From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1RD0YG-0002k0-4M for garchives@archives.gentoo.org; Sun, 09 Oct 2011 21:04:52 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 6937F21C23E; Sun, 9 Oct 2011 21:04:42 +0000 (UTC) Received: from mxi2.callplus.net.nz (mx194.callplus.net.nz [202.180.66.194]) by pigeon.gentoo.org (Postfix) with ESMTP id 53BFB21C253 for ; Sun, 9 Oct 2011 21:04:33 +0000 (UTC) X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: AkMGADgLkk7KtEIE/2dsb2JhbAA6CIR1lD6PaoFTAQEEASNbCwgDGgIfBwICVxmHfgelEJBLA4EsgmuCGIEUBKVe X-IronPort-AV: E=Sophos;i="4.68,513,1312113600"; d="scan'208";a="218461415" Received: from wmsrv3.tranzpeer.net (HELO localhost) ([202.180.66.4]) by ismtp2.tranzpeer.net with ESMTP; 10 Oct 2011 10:04:31 +1300 Received: from 202.36.179.68 ([202.36.179.68]) by webmail.slingshot.co.nz (Horde) with HTTP for ; Mon, 10 Oct 2011 09:59:08 +1300 Message-ID: <20111010095908.zksk8gw4gcckswoc@webmail.slingshot.co.nz> Date: Mon, 10 Oct 2011 09:59:08 +1300 From: fbissey@slingshot.co.nz To: gentoo-science@lists.gentoo.org Subject: Re: [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1 References: <20111009180544.f6r9vdhta88wkw88@webmail.uni-potsdam.de> In-Reply-To: <20111009180544.f6r9vdhta88wkw88@webmail.uni-potsdam.de> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: text/plain; charset="UTF-8"; format="flowed" Content-Disposition: inline Content-Transfer-Encoding: 7bit User-Agent: Internet Messaging Program (IMP) 4.0-cvs X-Originating-IP: 202.36.179.68 X-Archives-Salt: X-Archives-Hash: 805d6639bad98b44bba01add22141e95 Quoting rose@rz.uni-potsdam.de: > The installation of scipy-0.9.0-r2 is blocked by sage-4.7.1-r2, > because 'emerge scipy' fails if numpy-1.5.1 and not numpy-1.6.1-r1 is > installed. But the installation of numpy-1.6.1-r1 is blocked by > sage-4.7.1-r2: > > root@impala:/root(2)# emerge -pvuDN world > These are the packages that would be merged, in order: > Calculating dependencies... done! > [ebuild U ] sci-libs/scipy-0.9.0-r2 [0.9.0-r1] USE="doc -umfpack" 0 kB > Total: 1 package (1 upgrade), Size of downloads: 0 kB > WARNING: One or more updates have been skipped due to a dependency conflict: > dev-python/numpy:0 > (dev-python/numpy-1.6.1-r1::gentoo, ebuild scheduled for merge) > conflicts with > ~dev-python/numpy-1.5.1 required by > (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed) > dev-python/pexpect:0 > (dev-python/pexpect-2.4-r1::sage-on-gentoo, ebuild scheduled for > merge) conflicts with > ~dev-python/pexpect-2.0 required by > (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed) > > The restriction to numpy-1.5.1 was motivated with missing clapack_* > symbols corresonding to Bug > https://bugs.gentoo.org/show_bug.cgi?id=371099. > > But this issue seems to be solved now, comment 40 to Bug 371099. Indeed I don't understand why numpy-1.5.1 was locked out by this update. This version of numpy never had a problem and could have been switched to the new style of declaration without problem. Upgrading sage to use numpy-1.6.x is stalled at the moment so we need numpy-1.5.1 for the time being. If problems persist I'll add a version of scipy in the sage-on-gentoo overlay I don't like doing this but that's the only thing that I have control on. Francois