From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1SaQa5-0001kd-2s for garchives@archives.gentoo.org; Fri, 01 Jun 2012 12:03:49 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id ACE86E0595 for ; Fri, 1 Jun 2012 12:03:48 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 479C5E002C for ; Fri, 1 Jun 2012 09:59:00 +0000 (UTC) Received: from localhost (blade.math.ethz.ch [129.132.146.66]) (using TLSv1 with cipher DHE-RSA-AES128-SHA (128/128 bits)) (No client certificate requested) (Authenticated sender: tomka) by smtp.gentoo.org (Postfix) with ESMTPSA id 61D051B4022 for ; Fri, 1 Jun 2012 09:58:59 +0000 (UTC) Date: Fri, 1 Jun 2012 11:52:24 +0200 From: Thomas Kahle To: Gentoo Science Subject: [gentoo-science] World updates with sage installed - portage bug? Message-ID: <20120601095224.GI22017@schlaumatte.ethz.ch> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="PHCdUe6m4AxPMzOu" Content-Disposition: inline X-Arbitrary-Number-Of-The-Day: 42 User-Agent: Mutt/1.5.21 (2010-09-15) X-Archives-Salt: 83c05bf3-44c4-4fa4-a5d5-7ac906f39775 X-Archives-Hash: 62b03a25153c85a6256f944a6bd2b54f --PHCdUe6m4AxPMzOu Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Hi, now that I have sage-on-gentoo installed I can't do world updates with the -D option anymore. Looks like a portage quirk to me. There seem to be at least two problems: I have sci-mathematics/singular in my world file and the -D option forces portage to think that I insist on the latest version. Therefore it collides with sage-on-gentoo insisting on 3.1.3: sci-mathematics/singular:0 (sci-mathematics/singular-3.1.3.3::gentoo, installed) pulled in by ~sci-mathematics/singular-3.1.3.3 required by (sci-mathematics/sage-5.0= -r1::sage-on-gentoo, installed) (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for merge) p= ulled in by (no parents that aren't satisfied by other packages in this slot) There also is an eselect issue. I don't know why, but eselect-blas and eselect-lapack are pulled in, although blocked by the new gsl: [blocks B ] app-admin/eselect-blas ("app-admin/eselect-blas" is blocki= ng sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) [blocks B ] app-admin/eselect-lapack ("app-admin/eselect-lapack" is bl= ocking sci-libs/gsl-1.15-r2, sci-libs/cblas-reference-20110218) However, without the -D option I just get a warning: WARNING: One or more updates have been skipped due to a dependency conflict: sci-mathematics/singular:0 (sci-mathematics/singular-3.1.4-r1::gentoo, ebuild scheduled for merge) c= onflicts with ~sci-mathematics/singular-3.1.3.3 required by (sci-mathematics/sage-5.0= -r1::sage-on-gentoo, installed) Any ideas? Shall I carry this to the portage mailing list? Cheers, Thomas --=20 Thomas Kahle http://dev.gentoo.org/~tomka/ --PHCdUe6m4AxPMzOu Content-Type: application/pgp-signature; name="signature.asc" Content-Description: Digital signature -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.17 (GNU/Linux) iJwEAQEIAAYFAk/IkNgACgkQQYXt1pFHaaGpoQP7BjLWWmTAirxgSByipD2nwG1U 2zbE5/OiPhU249FuOS+RcSG7u5hXnTC6qmPKb5LG0/cMupHaZr0JeL7PanPi7hU5 2KsE4v5UcZK8VH3MQsla2GrugM5nIIKwhA62ffCrg6XhdZHzkCRCGKHt6fvae1ae MfYU4iqMhxO1zJhuEIk= =tyzW -----END PGP SIGNATURE----- --PHCdUe6m4AxPMzOu--