4-plural.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying sage-5.0-degree-sequence.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying sage-4.7.2-site-packages.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying trac12205.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying trac_13324.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying trac_13324.2.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying maxima-5.29.1-doctests.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying trac12985-unicode.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying sage-4.4.2-flint.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying remove-testjavapath-to-python.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying sage-5.4-package.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying sage-5.4-variables.patch.bz2 ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying sage-5.6-variables.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m =1B[32;01m*=1B[0m Applying sage-matroids.patch ... =1B[A=1B[114C =1B[34;01m[ =1B[32;01mok=1B[34;01m ]=1B[0m >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-mathematics/sage-5.6/work/sa= ge-5.6 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-mathematics/sage-5.6/work/sage= -5.6 ... =1B[32;01m*=1B[0m python2.7: running distutils-r1_run_phase distutils-r1_p= ython_compile /usr/bin/python2.7 setup.py build build --build-base /var/tmp/portage/sci-m= athematics/sage-5.6/work/sage-5.6-python2_7 --build-lib /var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6-python2_7/lib --build-scripts /var/tmp= /portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/scripts Building interpreters for fast_callable Updating Cython code.... Building modified file sage/algebras/quatalg/quaternion_algebra_element.pyx. Building modified file sage/algebras/letterplace/free_algebra_letterplace.p= yx. Building modified file sage/algebras/letterplace/free_algebra_element_lette= rplace.pyx. Building modified file sage/algebras/letterplace/letterplace_ideal.pyx. Building modified file sage/algebras/quatalg/quaternion_algebra_cython.pyx. Building modified file sage/calculus/var.pyx. Building modified file sage/calculus/riemann.pyx. Building modified file sage/calculus/interpolators.pyx. Building modified file sage/categories/action.pyx. Building modified file sage/categories/category_singleton.pyx. Building modified file sage/categories/functor.pyx. Building modified file sage/categories/map.pyx. Building modified file sage/categories/morphism.pyx. Building modified file sage/categories/examples/semigroups_cython.pyx. Building modified file sage/coding/binary_code.pyx. Building modified file sage/combinat/expnums.pyx. Building modified file sage/combinat/matrices/dancing_links.pyx. Building modified file sage/structure/list_clone.pyx. Building modified file sage/structure/list_clone_timings_cy.pyx. Building modified file sage/sets/finite_set_map_cy.pyx. Building modified file sage/combinat/partitions.pyx. Building modified file sage/combinat/words/word_datatypes.pyx. Building modified file sage/combinat/permutation_cython.pyx. Building modified file sage/combinat/dict_addition.pyx. Building modified file sage/combinat/debruijn_sequence.pyx. Building modified file sage/combinat/degree_sequences.pyx. Building modified file sage/combinat/combinat_cython.pyx. Building modified file sage/combinat/enumeration_mod_permgroup.pyx. Building modified file sage/crypto/boolean_function.pyx. Building modified file sage/ext/c_lib.pyx. Building modified file sage/ext/fast_callable.pyx. Building modified file sage/ext/fast_eval.pyx. Building modified file sage/ext/interactive_constructors_c.pyx. Building modified file sage/ext/multi_modular.pyx. Building modified file sage/finance/fractal.pyx. Building modified file sage/finance/markov_multifractal_cython.pyx. Building modified file sage/finance/time_series.pyx. Building modified file sage/functions/prime_pi.pyx. Building modified file sage/games/sudoku_backtrack.pyx. Building modified file sage/geometry/point_collection.pyx. Building modified file sage/geometry/toric_lattice_element.pyx. Building modified file sage/geometry/integral_points.pyx. Building modified file sage/geometry/triangulation/base.pyx. Building modified file sage/graphs/chrompoly.pyx. Building modified file sage/graphs/cliquer.pyx. Building sage/graphs/graph_decompositions/vertex_separation.pyx because it = depends on sage/graphs/graph_decompositions/fast_digraph.pyx. Building modified file sage/graphs/graph_decompositions/graph_products.pyx. Building modified file sage/graphs/convexity_properties.pyx. Building modified file sage/graphs/comparability.pyx. Building modified file sage/graphs/generic_graph_pyx.pyx. Building modified file sage/graphs/graph_generators_pyx.pyx. Building modified file sage/graphs/distances_all_pairs.pyx. Building modified file sage/graphs/base/static_sparse_graph.pyx. Building modified file sage/graphs/modular_decomposition/modular_decomposit= ion.pyx. Building modified file sage/graphs/weakly_chordal.pyx. Building modified file sage/graphs/matchpoly.pyx. Building modified file sage/graphs/planarity.pyx. Building modified file sage/graphs/graph_decompositions/rankwidth.pyx. Building modified file sage/graphs/spanning_tree.pyx. Building modified file sage/graphs/trees.pyx. Building modified file sage/graphs/genus.pyx. Building modified file sage/graphs/hyperbolicity.pyx. Building modified file sage/graphs/base/c_graph.pyx. Building modified file sage/graphs/base/sparse_graph.pyx. Building modified file sage/graphs/base/dense_graph.pyx. Building modified file sage/groups/group.pyx. Building modified file sage/groups/perm_gps/permgroup_element.pyx. Building modified file sage/groups/perm_gps/partn_ref/automorphism_group_ca= nonical_label.pyx. Building modified file sage/groups/perm_gps/partn_ref/double_coset.pyx. Building modified file sage/groups/perm_gps/partn_ref/refinement_binary.pyx. Building modified file sage/groups/perm_gps/partn_ref/refinement_graphs.pyx. Building modified file sage/groups/perm_gps/partn_ref/refinement_lists.pyx. Building modified file sage/groups/perm_gps/partn_ref/refinement_matrices.p= yx. Building modified file sage/groups/perm_gps/partn_ref/refinement_python.pyx. Building modified file sage/gsl/callback.pyx. Building modified file sage/gsl/dwt.pyx. Building modified file sage/gsl/fft.pyx. Building modified file sage/gsl/gsl_array.pyx. Building modified file sage/gsl/integration.pyx. Building modified file sage/gsl/interpolation.pyx. Building modified file sage/gsl/ode.pyx. Building modified file sage/gsl/probability_distribution.pyx. Building modified file sage/interacts/library_cython.pyx. Building modified file sage/libs/ecl.pyx. Building modified file sage/libs/flint/flint.pyx. Building modified file sage/libs/flint/fmpz_poly.pyx. Building modified file sage/libs/fplll/fplll.pyx. Building modified file sage/libs/linbox/linbox.pyx. Building modified file sage/libs/lcalc/lcalc_Lfunction.pyx. Building modified file sage/libs/libecm.pyx. Building modified file sage/libs/mwrank/mwrank.pyx. Building modified file sage/libs/pari/gen.pyx. Building modified file sage/libs/ppl.pyx. Building modified file sage/libs/ratpoints.pyx. Building modified file sage/libs/singular/singular.pyx. Building modified file sage/libs/singular/polynomial.pyx. Building modified file sage/libs/singular/ring.pyx. Building modified file sage/libs/singular/groebner_strategy.pyx. Building modified file sage/libs/singular/function.pyx. Building modified file sage/libs/singular/option.pyx. Building modified file sage/libs/symmetrica/symmetrica.pyx. Building modified file sage/libs/mpmath/utils.pyx. Building modified file sage/libs/mpmath/ext_impl.pyx. Building modified file sage/libs/mpmath/ext_main.pyx. Building modified file sage/libs/mpmath/ext_libmp.pyx. Building modified file sage/libs/cremona/homspace.pyx. Building modified file sage/libs/cremona/mat.pyx. Building modified file sage/libs/cremona/newforms.pyx. Building modified file sage/libs/ntl/ntl_GF2.pyx. Building modified file sage/libs/ntl/ntl_GF2E.pyx. Building modified file sage/libs/ntl/ntl_GF2EContext.pyx. Building modified file sage/libs/ntl/ntl_GF2EX.pyx. Building modified file sage/libs/ntl/ntl_GF2X.pyx. Building modified file sage/libs/ntl/ntl_lzz_p.pyx. Building modified file sage/libs/ntl/ntl_lzz_pContext.pyx. Building modified file sage/libs/ntl/ntl_lzz_pX.pyx. Building modified file sage/libs/ntl/ntl_mat_GF2.pyx. Building modified file sage/libs/ntl/ntl_mat_GF2E.pyx. Building modified file sage/libs/ntl/ntl_mat_ZZ.pyx. Building modified file sage/libs/ntl/ntl_ZZ.pyx. Building modified file sage/libs/ntl/ntl_ZZX.pyx. Building modified file sage/libs/ntl/ntl_ZZ_p.pyx. Building modified file sage/libs/ntl/ntl_ZZ_pContext.pyx. Building modified file sage/libs/ntl/ntl_ZZ_pE.pyx. Building modified file sage/libs/ntl/ntl_ZZ_pEContext.pyx. Building modified file sage/libs/ntl/ntl_ZZ_pEX.pyx. Building modified file sage/libs/ntl/ntl_ZZ_pX.pyx. Building modified file sage/matrix/action.pyx. Building modified file sage/matrix/change_ring.pyx. Building modified file sage/matrix/matrix.pyx. Building modified file sage/matrix/matrix0.pyx. Building modified file sage/matrix/matrix1.pyx. Building modified file sage/matrix/matrix2.pyx. Building modified file sage/matrix/matrix_complex_double_dense.pyx. Building modified file sage/matrix/matrix_cyclo_dense.pyx. Building modified file sage/matrix/matrix_dense.pyx. Building modified file sage/matrix/matrix_double_dense.pyx. Building modified file sage/matrix/matrix_generic_dense.pyx. Building modified file sage/matrix/matrix_generic_sparse.pyx. Building modified file sage/matrix/matrix_integer_2x2.pyx. Building modified file sage/matrix/matrix_integer_dense.pyx. Building modified file sage/matrix/matrix_integer_sparse.pyx. Building modified file sage/matrix/matrix_mod2_dense.pyx. Building modified file sage/matrix/matrix_mod2e_dense.pyx. Building modified file sage/matrix/matrix_modn_dense.pyx. Building modified file sage/matrix/matrix_modn_dense_float.pyx. Building modified file sage/matrix/matrix_modn_dense_double.pyx. Building modified file sage/matrix/matrix_modn_sparse.pyx. Building modified file sage/matrix/matrix_mpolynomial_dense.pyx. Building modified file sage/matrix/matrix_rational_dense.pyx. Building modified file sage/matrix/matrix_rational_sparse.pyx. Building modified file sage/matrix/matrix_real_double_dense.pyx. Building modified file sage/matrix/matrix_sparse.pyx. Building modified file sage/matrix/matrix_symbolic_dense.pyx. Building modified file sage/matrix/matrix_window.pyx. Building modified file sage/matrix/matrix_window_modn_dense.pyx. Building modified file sage/matrix/misc.pyx. Building modified file sage/matrix/strassen.pyx. Building modified file sage/media/channels.pyx. Building modified file sage/misc/allocator.pyx. Building modified file sage/misc/bitset.pyx. Building modified file sage/misc/cachefunc.pyx. Building modified file sage/misc/citation.pyx. Building modified file sage/misc/constant_function.pyx. Building modified file sage/misc/cython_c.pyx. Building modified file sage/misc/c3.pyx. Building modified file sage/misc/derivative.pyx. Building modified file sage/misc/fpickle.pyx. Building modified file sage/misc/function_mangling.pyx. Building modified file sage/misc/lazy_import.pyx. Building modified file sage/misc/lazy_list.pyx. Building modified file sage/misc/misc_c.pyx. Building modified file sage/misc/nested_class.pyx. Building modified file sage/misc/parser.pyx. Building modified file sage/misc/pickle_old.pyx. Building modified file sage/misc/randstate.pyx. Building modified file sage/misc/readline_extra_commands.pyx. Building modified file sage/misc/refcount.pyx. Building modified file sage/misc/reset.pyx. Building modified file sage/misc/sage_timeit_class.pyx. Building modified file sage/misc/classcall_metaclass.pyx. Building modified file sage/misc/binary_tree.pyx. Building modified file sage/misc/search.pyx. Building modified file sage/misc/session.pyx. Building modified file sage/misc/stopgap.pyx. Building modified file sage/modular/arithgroup/congroup_pyx.pyx. Building modified file sage/modular/arithgroup/farey_symbol.pyx. Building modified file sage/modular/modform/eis_series_cython.pyx. Building modified file sage/modular/modsym/apply.pyx. Building modified file sage/modular/modsym/relation_matrix_pyx.pyx. Building modified file sage/modular/modsym/heilbronn.pyx. Building modified file sage/modular/modsym/p1list.pyx. Building modified file sage/modules/finite_submodule_iter.pyx. Building modified file sage/modules/free_module_element.pyx. Building modified file sage/modules/module.pyx. Building modified file sage/modules/vector_complex_double_dense.pyx. Building modified file sage/modules/vector_double_dense.pyx. Building modified file sage/modules/vector_integer_dense.pyx. Building modified file sage/modules/vector_modn_dense.pyx. Building modified file sage/modules/vector_mod2_dense.pyx. Building modified file sage/modules/vector_rational_dense.pyx. Building modified file sage/modules/vector_real_double_dense.pyx. Building modified file sage/numerical/mip.pyx. Building modified file sage/numerical/linear_functions.pyx. Building modified file sage/numerical/backends/generic_backend.pyx. Building modified file sage/numerical/backends/glpk_backend.pyx. Building modified file sage/numerical/backends/ppl_backend.pyx. Building modified file sage/plot/complex_plot.pyx. Building modified file sage/plot/plot3d/base.pyx. Building modified file sage/plot/plot3d/implicit_surface.pyx. Building modified file sage/plot/plot3d/index_face_set.pyx. Building modified file sage/plot/plot3d/parametric_surface.pyx. Building modified file sage/plot/plot3d/shapes.pyx. Building modified file sage/plot/plot3d/transform.pyx. Building modified file sage/quadratic_forms/count_local_2.pyx. Building modified file sage/quadratic_forms/quadratic_form__evaluate.pyx. Building modified file sage/rings/bernmm.pyx. Building modified file sage/rings/bernoulli_mod_p.pyx. Building modified file sage/rings/complex_double.pyx. Building modified file sage/rings/complex_interval.pyx. Building modified file sage/rings/complex_number.pyx. Building modified file sage/rings/integer.pyx. Building modified file sage/rings/integer_ring.pyx. Building modified file sage/rings/factorint.pyx. Building modified file sage/rings/fast_arith.pyx. Building modified file sage/rings/fraction_field_element.pyx. Building modified file sage/rings/fraction_field_FpT.pyx. Building modified file sage/rings/laurent_series_ring_element.pyx. Building modified file sage/rings/morphism.pyx. Building modified file sage/rings/complex_mpc.pyx. Building modified file sage/rings/noncommutative_ideals.pyx. Building modified file sage/rings/power_series_mpoly.pyx. Building modified file sage/rings/power_series_poly.pyx. Building modified file sage/rings/power_series_ring_element.pyx. Building modified file sage/rings/rational.pyx. Building modified file sage/rings/real_double.pyx. Building modified file sage/rings/real_interval_absolute.pyx. Building modified file sage/rings/real_lazy.pyx. Building modified file sage/rings/real_mpfi.pyx. Building modified file sage/rings/real_mpfr.pyx. Building modified file sage/rings/residue_field.pyx. Building modified file sage/rings/ring.pyx. Building modified file sage/rings/finite_rings/finite_field_base.pyx. Building modified file sage/rings/finite_rings/element_base.pyx. Building modified file sage/rings/finite_rings/integer_mod.pyx. Building modified file sage/rings/finite_rings/element_givaro.pyx. Building modified file sage/rings/finite_rings/element_ntl_gf2e.pyx. Building modified file sage/rings/function_field/function_field_element.pyx. Building modified file sage/rings/number_field/number_field_base.pyx. Building modified file sage/rings/number_field/number_field_element.pyx. Building modified file sage/rings/number_field/number_field_element_quadrat= ic.pyx. Building modified file sage/rings/number_field/number_field_morphisms.pyx. Building modified file sage/rings/number_field/totallyreal.pyx. Building modified file sage/rings/number_field/totallyreal_data.pyx. Building modified file sage/rings/padics/local_generic_element.pyx. Building modified file sage/rings/padics/padic_base_coercion.pyx. Building modified file sage/rings/padics/padic_base_generic_element.pyx. Building modified file sage/rings/padics/padic_capped_absolute_element.pyx. Building modified file sage/rings/padics/padic_capped_relative_element.pyx. Building modified file sage/rings/padics/padic_ext_element.pyx. Building modified file sage/rings/padics/padic_fixed_mod_element.pyx. Building modified file sage/rings/padics/padic_generic_element.pyx. Building modified file sage/rings/padics/padic_printing.pyx. Building modified file sage/rings/padics/padic_ZZ_pX_CA_element.pyx. Building modified file sage/rings/padics/padic_ZZ_pX_CR_element.pyx. Building modified file sage/rings/padics/padic_ZZ_pX_element.pyx. Building modified file sage/rings/padics/padic_ZZ_pX_FM_element.pyx. Building modified file sage/rings/padics/pow_computer.pyx. Building modified file sage/rings/padics/pow_computer_ext.pyx. Building modified file sage/rings/polynomial/cyclotomic.pyx. Building modified file sage/rings/polynomial/laurent_polynomial.pyx. Building modified file sage/rings/polynomial/multi_polynomial.pyx. Building modified file sage/rings/polynomial/multi_polynomial_ideal_libsing= ular.pyx. Building modified file sage/rings/polynomial/plural.pyx. Building modified file sage/rings/polynomial/multi_polynomial_libsingular.p= yx. Building modified file sage/rings/polynomial/multi_polynomial_ring_generic.= pyx. Building modified file sage/rings/polynomial/polydict.pyx. Building modified file sage/rings/polynomial/polynomial_compiled.pyx. Building modified file sage/rings/polynomial/polynomial_element.pyx. Building modified file sage/rings/polynomial/polynomial_gf2x.pyx. Building modified file sage/rings/polynomial/polynomial_zz_pex.pyx. Building modified file sage/rings/polynomial/polynomial_zmod_flint.pyx. Building modified file sage/rings/polynomial/polynomial_integer_dense_flint= =2Epyx. Building modified file sage/rings/polynomial/polynomial_integer_dense_ntl.p= yx. Building modified file sage/rings/polynomial/polynomial_rational_flint.pyx. Building modified file sage/rings/polynomial/polynomial_modn_dense_ntl.pyx. Building modified file sage/rings/polynomial/pbori.pyx. Building modified file sage/rings/polynomial/polynomial_real_mpfr_dense.pyx. Building modified file sage/rings/polynomial/real_roots.pyx. Building modified file sage/rings/polynomial/symmetric_reduction.pyx. Building modified file sage/schemes/elliptic_curves/descent_two_isogeny.pyx. Building modified file sage/schemes/hyperelliptic_curves/hypellfrob.pyx. Building modified file sage/schemes/toric/divisor_class.pyx. Building modified file sage/sets/disjoint_set.pyx. Building modified file sage/stats/hmm/util.pyx. Building modified file sage/stats/hmm/distributions.pyx. Building modified file sage/stats/hmm/hmm.pyx. Building modified file sage/stats/hmm/chmm.pyx. Building modified file sage/stats/intlist.pyx. Building modified file sage/structure/category_object.pyx. Building modified file sage/structure/coerce.pyx. Building modified file sage/structure/coerce_actions.pyx. Building modified file sage/structure/coerce_dict.pyx. Building modified file sage/structure/coerce_maps.pyx. Building modified file sage/structure/element.pyx. Building modified file sage/structure/factory.pyx. Building modified file sage/structure/generators.pyx. Building modified file sage/structure/mutability.pyx. Building modified file sage/structure/misc.pyx. Building modified file sage/structure/parent.pyx. Building modified file sage/structure/parent_base.pyx. Building modified file sage/structure/parent_gens.pyx. Building modified file sage/structure/parent_old.pyx. Building modified file sage/structure/sage_object.pyx. Building modified file sage/structure/wrapper_parent.pyx. Building modified file sage/symbolic/constants_c.pyx. Building modified file sage/symbolic/expression.pyx. Building modified file sage/symbolic/getitem.pyx. Building modified file sage/symbolic/function.pyx. Building modified file sage/symbolic/pynac.pyx. Building modified file sage/symbolic/ring.pyx. Building modified file sage/tests/interrupt.pyx. Building modified file sage/tests/stl_vector.pyx. Building modified file sage/tests/cython.pyx. Building modified file sage/sat/solvers/satsolver.pyx. Building modified file sage/libs/lrcalc/lrcalc.pyx. Building modified file sage/ext/interpreters/wrapper_rdf.pyx. Building modified file sage/ext/interpreters/wrapper_cdf.pyx. Building modified file sage/ext/interpreters/wrapper_rr.pyx. Building modified file sage/ext/interpreters/wrapper_py.pyx. Building modified file sage/ext/interpreters/wrapper_el.pyx. Executing 331 commands (using 5 threads) warning: sage/algebras/quatalg/quaternion_algebra_cython.pyx:91:14: local v= ariable 'q' referenced before assignment warning: sage/combinat/../ext/gmp.pxi:58:22: local variable 'p1' referenced= before assignment warning: sage/combinat/../ext/gmp.pxi:59:15: local variable 'p2' referenced= before assignment warning: sage/combinat/../ext/gmp.pxi:80:22: local variable 'p1' referenced= before assignment warning: sage/combinat/../ext/gmp.pxi:166:14: local variable 'g' referenced= before assignment warning: sage/combinat/../ext/gmp.pxi:166:27: local variable 's' referenced= before assignment warning: sage/combinat/../ext/gmp.pxi:166:40: local variable 't' referenced= before assignment warning: sage/combinat/../ext/gmp.pxi:166:54: local variable 'mn' reference= d before assignment warning: sage/combinat/expnums.pyx:90:21: local variable 'a' referenced bef= ore assignment warning: sage/algebras/quatalg/../../ext/gmp.pxi:58:22: local variable 'p1'= referenced before assignment warning: sage/algebras/quatalg/../../ext/gmp.pxi:59:15: local variable 'p2'= referenced before assignment warning: sage/algebras/quatalg/../../ext/gmp.pxi:80:22: local variable 'p1'= referenced before assignment warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:14: local variable 'g'= referenced before assignment warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:27: local variable 's'= referenced before assignment warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:40: local variable 't'= referenced before assignment warning: sage/algebras/quatalg/../../ext/gmp.pxi:166:54: local variable 'mn= ' referenced before assignment warning: sage/algebras/quatalg/quaternion_algebra_element.pyx:985:20: local= variable 'lcm' referenced before assignment warning: sage/algebras/quatalg/quaternion_algebra_element.pyx:990:43: local= variable 'lcm_rat' referenced before assignment warning: sage/combinat/combinat_cython.pyx:66:18: local variable 't' refere= nced before assignment warning: sage/combinat/combinat_cython.pyx:67:18: local variable 'u' refere= nced before assignment warning: sage/combinat/combinat_cython.pyx:93:18: local variable 't' refere= nced before assignment warning: sage/combinat/combinat_cython.pyx:94:18: local variable 'u' refere= nced before assignment warning: sage/ext/../ext/gmp.pxi:58:22: local variable 'p1' referenced befo= re assignment warning: sage/ext/../ext/gmp.pxi:59:15: local variable 'p2' referenced befo= re assignment warning: sage/ext/../ext/gmp.pxi:80:22: local variable 'p1' referenced befo= re assignment warning: sage/ext/../ext/gmp.pxi:166:14: local variable 'g' referenced befo= re assignment warning: sage/ext/../ext/gmp.pxi:166:27: local variable 's' referenced befo= re assignment warning: sage/ext/../ext/gmp.pxi:166:40: local variable 't' referenced befo= re assignment warning: sage/ext/../ext/gmp.pxi:166:54: local variable 'mn' referenced bef= ore assignment warning: sage/ext/multi_modular.pyx:373:23: local variable 'height' referen= ced before assignment warning: sage/ext/multi_modular.pyx:455:18: local variable 'z' referenced b= efore assignment warning: sage/ext/multi_modular.pyx:568:18: local variable 'u' referenced b= efore assignment warning: sage/ext/multi_modular.pyx:613:18: local variable 'u' referenced b= efore assignment warning: sage/graphs/chrompoly.pyx:183:18: local variable 'coeff' reference= d before assignment warning: sage/graphs/chrompoly.pyx:184:21: local variable 'm' referenced be= fore assignment cython --gdb --cplus --old-style-globals --embed-positions --directive cdiv= ision=3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6 -o sage/algebras/letterplace/free_alge= bra_element_letterplace.cpp sage/algebras/letterplace/free_algebra_element_= letterplace.pyx sage/algebras/letterplace/free_algebra_element_letterplace.pyx --> build/sa= ge/algebras/letterplace/free_algebra_element_letterplace.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/categories/action.c sage/categories= /action.pyx sage/categories/action.pyx --> build/sage/categories/action.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/categories/map.c sage/categories/ma= p.pyx sage/categories/map.pyx --> build/sage/categories/map.pyx cython --gdb --cplus --old-style-globals --embed-positions --directive cdiv= ision=3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6 -o sage/combinat/matrices/dancing_link= s.cpp sage/combinat/matrices/dancing_links.pyx sage/combinat/matrices/dancing_links.pyx --> build/sage/combinat/matrices/d= ancing_links.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/list_clone_timings_cy.c s= age/structure/list_clone_timings_cy.pyx sage/structure/list_clone_timings_cy.pyx --> build/sage/structure/list_clon= e_timings_cy.pyx cython --gdb --cplus --old-style-globals --embed-positions --directive cdiv= ision=3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6 -o sage/combinat/words/word_datatypes.= cpp sage/combinat/words/word_datatypes.pyx sage/combinat/words/word_datatypes.pyx --> build/sage/combinat/words/word_d= atatypes.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/combinat/dict_addition.c sage/combi= nat/dict_addition.pyx sage/combinat/dict_addition.pyx --> build/sage/combinat/dict_addition.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/combinat/combinat_cython.c sage/com= binat/combinat_cython.pyx sage/combinat/combinat_cython.pyx --> build/sage/combinat/combinat_cython.p= yx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/ext/fast_eval.c sage/ext/fast_eval.= pyx sage/ext/fast_eval.pyx --> build/sage/ext/fast_eval.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/finance/fractal.c sage/finance/frac= tal.pyx sage/finance/fractal.pyx --> build/sage/finance/fractal.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/finance/time_series.c sage/finance/= time_series.pyx sage/finance/time_series.pyx --> build/sage/finance/time_series.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/graphs/graph_generators_pyx.c sage/= graphs/graph_generators_pyx.pyx [....] sage/libs/pari/gen.c: In function =E2=80=98__pyx_pf_4sage_4libs_4pari_3gen_= 3gen_84__setitem__=E2=80=99: sage/libs/pari/gen.c:8957:360: warning: return makes integer from pointer w= ithout a cast [enabled by default] sage/libs/pari/gen.c:8977:54: warning: comparison of distinct pointer types= lacks a cast [enabled by default] sage/libs/pari/gen.c:8977:5: warning: passing argument 2 of =E2=80=98PyType= _IsSubtype=E2=80=99 from incompatible pointer type [enabled by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/pari/gen.c:9028:54: warning: comparison of distinct pointer types= lacks a cast [enabled by default] sage/libs/pari/gen.c:9028:5: warning: passing argument 2 of =E2=80=98PyType= _IsSubtype=E2=80=99 from incompatible pointer type [enabled by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/pari/gen.c: In function =E2=80=98__pyx_pf_4sage_4libs_4pari_3gen_= 12PariInstance___init__=E2=80=99: sage/libs/pari/gen.c:46840:363: warning: return makes integer from pointer = without a cast [enabled by default] sage/libs/pari/gen.c:46927:19: warning: assignment from incompatible pointe= r type [enabled by default] sage/libs/pari/gen.c: In function =E2=80=98__pyx_pf_4sage_4libs_4pari_3gen_= 12PariInstance_28__call__=E2=80=99: sage/libs/pari/gen.c:49372:54: warning: comparison of distinct pointer type= s lacks a cast [enabled by default] sage/libs/pari/gen.c:49372:5: warning: passing argument 2 of =E2=80=98PyTyp= e_IsSubtype=E2=80=99 from incompatible pointer type [enabled by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/pari/gen.c:49399:54: warning: comparison of distinct pointer type= s lacks a cast [enabled by default] sage/libs/pari/gen.c:49399:5: warning: passing argument 2 of =E2=80=98PyTyp= e_IsSubtype=E2=80=99 from incompatible pointer type [enabled by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/pari/gen.c:49506:19: warning: assignment from incompatible pointe= r type [enabled by default] sage/libs/pari/gen.c:49509:19: warning: assignment from incompatible pointe= r type [enabled by default] sage/libs/pari/gen.c: In function =E2=80=98initgen=E2=80=99: sage/libs/pari/gen.c:57971:361: warning: =E2=80=98return=E2=80=99 with a va= lue, in function returning void [enabled by default] x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/pari/gen.o -L/usr//lib -L/usr/lib64 -lcsage -lpari -lgmp -lstdc++ -= lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6= -python2_7/lib/sage/libs/pari/gen.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -I= sage/ext -I/usr/include/python2.7 -c sage/libs/singular/polynomial.cpp -o /= var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux= -x86_64-2.7/sage/libs/singular/polynomial.o -D__STDC_LIMIT_MACROS -DNDEBUG sage/libs/singular/singular.cpp: In function =E2=80=98snumber* __pyx_f_4sag= e_4libs_8singular_8singular_sa2si_ZZmod(__pyx_obj_4sage_5rings_12finite_rin= gs_11integer_mod_IntegerMod_abstract*, ip_sring*)=E2=80=99: sage/libs/singular/singular.cpp:5726:37: warning: cast to pointer from inte= ger of different size [-Wint-to-pointer-cast] x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/singular/singular.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline= -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var= /tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs= /singular/singular.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -I= sage/ext -I/usr/include/python2.7 -c sage/libs/singular/ring.cpp -o /var/tm= p/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_6= 4-2.7/sage/libs/singular/ring.o -D__STDC_LIMIT_MACROS -DNDEBUG x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/singular/polynomial.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadli= ne -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /v= ar/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/li= bs/singular/polynomial.so x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/singular/ring.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -ls= ingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/tmp= /portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/sin= gular/ring.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -I= sage/ext -I/usr/include/python2.7 -c sage/libs/singular/groebner_strategy.c= pp -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/tem= p.linux-x86_64-2.7/sage/libs/singular/groebner_strategy.o -D__STDC_LIMIT_MA= CROS -DNDEBUG x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/singular/groebner_strategy.o -L/usr//lib -L/usr/lib64 -lcsage -lm -= lreadline -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.= 7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/= sage/libs/singular/groebner_strategy.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -I= sage/ext -I/usr/include/python2.7 -c sage/libs/singular/function.cpp -o /va= r/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x= 86_64-2.7/sage/libs/singular/function.o -D__STDC_LIMIT_MACROS -DNDEBUG sage/libs/singular/function.cpp: In function =E2=80=98int __pyx_pf_4sage_4l= ibs_8singular_8function_9Converter___init__(__pyx_obj_4sage_4libs_8singular= _8function_Converter*, PyObject*, PyObject*, PyObject*)=E2=80=99: sage/libs/singular/function.cpp:7080:127: warning: cast to pointer from int= eger of different size [-Wint-to-pointer-cast] x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/singular/function.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline= -lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var= /tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs= /singular/function.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include/singular -I/usr//include -I/usr/include/csage -I= sage/ext -I/usr/include/python2.7 -c sage/libs/singular/option.cpp -o /var/= tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86= _64-2.7/sage/libs/singular/option.o -D__STDC_LIMIT_MACROS -DNDEBUG x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/singular/option.o -L/usr//lib -L/usr/lib64 -lcsage -lm -lreadline -= lsingular -lgivaro -lntl -lgmpxx -lgmp -lstdc++ -lntl -lpython2.7 -o /var/t= mp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/s= ingular/option.so x86_64-pc-linux-gnu-gcc -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr/include/malloc/ -I/usr//include -I/usr/include/csage -Isa= ge/ext -I/usr/include/python2.7 -c sage/libs/symmetrica/symmetrica.c -o /va= r/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x= 86_64-2.7/sage/libs/symmetrica/symmetrica.o x86_64-pc-linux-gnu-gcc -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/mpmath/utils.c -o /var/tmp/portage/sci-mathematics/sa= ge-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/utils= =2Eo sage/libs/symmetrica/symmetrica.c: In function =E2=80=98__pyx_f_4sage_4libs= _10symmetrica_10symmetrica__op=E2=80=99: sage/libs/symmetrica/symmetrica.c:2838:52: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:2838:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c:2862:52: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:2862:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c:2886:52: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:2886:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c: In function =E2=80=98__pyx_f_4sage_4libs= _10symmetrica_10symmetrica__op_schur_general=E2=80=99: sage/libs/symmetrica/symmetrica.c:7449:52: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:7449:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c: In function =E2=80=98__pyx_f_4sage_4libs= _10symmetrica_10symmetrica__op_schubert_general=E2=80=99: sage/libs/symmetrica/symmetrica.c:7822:52: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:7822:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c: In function =E2=80=98__pyx_pf_4sage_4lib= s_10symmetrica_10symmetrica_6kostka_number_symmetrica=E2=80=99: sage/libs/symmetrica/symmetrica.c:9287:56: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:9287:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c:9302:54: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:9302:5: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c:9362:56: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:9362:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c: In function =E2=80=98__pyx_pf_4sage_4lib= s_10symmetrica_10symmetrica_8kostka_tab_symmetrica=E2=80=99: sage/libs/symmetrica/symmetrica.c:9585:56: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:9585:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c:9600:54: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:9600:5: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 sage/libs/symmetrica/symmetrica.c:9660:56: warning: comparison of distinct = pointer types lacks a cast [enabled by default] sage/libs/symmetrica/symmetrica.c:9660:3: warning: passing argument 2 of = =E2=80=98PyType_IsSubtype=E2=80=99 from incompatible pointer type [enabled = by default] /usr/include/python2.7/object.h:437:5: note: expected =E2=80=98struct PyTyp= eObject *=E2=80=99 but argument is of type =E2=80=98struct PyObject *=E2=80= =99 x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/symmetrica/symmetrica.o -L/usr//lib -L/usr/lib64 -lcsage -lsymmetri= ca -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/= work/sage-5.6-python2_7/lib/sage/libs/symmetrica/symmetrica.so x86_64-pc-linux-gnu-gcc -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/mpmath/ext_impl.c -o /var/tmp/portage/sci-mathematics= /sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ex= t_impl.o x86_64-pc-linux-gnu-gcc -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/mpmath/ext_main.c -o /var/tmp/portage/sci-mathematics= /sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/ex= t_main.o sage/libs/mpmath/ext_impl.c: In function =E2=80=98__pyx_f_4sage_4libs_6mpma= th_8ext_impl_MPF_normalize=E2=80=99: sage/libs/mpmath/ext_impl.c:5715:7: warning: passing argument 1 of =E2=80= =98__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpz_tstbit_abs=E2=80=99 from incom= patible pointer type [enabled by default] sage/libs/mpmath/ext_impl.c:2530:12: note: expected =E2=80=98struct __mpz_s= truct *=E2=80=99 but argument is of type =E2=80=98struct __mpz_struct (*)[1= ]=E2=80=99 sage/libs/mpmath/ext_impl.c:5725:9: warning: passing argument 1 of =E2=80= =98__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpz_tstbit_abs=E2=80=99 from incom= patible pointer type [enabled by default] sage/libs/mpmath/ext_impl.c:2530:12: note: expected =E2=80=98struct __mpz_s= truct *=E2=80=99 but argument is of type =E2=80=98struct __mpz_struct (*)[1= ]=E2=80=99 sage/libs/mpmath/ext_impl.c:5729:11: warning: passing argument 1 of =E2=80= =98__pyx_f_4sage_4libs_6mpmath_8ext_impl_mpz_tstbit_abs=E2=80=99 from incom= patible pointer type [enabled by default] sage/libs/mpmath/ext_impl.c:2530:12: note: expected =E2=80=98struct __mpz_s= truct *=E2=80=99 but argument is of type =E2=80=98struct __mpz_struct (*)[1= ]=E2=80=99 sage/libs/mpmath/ext_impl.c: In function =E2=80=98__pyx_f_4sage_4libs_6mpma= th_8ext_impl__add_perturbation=E2=80=99: sage/libs/mpmath/ext_impl.c:7216:5: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c: In function =E2=80=98__pyx_f_4sage_4libs_6mpma= th_8ext_impl_MPF_add=E2=80=99: sage/libs/mpmath/ext_impl.c:7421:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c:7430:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c:7551:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c:7560:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c: In function =E2=80=98__pyx_f_4sage_4libs_6mpma= th_8ext_impl_MPF_sub=E2=80=99: sage/libs/mpmath/ext_impl.c:7850:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c:7859:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c:7980:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 sage/libs/mpmath/ext_impl.c:7989:9: warning: passing argument 1 of =E2=80= =98__gmpz_sizeinbase=E2=80=99 from incompatible pointer type [enabled by de= fault] /usr/include/gmp.h:1051:9: note: expected =E2=80=98mpz_srcptr=E2=80=99 but = argument is of type =E2=80=98struct __pyx_t_4sage_4libs_6mpmath_8ext_impl_M= PF *=E2=80=99 x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/mpmath/ext_impl.o -L/usr//lib -L/usr/lib64 -lcsage -lmpfr -lgmp -ls= tdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/s= age-5.6-python2_7/lib/sage/libs/mpmath/ext_impl.so sage/libs/mpmath/ext_main.c:2023:31: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_mpzi=E2=80=99 declared =E2=80=98inline=E2=80=99 = [enabled by default] sage/libs/mpmath/ext_main.c:2024:31: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_mpzl=E2=80=99 declared =E2=80=98inline=E2=80=99 = [enabled by default] sage/libs/mpmath/ext_main.c:2025:31: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_rndmode_to_python=E2=80=99 declared =E2=80=98inl= ine=E2=80=99 [enabled by default] sage/libs/mpmath/ext_main.c:2026:31: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_rndmode_from_python=E2=80=99 declared =E2=80=98i= nline=E2=80=99 [enabled by default] sage/libs/mpmath/ext_main.c:2027:26: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_MPF_init=E2=80=99 declared =E2=80=98inline=E2=80= =99 [enabled by default] sage/libs/mpmath/ext_main.c:2028:26: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_MPF_clear=E2=80=99 declared =E2=80=98inline=E2= =80=99 [enabled by default] sage/libs/mpmath/ext_main.c:2029:26: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_MPF_set=E2=80=99 declared =E2=80=98inline=E2=80= =99 [enabled by default] sage/libs/mpmath/ext_main.c:2030:26: warning: variable =E2=80=98__pyx_f_4sa= ge_4libs_6mpmath_8ext_impl_MPF_set_zero=E2=80=99 declared =E2=80=98inline= =E2=80=99 [enabled by default] x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/mpmath/ext_main.o -L/usr//lib -L/usr/lib64 -lcsage -lgmp -lstdc++ -= lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6= -python2_7/lib/sage/libs/mpmath/ext_main.so x86_64-pc-linux-gnu-gcc -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/mpmath/ext_libmp.c -o /var/tmp/portage/sci-mathematic= s/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/mpmath/e= xt_libmp.o sage/libs/mpmath/ext_libmp.c:1800:31: warning: variable =E2=80=98__pyx_f_4s= age_4libs_6mpmath_8ext_impl_rndmode_from_python=E2=80=99 declared =E2=80=98= inline=E2=80=99 [enabled by default] sage/libs/mpmath/ext_libmp.c:1801:26: warning: variable =E2=80=98__pyx_f_4s= age_4libs_6mpmath_8ext_impl_MPF_init=E2=80=99 declared =E2=80=98inline=E2= =80=99 [enabled by default] x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/mpmath/ext_libmp.o -L/usr//lib -L/usr/lib64 -lcsage -lgmp -lstdc++ = -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.= 6-python2_7/lib/sage/libs/mpmath/ext_libmp.so x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/mpmath/utils.o -L/usr//lib -L/usr/lib64 -lcsage -lmpfr -lgmp -lstdc= ++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathematics/sage-5.6/work/sage= -5.6-python2_7/lib/sage/libs/mpmath/utils.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -DNTL_ALL -I/usr//include -I/usr/include/csage -Isage/ext -I/usr= /include/python2.7 -c sage/libs/cremona/homspace.cpp -o /var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/l= ibs/cremona/homspace.o x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -DNTL_ALL -I/usr//include -I/usr/include/csage -Isage/ext -I/usr= /include/python2.7 -c sage/libs/cremona/mat.cpp -o /var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/c= remona/mat.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/cremona/homspace.o -L/usr//lib -L/usr/lib64 -lcsage -lec -lntl -lpa= ri -lgmpxx -lgmp -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/cremona/ho= mspace.so x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/cremona/mat.o -L/usr//lib -L/usr/lib64 -lcsage -lec -lntl -lpari -l= gmpxx -lgmp -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci= -mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/cremona/mat.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -DNTL_ALL -I/usr//include -I/usr/include/csage -Isage/ext -I/usr= /include/python2.7 -c sage/libs/cremona/newforms.cpp -o /var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/l= ibs/cremona/newforms.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/cremona/newforms.o -L/usr//lib -L/usr/lib64 -lcsage -lec -lntl -lpa= ri -lgmpxx -lgmp -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/cremona/ne= wforms.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_GF2.cpp -o /var/tmp/portage/sci-mathematics/s= age-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF2= =2Eo x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_GF2.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp = -lgmpxx -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-mathema= tics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_GF2E.cpp -o /var/tmp/portage/sci-mathematics/= sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF= 2E.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_GF2E.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp= -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-ma= thematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2E.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_GF2EContext.cpp -o /var/tmp/portage/sci-mathe= matics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl= /ntl_GF2EContext.o x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_GF2EX.cpp -o /var/tmp/portage/sci-mathematics= /sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_G= F2EX.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_GF2EContext.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lnt= l -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage= /sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2= EContext.so x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_GF2EX.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgm= p -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-m= athematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2EX.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_GF2X.cpp -o /var/tmp/portage/sci-mathematics/= sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_GF= 2X.o x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_lzz_p.cpp -o /var/tmp/portage/sci-mathematics= /sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_l= zz_p.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_GF2X.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgmp= -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-ma= thematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_GF2X.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_lzz_pContext.cpp -o /var/tmp/portage/sci-math= ematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/nt= l/ntl_lzz_pContext.o x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_lzz_pX.cpp -o /var/tmp/portage/sci-mathematic= s/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_= lzz_pX.o x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_mat_GF2.cpp -o /var/tmp/portage/sci-mathemati= cs/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl= _mat_GF2.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_lzz_pContext.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -ln= tl -lgmp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_lz= z_pContext.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_mat_GF2E.cpp -o /var/tmp/portage/sci-mathemat= ics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/nt= l_mat_GF2E.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_lzz_p.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lgm= p -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-m= athematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_lzz_p.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_mat_ZZ.cpp -o /var/tmp/portage/sci-mathematic= s/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_= mat_ZZ.o x86_64-pc-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash= -style=3Dgnu -march=3Dnative -O2 -pipe -fno-strict-aliasing /var/tmp/portag= e/sci-mathematics/sage-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sa= ge/libs/ntl/ntl_lzz_pX.o -L/usr//lib -L/usr/lib64 -lcsage -lcsage -lntl -lg= mp -lgmpxx -lm -lstdc++ -lstdc++ -lntl -lpython2.7 -o /var/tmp/portage/sci-= mathematics/sage-5.6/work/sage-5.6-python2_7/lib/sage/libs/ntl/ntl_lzz_pX.so x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_ZZ.cpp -o /var/tmp/portage/sci-mathematics/sa= ge-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_ZZ.o In file included from sage/libs/ppl.cpp:264:0: /usr/include/ppl.hh:3687:7: error: redefinition of =E2=80=98class std::nume= ric_limits<__gmp_expr<__mpz_struct [1], __mpz_struct [1]> >=E2=80=99 /usr/include/gmpxx.h:3269:21: error: previous definition of =E2=80=98class = std::numeric_limits<__gmp_expr<__mpz_struct [1], __mpz_struct [1]> >=E2=80= =99 /usr/include/ppl.hh:3748:7: error: redefinition of =E2=80=98class std::nume= ric_limits<__gmp_expr<__mpq_struct [1], __mpq_struct [1]> >=E2=80=99 /usr/include/gmpxx.h:3306:21: error: previous definition of =E2=80=98class = std::numeric_limits<__gmp_expr<__mpq_struct [1], __mpq_struct [1]> >=E2=80= =99 error: command 'x86_64-pc-linux-gnu-g++' failed with exit status 1 x86_64-pc-linux-gnu-g++ -pthread -march=3Dnative -O2 -pipe -fno-strict-alia= sing -fPIC -I/usr//include -I/usr/include/csage -Isage/ext -I/usr/include/p= ython2.7 -c sage/libs/ntl/ntl_ZZX.cpp -o /var/tmp/portage/sci-mathematics/s= age-5.6/work/sage-5.6-python2_7/temp.linux-x86_64-2.7/sage/libs/ntl/ntl_ZZX= =2Eo -positions --directive cdivision=3DTrue,autotestdict=3DFalse,fast_getattr= =3DTrue -I/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-5.6 -o sage/r= ings/polynomial/multi_polynomial_libsingular.cpp sage/rings/polynomial/mult= i_polynomial_libsingular.pyx sage/rings/polynomial/multi_polynomial_libsingular.pyx --> build/sage/rings= /polynomial/multi_polynomial_libsingular.pyx cython --gdb --cplus --old-style-globals --embed-positions --directive cdiv= ision=3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6 -o sage/rings/polynomial/polynomial_in= teger_dense_flint.cpp sage/rings/polynomial/polynomial_integer_dense_flint.= pyx sage/rings/polynomial/polynomial_integer_dense_flint.pyx --> build/sage/rin= gs/polynomial/polynomial_integer_dense_flint.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/rings/polynomial/real_roots.c sage/= rings/polynomial/real_roots.pyx sage/rings/polynomial/real_roots.pyx --> build/sage/rings/polynomial/real_r= oots.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/stats/intlist.c sage/stats/intlist.= pyx sage/stats/intlist.pyx --> build/sage/stats/intlist.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/coerce_maps.c sage/struct= ure/coerce_maps.pyx sage/structure/coerce_maps.pyx --> build/sage/structure/coerce_maps.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/parent.c sage/structure/p= arent.pyx sage/structure/parent.pyx --> build/sage/structure/parent.pyx cython --gdb --cplus --old-style-globals --embed-positions --directive cdiv= ision=3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6 -o sage/symbolic/function.cpp sage/sym= bolic/function.pyx sage/symbolic/function.pyx --> build/sage/symbolic/function.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/tests/cython.c sage/tests/cython.pyx sage/tests/cython.pyx --> build/sage/tests/cython.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/libs/lrcalc/lrcalc.c sage/libs/lrca= lc/lrcalc.pyx sage/libs/lrcalc/lrcalc.pyx --> build/sage/libs/lrcalc/lrcalc.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/ext/interpreters/wrapper_py.c sage/= ext/interpreters/wrapper_py.pyx sage/ext/interpreters/wrapper_py.pyx --> build/sage/ext/interpreters/wrappe= r_py.pyx 5.6/work/sage-5.6 -o sage/structure/category_object.c sage/structure/catego= ry_object.pyx sage/structure/category_object.pyx --> build/sage/structure/category_object= =2Epyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/coerce_actions.c sage/str= ucture/coerce_actions.pyx sage/structure/coerce_actions.pyx --> build/sage/structure/coerce_actions.p= yx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/factory.c sage/structure/= factory.pyx sage/structure/factory.pyx --> build/sage/structure/factory.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/generators.c sage/structu= re/generators.pyx sage/structure/generators.pyx --> build/sage/structure/generators.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/parent_base.c sage/struct= ure/parent_base.pyx sage/structure/parent_base.pyx --> build/sage/structure/parent_base.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/structure/sage_object.c sage/struct= ure/sage_object.pyx sage/structure/sage_object.pyx --> build/sage/structure/sage_object.pyx cython --gdb --cplus --old-style-globals --embed-positions --directive cdiv= ision=3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sc= i-mathematics/sage-5.6/work/sage-5.6 -o sage/symbolic/expression.cpp sage/s= ymbolic/expression.pyx sage/symbolic/expression.pyx --> build/sage/symbolic/expression.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/sat/solvers/satsolver.c sage/sat/so= lvers/satsolver.pyx sage/sat/solvers/satsolver.pyx --> build/sage/sat/solvers/satsolver.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/ext/interpreters/wrapper_rdf.c sage= /ext/interpreters/wrapper_rdf.pyx sage/ext/interpreters/wrapper_rdf.pyx --> build/sage/ext/interpreters/wrapp= er_rdf.pyx bolic/ring.pyx --> build/sage/symbolic/ring.pyx cython --gdb --old-style-globals --embed-positions --directive cdivision= =3DTrue,autotestdict=3DFalse,fast_getattr=3DTrue -I/var/tmp/portage/sci-mat= hematics/sage-5.6/work/sage-5.6 -o sage/ext/interpreters/wrapper_rr.c sage/= ext/interpreters/wrapper_rr.pyx sage/ext/interpreters/wrapper_rr.pyx --> build/sage/ext/interpreters/wrappe= r_rr.pyx =1B[31;01m*=1B[0m ERROR: sci-mathematics/sage-5.6 failed (compile phase): =1B[31;01m*=1B[0m (no error message) =1B[31;01m*=1B[0m=20 =1B[31;01m*=1B[0m Call stack: =1B[31;01m*=1B[0m ebuild.sh, line 93: Called src_compile =1B[31;01m*=1B[0m environment, line 3709: Called distutils-r1_src_compi= le =1B[31;01m*=1B[0m environment, line 1198: Called _distutils-r1_run_fore= ach_impl 'distutils-r1_python_compile' =1B[31;01m*=1B[0m environment, line 434: Called python_foreach_impl 'd= istutils-r1_run_phase' 'distutils-r1_python_compile' =1B[31;01m*=1B[0m environment, line 3395: Called distutils-r1_run_phase= 'distutils-r1_python_compile' =1B[31;01m*=1B[0m environment, line 1181: Called distutils-r1_python_co= mpile =1B[31;01m*=1B[0m environment, line 1093: Called esetup.py 'build' =1B[31;01m*=1B[0m environment, line 1926: Called die =1B[31;01m*=1B[0m The specific snippet of code: =1B[31;01m*=1B[0m "${@}" || die =1B[31;01m*=1B[0m=20 =1B[31;01m*=1B[0m If you need support, post the output of `emerge --info '= =3Dsci-mathematics/sage-5.6'`, =1B[31;01m*=1B[0m the complete build log and the output of `emerge -pqv '= =3Dsci-mathematics/sage-5.6'`. =1B[31;01m*=1B[0m This ebuild is from an overlay named 'sage-on-gentoo': '= /var/lib/layman/sage-on-gentoo/' =1B[31;01m*=1B[0m The complete build log is located at '/var/tmp/portage/s= ci-mathematics/sage-5.6/temp/build.log'. =1B[31;01m*=1B[0m The ebuild environment file is located at '/var/tmp/port= age/sci-mathematics/sage-5.6/temp/environment'. =1B[31;01m*=1B[0m Working directory: '/var/tmp/portage/sci-mathematics/sag= e-5.6/work/sage-5.6' =1B[31;01m*=1B[0m S: '/var/tmp/portage/sci-mathematics/sage-5.6/work/sage-= 5.6' --VS++wcV0S1rZb1Fb-- --LyciRD1jyfeSSjG0 Content-Type: application/pgp-signature; name="signature.asc" Content-Description: Digital signature -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.19 (GNU/Linux) iJwEAQEIAAYFAlEHo7QACgkQQYXt1pFHaaHpDgQAoAagPDtblurmKIYXpyjSN+9Q XDbXxNnsjPLAfBUr3W5cG3IJ5dFOVfNkqoNN9ZOO/Toc8NEzITTdjCbLphT6X5l3 bLHXvvPh4gWLnigc6bZxPuRXTcSWshWKsg3rQsH8IAdwBHl3sglZQpG72gLW7k4Y mA6AJgHZNFFHRo85nK0= =kxEQ -----END PGP SIGNATURE----- --LyciRD1jyfeSSjG0--