From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1SaboZ-0001EM-4H for garchives@archives.gentoo.org; Sat, 02 Jun 2012 00:03:31 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id B7E43E0654 for ; Sat, 2 Jun 2012 00:03:30 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 0138CE0531 for ; Fri, 1 Jun 2012 21:17:14 +0000 (UTC) Received: from localhost (unknown [213.55.176.82]) (using TLSv1 with cipher DHE-RSA-AES128-SHA (128/128 bits)) (No client certificate requested) (Authenticated sender: tomka) by smtp.gentoo.org (Postfix) with ESMTPSA id DA14E1B4011 for ; Fri, 1 Jun 2012 21:17:10 +0000 (UTC) Date: Fri, 1 Jun 2012 23:13:58 +0200 From: Thomas Kahle To: gentoo-science@lists.gentoo.org Subject: Re: [gentoo-science] World updates with sage installed - portage bug? Message-ID: <20120601211358.GK22017@schlaumatte.ethz.ch> References: <20120601095224.GI22017@schlaumatte.ethz.ch> <2406647.QNWjxfJBFB@vrooom-vrooom> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="+SfteS7bOf3dGlBC" Content-Disposition: inline In-Reply-To: <2406647.QNWjxfJBFB@vrooom-vrooom> X-Arbitrary-Number-Of-The-Day: 42 User-Agent: Mutt/1.5.21 (2010-09-15) X-Archives-Salt: b35c11c2-8bd8-4c53-a713-8a4f521cdc20 X-Archives-Hash: 0e07249b2acbd55e8a688b67d024b185 --+SfteS7bOf3dGlBC Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On 07:26 Sat 02 Jun 2012, Francois Bissey wrote: > On Fri, 01 Jun 2012 11:52:24 Thomas Kahle wrote: > > Hi, > >=20 > > now that I have sage-on-gentoo installed I can't do world updates with > > the -D option anymore. Looks like a portage quirk to me. > >=20 > > There seem to be at least two problems: > >=20 > > I have sci-mathematics/singular in my world file and the -D option > > forces portage to think that I insist on the latest version. Therefore > > it collides with sage-on-gentoo insisting on 3.1.3: > >=20 > > sci-mathematics/singular:0 > >=20 > > (sci-mathematics/singular-3.1.3.3::gentoo, installed) pulled in by > > ~sci-mathematics/singular-3.1.3.3 required by > > (sci-mathematics/sage-5.0-r1::sage-on-gentoo, installed) > >=20 > > (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for merg= e) > > pulled in by (no parents that aren't satisfied by other packages in this > > slot) > >=20 > >=20 > > There also is an eselect issue. I don't know why, but eselect-blas and > > eselect-lapack are pulled in, although blocked by the new gsl: > >=20 > > [blocks B ] app-admin/eselect-blas ("app-admin/eselect-blas" is > > blocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) [bloc= ks B > > ] app-admin/eselect-lapack ("app-admin/eselect-lapack" is blocking > > sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) > >=20 > > However, without the -D option I just get a warning: > >=20 > > WARNING: One or more updates have been skipped due to a dependency conf= lict: > >=20 > > sci-mathematics/singular:0 > >=20 > > (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for merg= e) > > conflicts with ~sci-mathematics/singular-3.1.3.3 required by > > (sci-mathematics/sage-5.0-r1::sage-on-gentoo, installed) > >=20 > >=20 > > Any ideas? Shall I carry this to the portage mailing list? > > Cheers, > We need to know what pulls these eselect modules. What is the portage > output when you add the "t" option. It should show what wants what. Goes back to dev-lang/R and sci-libs/superlu. My setup has superlu stable, but R keyworded ~amd64 the entire slot. [ebuild U ~] sci-mathematics/singular-3.1.4-r1 [3.1.3.3] USE=3D"boost d= oc emacs python%* readline -examples -test" 0 kB [nomerge ] dev-lang/R-2.15.0 USE=3D"X bash-completion cairo doc java= jpeg lapack nls openmp perl png readline tiff tk -icu -minimal -profile -s= tatic-libs" = = =20 [nomerge ] virtual/lapack-3.1=20 [nomerge ] sci-libs/lapack-reference-3.1.1-r1 USE=3D"-doc"=20 [ebuild N ] app-admin/eselect-lapack-0.1 0 kB [nomerge ] sci-mathematics/sage-5.0-r1::sage-on-gentoo USE=3D"latex = -testsuite"=20 [nomerge ] sci-libs/scipy-0.9.0-r1 USE=3D"-doc -umfpack"=20 [nomerge ] sci-libs/superlu-4.1-r1 USE=3D"-doc -examples -static-l= ibs -test"=20 [nomerge ] virtual/blas-1.0=20 [nomerge ] sci-libs/blas-reference-20070226 USE=3D"-doc"=20 [ebuild N ] app-admin/eselect-blas-0.1 0 kB [nomerge ] sci-mathematics/sage-5.0-r1::sage-on-gentoo USE=3D"latex = -testsuite"=20 [nomerge ] dev-python/sympy-0.7.1 USE=3D"gtk latex opengl pdf png -= doc -examples -imaging -ipython -mathml -pyglet -test -texmacs"=20 [ebuild U ] dev-python/pexpect-2.4::gentoo [2.0-r1::sage-on-gentoo] = USE=3D"-doc% -examples%" 0 kB [blocks B ] app-admin/eselect-lapack ("app-admin/eselect-lapack" is bl= ocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) [blocks B ] app-admin/eselect-blas ("app-admin/eselect-blas" is blocki= ng sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) Hope this helps, Cheers, Thomas --=20 Thomas Kahle http://dev.gentoo.org/~tomka/ --+SfteS7bOf3dGlBC Content-Type: application/pgp-signature; name="signature.asc" Content-Description: Digital signature -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.17 (GNU/Linux) iJwEAQEIAAYFAk/JMJYACgkQQYXt1pFHaaGPQwQAtwTkMq06VhMcXejx6Mzh6TZj 0kpMmULWiZprtTHoFNYM/1JGzByiHGKq9jXAxZEdVnhrPTIeWaW7sG+hWSIVkamf bHa3CP5HKNz27UnhJMnhCvywJioldxhs7W9IKWswNf57LjC/x1eV2mFJp0u0qF9A gF1PM2SxhHzISkA1KAw= =0ifV -----END PGP SIGNATURE----- --+SfteS7bOf3dGlBC--