From: Thomas Kahle <tomka@gentoo.org>
To: gentoo-science@lists.gentoo.org
Subject: Re: [gentoo-science] numpy conflict with sage-on-gentoo
Date: Wed, 30 May 2012 11:59:26 +0200 [thread overview]
Message-ID: <20120530095926.GR8884@schlaumatte.ethz.ch> (raw)
In-Reply-To: <4FC5E801.90401@gmail.com>
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On 17:27 Wed 30 May 2012, P Purkayastha wrote:
> On 05/30/2012 05:07 PM, Thomas Kahle wrote:
> > Hi,
> > I'm trying to build sage on gentoo but I get a conflict:
> >
> > !!! Multiple package instances within a single package slot have been pulled
> > !!! into the dependency graph, resulting in a slot conflict:
> >
> > dev-python/numpy:0
> >
> > (dev-python/numpy-1.5.1::sage-on-gentoo, ebuild scheduled for merge) pulled in by
> > ~dev-python/numpy-1.5.1 required by (sci-mathematics/sage-5.0-r1::sage-on-gentoo, ebuild scheduled for merge)
> >
> > (dev-python/numpy-1.6.0::gentoo, ebuild scheduled for merge) pulled in by
> > >=dev-python/numpy-1.5[lapack] required by (sci-libs/scipy-0.9.0-r1::gentoo, ebuild scheduled for merge)
> >
> > Any suggestions?
> >
> > Thanks!
> > Thomas
> >
>
> The latter package scipy depends on >=numpy-1.5 whereas sage depends on
> =numpy-1.5.1. So, simply mask the higher versions of numpy:
>
> If you have /etc/portage/package.mask directory then,
>
> echo ">dev-python/numpy-1.5.1" >> /etc/portage/package.mask/mask_numpy
>
> otherwise
>
> echo ">dev-python/numpy-1.5.1" >> /etc/portage/package.mask
... and now it pulls in eselect-cblas and gsl which are blocking each other:
[blocks B ] app-admin/eselect-cblas ("app-admin/eselect-cblas" is blocking sci-libs/gsl-1.15-r2)
* Error: The above package list contains packages which cannot be
* installed at the same time on the same system.
(app-admin/eselect-cblas-0.1::gentoo, ebuild scheduled for merge) pulled in by
app-admin/eselect-cblas required by (sci-libs/cblas-reference-20030223-r4::gentoo, ebuild scheduled for merge)
(sci-libs/gsl-1.15-r2::science, installed) pulled in by
sci-libs/gsl required by (media-gfx/inkscape-0.48.2::gentoo, installed)
>=sci-libs/gsl-1.15 required by (sci-mathematics/sage-5.0-r1::sage-on-gentoo, ebuild scheduled for merge)
What to do here?
--
Thomas Kahle
http://dev.gentoo.org/~tomka/
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next prev parent reply other threads:[~2012-05-30 12:04 UTC|newest]
Thread overview: 12+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-05-30 9:07 [gentoo-science] numpy conflict with sage-on-gentoo Thomas Kahle
2012-05-30 9:27 ` P Purkayastha
2012-05-30 9:56 ` Thomas Kahle
2012-05-30 9:59 ` Thomas Kahle [this message]
2012-05-30 10:27 ` P Purkayastha
2012-05-30 10:41 ` Andrea Arteaga
2012-05-30 18:32 ` fbissey
2012-05-31 6:44 ` Thomas Kahle
2012-05-31 7:03 ` [gentoo-science] Building sage-on-gentoo Thomas Kahle
2012-05-31 7:57 ` Christopher Schwan
2012-05-31 9:00 ` Christopher Schwan
2012-05-31 21:46 ` Thomas Kahle
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