* [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1
@ 2011-10-09 16:05 rose
2011-10-09 20:59 ` fbissey
2011-10-09 22:27 ` fbissey
0 siblings, 2 replies; 6+ messages in thread
From: rose @ 2011-10-09 16:05 UTC (permalink / raw
To: gentoo-science
The installation of scipy-0.9.0-r2 is blocked by sage-4.7.1-r2,
because 'emerge scipy' fails if numpy-1.5.1 and not numpy-1.6.1-r1 is
installed. But the installation of numpy-1.6.1-r1 is blocked by
sage-4.7.1-r2:
root@impala:/root(2)# emerge -pvuDN world
These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild U ] sci-libs/scipy-0.9.0-r2 [0.9.0-r1] USE="doc -umfpack" 0 kB
Total: 1 package (1 upgrade), Size of downloads: 0 kB
WARNING: One or more updates have been skipped due to a dependency conflict:
dev-python/numpy:0
(dev-python/numpy-1.6.1-r1::gentoo, ebuild scheduled for merge)
conflicts with
~dev-python/numpy-1.5.1 required by
(sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
dev-python/pexpect:0
(dev-python/pexpect-2.4-r1::sage-on-gentoo, ebuild scheduled for
merge) conflicts with
~dev-python/pexpect-2.0 required by
(sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
The restriction to numpy-1.5.1 was motivated with missing clapack_*
symbols corresonding to Bug
https://bugs.gentoo.org/show_bug.cgi?id=371099.
But this issue seems to be solved now, comment 40 to Bug 371099.
^ permalink raw reply [flat|nested] 6+ messages in thread* Re: [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1
2011-10-09 16:05 [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1 rose
@ 2011-10-09 20:59 ` fbissey
2011-10-09 22:27 ` fbissey
1 sibling, 0 replies; 6+ messages in thread
From: fbissey @ 2011-10-09 20:59 UTC (permalink / raw
To: gentoo-science
Quoting rose@rz.uni-potsdam.de:
> The installation of scipy-0.9.0-r2 is blocked by sage-4.7.1-r2,
> because 'emerge scipy' fails if numpy-1.5.1 and not numpy-1.6.1-r1 is
> installed. But the installation of numpy-1.6.1-r1 is blocked by
> sage-4.7.1-r2:
>
> root@impala:/root(2)# emerge -pvuDN world
> These are the packages that would be merged, in order:
> Calculating dependencies... done!
> [ebuild U ] sci-libs/scipy-0.9.0-r2 [0.9.0-r1] USE="doc -umfpack" 0 kB
> Total: 1 package (1 upgrade), Size of downloads: 0 kB
> WARNING: One or more updates have been skipped due to a dependency conflict:
> dev-python/numpy:0
> (dev-python/numpy-1.6.1-r1::gentoo, ebuild scheduled for merge)
> conflicts with
> ~dev-python/numpy-1.5.1 required by
> (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
> dev-python/pexpect:0
> (dev-python/pexpect-2.4-r1::sage-on-gentoo, ebuild scheduled for
> merge) conflicts with
> ~dev-python/pexpect-2.0 required by
> (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
>
> The restriction to numpy-1.5.1 was motivated with missing clapack_*
> symbols corresonding to Bug
> https://bugs.gentoo.org/show_bug.cgi?id=371099.
>
> But this issue seems to be solved now, comment 40 to Bug 371099.
Indeed I don't understand why numpy-1.5.1 was locked out by this update. This
version of numpy never had a problem and could have been switched to the new
style of declaration without problem.
Upgrading sage to use numpy-1.6.x is stalled at the moment so we need
numpy-1.5.1 for the time being. If problems persist I'll add a version
of scipy
in the sage-on-gentoo overlay I don't like doing this but that's the
only thing
that I have control on.
Francois
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1
2011-10-09 16:05 [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1 rose
2011-10-09 20:59 ` fbissey
@ 2011-10-09 22:27 ` fbissey
2011-10-09 23:21 ` rose
1 sibling, 1 reply; 6+ messages in thread
From: fbissey @ 2011-10-09 22:27 UTC (permalink / raw
To: gentoo-science
Quoting rose@rz.uni-potsdam.de:
> The installation of scipy-0.9.0-r2 is blocked by sage-4.7.1-r2,
> because 'emerge scipy' fails if numpy-1.5.1 and not numpy-1.6.1-r1 is
> installed. But the installation of numpy-1.6.1-r1 is blocked by
> sage-4.7.1-r2:
>
> root@impala:/root(2)# emerge -pvuDN world
> These are the packages that would be merged, in order:
> Calculating dependencies... done!
> [ebuild U ] sci-libs/scipy-0.9.0-r2 [0.9.0-r1] USE="doc -umfpack" 0 kB
> Total: 1 package (1 upgrade), Size of downloads: 0 kB
> WARNING: One or more updates have been skipped due to a dependency conflict:
> dev-python/numpy:0
> (dev-python/numpy-1.6.1-r1::gentoo, ebuild scheduled for merge)
> conflicts with
> ~dev-python/numpy-1.5.1 required by
> (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
> dev-python/pexpect:0
> (dev-python/pexpect-2.4-r1::sage-on-gentoo, ebuild scheduled for
> merge) conflicts with
> ~dev-python/pexpect-2.0 required by
> (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
>
> The restriction to numpy-1.5.1 was motivated with missing clapack_*
> symbols corresonding to Bug
> https://bugs.gentoo.org/show_bug.cgi?id=371099.
>
> But this issue seems to be solved now, comment 40 to Bug 371099.
I am not sure I understand your email fully. scipy-0.9.0-r2 doesn't require
numpy-1.6.1.
Indeed you cannot upgrade numpy to 1.6.1 but that doesn't prevent the
merging of
anything. It is just a version constraint. It is unfortunate but that's
the way
it is.
Do you absolutely need numpy-1.6 for something else than sage?
Francois
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1
2011-10-09 22:27 ` fbissey
@ 2011-10-09 23:21 ` rose
2011-10-09 23:25 ` fbissey
0 siblings, 1 reply; 6+ messages in thread
From: rose @ 2011-10-09 23:21 UTC (permalink / raw
To: gentoo-science
Quoting fbissey@slingshot.co.nz:
> Quoting rose@rz.uni-potsdam.de:
>
>> The installation of scipy-0.9.0-r2 is blocked by sage-4.7.1-r2,
>> because 'emerge scipy' fails if numpy-1.5.1 and not numpy-1.6.1-r1 is
>> installed. But the installation of numpy-1.6.1-r1 is blocked by
>> sage-4.7.1-r2:
>>
>> root@impala:/root(2)# emerge -pvuDN world
>> These are the packages that would be merged, in order:
>> Calculating dependencies... done!
>> [ebuild U ] sci-libs/scipy-0.9.0-r2 [0.9.0-r1] USE="doc -umfpack" 0 kB
>> Total: 1 package (1 upgrade), Size of downloads: 0 kB
>> WARNING: One or more updates have been skipped due to a dependency conflict:
>> dev-python/numpy:0
>> (dev-python/numpy-1.6.1-r1::gentoo, ebuild scheduled for merge)
>> conflicts with
>> ~dev-python/numpy-1.5.1 required by
>> (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
>> dev-python/pexpect:0
>> (dev-python/pexpect-2.4-r1::sage-on-gentoo, ebuild scheduled for
>> merge) conflicts with
>> ~dev-python/pexpect-2.0 required by
>> (sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
>>
>> The restriction to numpy-1.5.1 was motivated with missing clapack_*
>> symbols corresonding to Bug
>> https://bugs.gentoo.org/show_bug.cgi?id=371099.
>>
>> But this issue seems to be solved now, comment 40 to Bug 371099.
>
> I am not sure I understand your email fully. scipy-0.9.0-r2 doesn't require
> numpy-1.6.1.
> Indeed you cannot upgrade numpy to 1.6.1 but that doesn't prevent the
> merging of
> anything. It is just a version constraint. It is unfortunate but that's
> the way
> it is.
>
> Do you absolutely need numpy-1.6 for something else than sage?
>
> Francois
Hi Francois,
it seems, that scipy-0.9.0-r2 fails to emerge if numpy-1.5.1 is
installed but it is emerged if numpy-1.6.1-r1, compare Bug 386269
https://bugs.gentoo.org/show_bug.cgi?id=386269 .
Regards Juergen
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1
2011-10-09 23:21 ` rose
@ 2011-10-09 23:25 ` fbissey
2011-10-10 0:00 ` Juergen Rose
0 siblings, 1 reply; 6+ messages in thread
From: fbissey @ 2011-10-09 23:25 UTC (permalink / raw
To: gentoo-science
Quoting rose@rz.uni-potsdam.de:
>>
>> Do you absolutely need numpy-1.6 for something else than sage?
>>
>> Francois
>
> Hi Francois,
>
> it seems, that scipy-0.9.0-r2 fails to emerge if numpy-1.5.1 is
> installed but it is emerged if numpy-1.6.1-r1, compare Bug 386269
> https://bugs.gentoo.org/show_bug.cgi?id=386269 .
>
> Regards Juergen
Hi Juergen,
It works for me here so let's try to get to the bottom of this.
Do you have lapack enabled in numpy?
Francois
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1
2011-10-09 23:25 ` fbissey
@ 2011-10-10 0:00 ` Juergen Rose
0 siblings, 0 replies; 6+ messages in thread
From: Juergen Rose @ 2011-10-10 0:00 UTC (permalink / raw
To: gentoo-science
On Mon, 2011-10-10 at 12:25 +1300, fbissey@slingshot.co.nz wrote:
> Quoting rose@rz.uni-potsdam.de:
> >>
> >> Do you absolutely need numpy-1.6 for something else than sage?
> >>
> >> Francois
> >
> > Hi Francois,
> >
> > it seems, that scipy-0.9.0-r2 fails to emerge if numpy-1.5.1 is
> > installed but it is emerged if numpy-1.6.1-r1, compare Bug 386269
> > https://bugs.gentoo.org/show_bug.cgi?id=386269 .
> >
> > Regards Juergen
> Hi Juergen,
>
> It works for me here so let's try to get to the bottom of this.
> Do you have lapack enabled in numpy?
>
> Francois
Yes, I have. at the system with installed sage:
root@caiman:/root(28)# emerge -pvD numpy
These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild R ] dev-python/numpy-1.5.1 USE="doc lapack -test" 0 kB
Total: 1 package (1 reinstall), Size of downloads: 0 kB
WARNING: One or more updates have been skipped due to a dependency
conflict:
dev-python/numpy:0
(dev-python/numpy-1.6.1-r1::gentoo, ebuild scheduled for merge)
conflicts with
~dev-python/numpy-1.5.1 required by
(sci-mathematics/sage-4.7.1-r2::sage-on-gentoo, installed)
and on the system without sage:
root@condor:/root(13)# emerge -pvD numpy
These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild R ] dev-python/numpy-1.6.1-r1 USE="doc lapack -test" 0 kB
^ permalink raw reply [flat|nested] 6+ messages in thread
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2011-10-09 16:05 [gentoo-science] sci-mathematics/sage-4.7.1-r2 still circumvents the installation of numpy > numpy-1.5.1 rose
2011-10-09 20:59 ` fbissey
2011-10-09 22:27 ` fbissey
2011-10-09 23:21 ` rose
2011-10-09 23:25 ` fbissey
2011-10-10 0:00 ` Juergen Rose
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