* [gentoo-science] SAGE_LOCAL issues
@ 2011-11-19 23:20 Greg Laun
2011-11-20 5:31 ` fbissey
0 siblings, 1 reply; 3+ messages in thread
From: Greg Laun @ 2011-11-19 23:20 UTC (permalink / raw
To: gentoo-science
[-- Attachment #1: Type: text/plain, Size: 265 bytes --]
Hi,
I just emerged sage from sage-on-gentoo under sabayon. When I try to start sage, I get many error messages, which seem to point to SAGE_LOCAL being set to / instead
of /usr. I have attached the crash report.
Can anybody help me with this? Thanks.
Greg
[-- Attachment #2: Sage_crash_report.txt --]
[-- Type: text/plain, Size: 15830 bytes --]
***************************************************************************
IPython post-mortem report
IPython version: 0.10.2
Platform info : os.name -> posix, sys.platform -> linux2
***************************************************************************
Current user configuration structure:
{'Version': 0,
'__allownew': True,
'alias': [],
'args': [],
'autocall': 0,
'autoedit_syntax': 0,
'autoexec': [],
'autoindent': 1,
'automagic': 1,
'banner': 0,
'c': '',
'cache_size': 1000,
'classic': 0,
'color_info': 1,
'colors': 'NoColor',
'confirm_exit': 0,
'debug': 0,
'deep_reload': 0,
'editor': '/bin/nano',
'embedded': False,
'execfile': [],
'execute': ['',
"def view_all(): view([(i, globals()[i]) for i in variables()], title='All SAGE Variables')",
"def variables(): return [k for k in globals() if not k in iglob and len(k) > 0 and k[0] != '_']",
'import sage.misc.preparser_ipython; sage.misc.preparser_ipython.magma_colon_equals=True'],
'gthread': 0,
'help': 0,
'import_all': [],
'import_mod': [],
'import_some': [[]],
'include': [],
'interact': 1,
'ipythondir': u'/home/greg/.sage/ipython',
'log': 0,
'logfile': '',
'logplay': '',
'magic_docstrings': 0,
'messages': 1,
'multi_line_specials': 1,
'nosep': 0,
'object_info_string_level': 0,
'opts': Struct({'__allownew': True, 'interact': 1, 'profile': ''}),
'pdb': 0,
'pprint': 1,
'profile': '',
'prompt_in1': '${sage_prompt()}: ',
'prompt_in2': "${'.'*len(sage_prompt())}: ",
'prompt_out': '',
'prompts_pad_left': 0,
'pydb': 0,
'pylab': 0,
'pylab_import_all': 1,
'q4thread': 0,
'qthread': 0,
'quick': 0,
'quiet': 0,
'rcfile': 'ipythonrc',
'readline': 1,
'readline_merge_completions': 1,
'readline_omit__names': 2,
'readline_parse_and_bind': ['tab: complete',
'"\\C-l": possible-completions',
'set show-all-if-ambiguous on',
'"\\C-o": tab-insert',
'"\\M-i": " "',
'"\\M-o": "\\d\\d\\d\\d"',
'"\\M-I": "\\d\\d\\d\\d"',
'"\\C-r": reverse-search-history',
'"\\C-s": forward-search-history',
'"\\C-p": history-search-backward',
'"\\C-n": history-search-forward',
'"\\e[A": history-search-backward',
'"\\e[B": history-search-forward',
'"\\C-k": kill-line',
'"\\C-u": unix-line-discard'],
'readline_remove_delims': '-/~',
'screen_length': -1,
'separate_in': '',
'separate_out': '',
'separate_out2': '',
'system_header': 'IPython system call: ',
'system_verbose': 0,
'term_title': 1,
'tk': 0,
'upgrade': 0,
'wildcards_case_sensitive': 1,
'wthread': 0,
'wxversion': '0',
'xmode': 'Context'}
***************************************************************************
Crash traceback:
---------------------------------------------------------------------------
KeyError Python 2.7.2: /usr/bin/python2.7
Sat Nov 19 18:18:27 2011
A problem occured executing Python code. Here is the sequence of function
calls leading up to the error, with the most recent (innermost) call last.
/usr/bin/sage-ipython in <module>()
23 sageCH = CrashHandler(ipy_sage.IP, 'Sage', 'sage-support',
24 'sage-support@googlegroups.com',
25 'http://trac.sagemath.org/sage_trac',
26 'Sage_crash_report.txt',
27 show_crash_traceback=False)
28
29 ipy_sage.IP.set_crash_handler(sageCH)
30
31 import new
32 import os
33
34 old_system = ipy_sage.IP.system
35
36
37
---> 38 sage_commands = os.listdir(os.environ['SAGE_LOCAL']+"/bin/")
global sage_commands = undefined
global os.listdir = <built-in function listdir>
global os.environ = {'SAGE_TESTDIR': '/home/greg/.sage/tmp', 'pd': '/usr/portage', 'USB_DEVFS_PATH': '/dev/bus/usb', 'LESS': '-R -M --shift 5', 'WINDOWPATH': '7', 'DBUS_SESSION_BUS_ADDRESS': 'unix:abstract=/tmp/dbus-MBe1DuZEaJ,guid=0ec9ab8dce2a38e2a246917100000038', 'LESSOPEN': '|lesspipe.sh %s', 'QT_PLUGIN_PATH': '/usr/lib64/kde4/plugins:/home/greg/.kde/lib64/kde4/plugins/:/usr/lib64/kde4/plugins/', 'OPENGL_PROFILE': 'xorg-x11', 'CVS_RSH': 'ssh', 'LOGNAME': 'greg', 'USER': 'greg', 'PATH': '~/dev/public_html/scripts:~/bin:~/research/multi/util:~/research/multi/prep:~/research/multi/src:~/research/multi:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.3:/usr/games/bin:/home/greg/local/bin:/home/greg/bin:/home/greg/sage:/sbin:/usr/local/chimera/bin', 'DM_CONTROL': '/var/run/xdmctl', 'LD_LIBRARY_PATH': '~/lib:', 'KDE_FULL_SESSION': 'true', 'LANG': 'en_US.UTF-8', 'INFOPATH': '/usr/share/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.20.1/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/info:/usr/share/info/emacs-23', 'TERM': 'xterm', 'SHELL': '/bin/bash', 'EPYTHON': 'python2.7', 'XDG_SESSION_COOKIE': 'e13486e8c7d9994b7e6327060000000d-1321504826.201136-1607285756', 'COLORFGBG': '15;0', 'SESSION_MANAGER': 'local/thinkpad:@/tmp/.ICE-unix/7133,unix/thinkpad:/tmp/.ICE-unix/7133', 'IRCSERVER': 'irc.freenode.net', 'DISPLAY': ':0', 'CONFIG_PROTECT_MASK': '/etc/gentoo-release /etc/sandbox.d /etc/grub.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/terminfo /etc/ca-certificates.conf /etc/texmf/web2c /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/revdep-rebuild /etc/splash', 'CHANGE_LOG_EMAIL_ADDRESS': 'dberkholz@gentoo.org', 'IPYTHONRC': 'ipythonrc', 'KDE_SESSION_VERSION': '4', 'WINDOWID': '83886105', 'GSETTINGS_BACKEND': 'gconf', 'EDITOR': '/bin/nano', 'MANPATH': '/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.20.1/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.3/man:/etc/java-config/system-vm/man/', 'PYTHONPATH': '/usr/lib/entropy/lib', 'XCURSOR_THEME': 'default', 'CHANGE_LOG_NAME': 'Donnie Berkholz', 'IRCNICK': 'dberkholz', 'SYSFONT': 'LatArCyrHeb-16', 'HOME': '/home/greg', 'KONSOLE_DBUS_SESSION': '/Sessions/16', 'IPYTHONDIR': '/home/greg/.sage/ipython', 'SANE_CONFIG_DIR': '/etc/sane.d', 'CUR': '/home/greg', 'PROFILEHOME': '', 'XDM_MANAGED': 'method=classic', 'KDE_SESSION_UID': '1000', 'KONSOLE_DBUS_SERVICE': ':1.77', 'GCC_SPECS': '', 'PRELINK_PATH_MASK': '/usr/lib64/libfreebl3.so:/usr/lib64/libnssdbm3.so:/usr/lib64/libsoftokn3.so', 'GTK2_RC_FILES': '/etc/gtk-2.0/gtkrc:/home/greg/.gtkrc-2.0:/home/greg/.gtkrc-2.0-kde4:/home/greg/.kde/share/config/gtkrc-2.0', 'XDG_DATA_DIRS': '/usr/local/share:/usr/share', '_': '/usr/bin/sage-ipython', 'LC_ALL': 'en_US.utf8', 'GS_LIB': '/home/greg/.fonts', 'SHELL_SESSION_ID': '941b73a032644000ae1423922f6de139', 'IRCNAME': 'Donnie Berkholz', 'JDK_HOME': '/etc/java-config-2/current-system-vm', 'DESKTOP_SESSION': 'default', 'JAVA_HOME': '/etc/java-config-2/current-system-vm', 'XDG_CONFIG_DIRS': '/etc/xdg', 'ECHANGELOG_USER': 'Donnie Berkholz <dberkholz@gentoo.org>;', 'JAVAC': '/etc/java-config-2/current-system-vm/bin/javac', 'ANT_HOME': '/usr/share/ant', 'GDK_USE_XFT': '1', 'OLDPWD': '/home/greg', 'SAGE_SERVER': 'http://www.sagemath.org/', 'R_HOME': '/usr/lib64/R', 'LANGUAGE': '', 'CONFIG_PROTECT': '/etc/entropy /usr/share/gnupg/qualified.txt /var/lib/hsqldb /usr/share/config /usr/share/openvpn/easy-rsa /usr/share/themes/oxygen-gtk/gtk-2.0', 'SHLVL': '4', 'PWD': '/bin', 'GIT_COMMITTER_EMAIL': 'dberkholz@gentoo.org', 'GTK_RC_FILES': '/etc/gtk/gtkrc:/home/greg/.gtkrc:/home/greg/.kde/share/config/gtkrc', 'HERDS': '/usr/local/share/gentoo/misc/herds.xml', 'DOT_SAGE': '/home/greg/.sage', 'LS_COLORS': 'rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:', 'PAGER': '/usr/bin/less', 'SAGE_STARTUP_FILE': '/home/greg/.sage/init.sage', 'KDE_MULTIHEAD': 'false'}
39 DARWIN_SYSTEM = os.uname()[0]=='Darwin'
40
41 def sage_system(self, cmd):
42 if cmd in sage_commands:
43 old_system(cmd)
44 else:
45 libraries = 'LD_LIBRARY_PATH=$$SAGE_ORIG_LD_LIBRARY_PATH;'
46 if DARWIN_SYSTEM:
47 libraries += 'DYLD_LIBRARY_PATH=$$SAGE_ORIG_DYLD_LIBRARY_PATH;'
48 old_system(libraries+cmd)
49
50 ipy_sage.IP.system = new.instancemethod(sage_system, ipy_sage.IP, IPython.iplib.InteractiveShell)
51
52 ipy_sage.mainloop(sys_exit=1, banner='')
53
/usr/lib64/python2.7/UserDict.pyc in __getitem__(self={'SAGE_TESTDIR': '/home/greg/.sage/tmp', 'pd': '.../greg/.sage/init.sage', 'KDE_MULTIHEAD': 'false'}, key='SAGE_LOCAL')
8 if len(kwargs):
9 self.update(kwargs)
10 def __repr__(self): return repr(self.data)
11 def __cmp__(self, dict):
12 if isinstance(dict, UserDict):
13 return cmp(self.data, dict.data)
14 else:
15 return cmp(self.data, dict)
16 __hash__ = None # Avoid Py3k warning
17 def __len__(self): return len(self.data)
18 def __getitem__(self, key):
19 if key in self.data:
20 return self.data[key]
21 if hasattr(self.__class__, "__missing__"):
22 return self.__class__.__missing__(self, key)
---> 23 raise KeyError(key)
global j = undefined
global k = undefined
global S = undefined
global N = undefined
global R = undefined
global s = undefined
global usr = undefined
global lib64 = undefined
global python2 = undefined
global UserDict.pyt = undefined
global has_key = undefined
global c = undefined
global K = undefined
global d = undefined
global r = undefined
global n = undefined
global t = undefined
global r4 = undefined
global n_ = undefined
global i = undefined
global sY = undefined
global rl = undefined
global x = undefined
global D = undefined
global qy = undefined
global Wt = undefined
global NR = undefined
global typeR = undefined
global kt = undefined
global v = undefined
global UserDict.pyR.s = undefined
global C = undefined
global failobj = undefined
global get = undefined
global setdefault = undefined
global G = undefined
global pop = undefined
global args = undefined
global UserDict.pyR = undefined
global B = undefined
global popitem = undefined
global __contains__F = undefined
global q = undefined
global W = undefined
global clst = undefined
global iterablet = undefined
global valuet = undefined
global dR = undefined
global fromkeysH = undefined
global __name__t = undefined
global __module__R = undefined
global __hash__R = undefined
global classmethodR0 = undefined
global s2 = undefined
global IterableUserDictc = undefined
global e = undefined
global Z = undefined
global RS = undefined
global iterR = undefined
global __iter__P = undefined
global R1 = undefined
global R2 = undefined
global R7 = undefined
global UserDict.pyR5 = undefined
global O = undefined
global Nt = undefined
global DictMixinc = undefined
global V = undefined
global Wd = undefined
global SXt = undefined
global Falset = undefined
global True = undefined
global f = undefined
global p = undefined
global _R = undefined
global w = undefined
global listR = undefined
global y = undefined
global s.y = undefined
global SWn = undefined
global X = undefined
global default = undefined
global sp = undefined
global r2 = undefined
global Wn = undefined
global rd = undefined
global Ni = undefined
global expected = undefined
global at = undefined
global most = undefined
global arguments = undefined
global got = undefined
global TypeErrorR = undefined
global R.s = undefined
global sJ = undefined
global r8 = undefined
global Ns = undefined
global container = undefined
global empty = undefined
global nextt = undefined
global StopIterationR = undefined
global rH = undefined
global WnX = undefined
global xF = undefined
global qd = undefined
global otherR = undefined
global SXd = undefined
global sM = undefined
global St = undefined
global R8 = undefined
global RA = undefined
global UserDict.pyR8 = undefined
global __doc__R = undefined
global R5 = undefined
global _abcollt = undefined
global MutableMappingt = undefined
global registerR8 = undefined
global module = undefined
global L = undefined
24 def __setitem__(self, key, item): self.data[key] = item
25 def __delitem__(self, key): del self.data[key]
26 def clear(self): self.data.clear()
27 def copy(self):
28 if self.__class__ is UserDict:
29 return UserDict(self.data.copy())
30 import copy
31 data = self.data
32 try:
33 self.data = {}
34 c = copy.copy(self)
35 finally:
36 self.data = data
37 c.update(self)
38 return c
KeyError: 'SAGE_LOCAL'
***************************************************************************
History of session input:
*** Last line of input (may not be in above history):
^ permalink raw reply [flat|nested] 3+ messages in thread* Re: [gentoo-science] SAGE_LOCAL issues
2011-11-19 23:20 [gentoo-science] SAGE_LOCAL issues Greg Laun
@ 2011-11-20 5:31 ` fbissey
2011-11-20 16:23 ` Greg Laun
0 siblings, 1 reply; 3+ messages in thread
From: fbissey @ 2011-11-20 5:31 UTC (permalink / raw
To: gentoo-science
Quoting Greg Laun <greg.laun@gmail.com>:
> Hi,
>
> I just emerged sage from sage-on-gentoo under sabayon. When I try to
> start sage, I get many error messages, which seem to point to
> SAGE_LOCAL being set to / instead
> of /usr. I have attached the crash report.
>
> Can anybody help me with this? Thanks.
>
Hi Greg,
At the end of sage-baselayout you have the following message:
einfo "${PN} has installed a file into /etc/env.d - if you"
einfo "have installed it for the very first time update your
environment"
einfo "with:"
einfo ""
einfo " env-update && source /etc/profile"
einfo ""
einfo "or logoff and logon to your shell, otherwise Sage will fail to
start"
Did you do that before starting sage?
Failing that send us the output of
printenv | grep SAGE
Francois
^ permalink raw reply [flat|nested] 3+ messages in thread* Re: [gentoo-science] SAGE_LOCAL issues
2011-11-20 5:31 ` fbissey
@ 2011-11-20 16:23 ` Greg Laun
0 siblings, 0 replies; 3+ messages in thread
From: Greg Laun @ 2011-11-20 16:23 UTC (permalink / raw
To: gentoo-science
You are right, thank you. Running env-update && source /etc/profile fixed the problem.
On Sun, Nov 20, 2011 at 06:31:41PM +1300, fbissey@slingshot.co.nz wrote:
> Date: Sun, 20 Nov 2011 18:31:41 +1300
> From: fbissey@slingshot.co.nz
> To: gentoo-science@lists.gentoo.org
> Subject: Re: [gentoo-science] SAGE_LOCAL issues
> Reply-To: gentoo-science@lists.gentoo.org
>
> Quoting Greg Laun <greg.laun@gmail.com>:
>
> > Hi,
> >
> > I just emerged sage from sage-on-gentoo under sabayon. When I try to
> > start sage, I get many error messages, which seem to point to
> > SAGE_LOCAL being set to / instead
> > of /usr. I have attached the crash report.
> >
> > Can anybody help me with this? Thanks.
> >
> Hi Greg,
>
> At the end of sage-baselayout you have the following message:
> einfo "${PN} has installed a file into /etc/env.d - if you"
> einfo "have installed it for the very first time update your
> environment"
> einfo "with:"
> einfo ""
> einfo " env-update && source /etc/profile"
> einfo ""
> einfo "or logoff and logon to your shell, otherwise Sage will fail to
> start"
>
> Did you do that before starting sage?
> Failing that send us the output of
> printenv | grep SAGE
>
> Francois
>
>
^ permalink raw reply [flat|nested] 3+ messages in thread
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2011-11-19 23:20 [gentoo-science] SAGE_LOCAL issues Greg Laun
2011-11-20 5:31 ` fbissey
2011-11-20 16:23 ` Greg Laun
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