From: Thomas Kahle <tomka@gentoo.org>
To: gentoo-science@lists.gentoo.org
Subject: Re: [gentoo-science] blas/lapack stuff
Date: Sat, 27 Oct 2012 10:42:00 -0700 [thread overview]
Message-ID: <20121027174200.GT13271@schlaumatte> (raw)
In-Reply-To: <508BA04C.1060407@slingshot.co.nz>
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On 21:50 Sat 27 Oct 2012, Francois Bissey wrote:
> On 27/10/12 10:53, Thomas Kahle wrote:
> > On 17:10 Wed 10 Oct 2012, justin wrote:
> > [..]
> >
> >>> Calculating dependencies... done!
> >>> [ebuild N ] app-admin/eselect-lapack-0.1 0 kB
> >>> [blocks B ] app-admin/eselect-lapack ("app-admin/eselect-lapack"
> >>> is blocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218,
> >>> sci-libs/blas-reference-20110418, sci-libs/atlas-3.10.0,
> >>> sci-libs/lapack-reference-3.3.1-r1)
> >>>
> >>> Total: 1 package (1 new), Size of downloads: 0 kB
> >>> Conflict: 1 block (1 unsatisfied)
> >>>
> >>> * Error: The above package list contains packages which cannot be
> >>> * installed at the same time on the same system.
> >>>
> >>> (sci-libs/cblas-reference-20110218::science, installed) pulled in by
> >>> sci-libs/cblas-reference required by @selected
> >>>
> >>> (app-admin/eselect-lapack-0.1::gentoo, ebuild scheduled for merge)
> >>> pulled in by
> >>> eselect-lapack
> >>>
> >>> (sci-libs/atlas-3.10.0::science, installed) pulled in by
> >>> sci-libs/atlas required by @selected
> >>>
> >>>
> >
> >> do you have the eselect version from the sci overlay installed? Only
> >> that one is able to eslect blas for you correctly.
> >
> > I'm using this eselect version and I have lapack reference-3.4.2
> > installed and eselected. Still I get:
> >
> > # pkg-config --libs lapack
> > Package lapack was not found in the pkg-config search path.
> > Perhaps you should add the directory containing `lapack.pc'
> > to the PKG_CONFIG_PATH environment variable
> > No package 'lapack' found
> >
> > Which makes packages depending on lapack checks during configure fail.
> >
> > Any ideas
> >
>
> First of, supposing you are on amd64, does
> /usr/lib64/pkgconfig/lapack.pc
> exist? It should be a link pointing to
> ../../../etc/env.d/alternatives/lapack/_current/usr/lib64/pkgconfig/lapack.pc
> itself a link to /usr/lib64/pkgconfig/reflapack.pc
Yes, it exists, but no it is a symlink to the wrong pc file:
$ ls -ahl /usr/lib64/pkgconfig/lapack.pc
lrwxrwxrwx 1 root root 77 Oct 26 15:19 /usr/lib64/pkgconfig/lapack.pc -> ../../../etc/env.d/alternatives/lapack/_current/usr/lib64/pkgconfig/lapack.pc
Which package is to provide this symlink? It seems that it is a stale
symlink from before -llapack was renamed to -lreflapack recently?
I'm experimenting with the different implementations, it is entirely
possible that I'm in some undefined state. Now, how to fix it?
Thanks!
Thomas
> It is possible that some of these links have not been created properly.
> There used to be bug about it on prefix (I don't know if anyone improved
> my prefix bandaid). There is also the possibility that remnant from the
> non-sci overlay mechanism interfere.
>
> Francois
>
>
--
Thomas Kahle
http://dev.gentoo.org/~tomka/
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next prev parent reply other threads:[~2012-10-27 18:02 UTC|newest]
Thread overview: 20+ messages / expand[flat|nested] mbox.gz Atom feed top
2011-10-11 4:42 [gentoo-science] blas/lapack stuff Andrey G. Grozin
2011-10-11 7:43 ` Andrea Arteaga
2011-12-21 10:39 ` [gentoo-science] sci-mathematics/reduce on amd64 Andrey G. Grozin
2011-12-21 11:01 ` Kacper Kowalik
2011-12-21 11:13 ` Miguel de Val-Borro
2011-12-21 13:53 ` Andrey G. Grozin
2011-12-21 14:24 ` Burcin Erocal
2011-12-21 14:57 ` Andrey G. Grozin
2011-12-21 14:35 ` Christopher Schwan
2012-09-26 3:09 ` [gentoo-science] blas/lapack stuff Andrey G. Grozin
2012-09-26 5:52 ` Kacper Kowalik
2012-09-26 11:20 ` Francois Bissey
2012-09-26 14:09 ` Sébastien Fabbro
2012-10-10 12:28 ` denis cohen
2012-10-10 15:10 ` justin
2012-10-26 21:53 ` Thomas Kahle
2012-10-27 8:50 ` Francois Bissey
2012-10-27 17:42 ` Thomas Kahle [this message]
2012-10-27 18:27 ` Francois Bissey
2011-10-11 9:25 ` My Th
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