* [gentoo-science] 'emerge -vuND sage' fails due to issues with masking.
@ 2011-08-22 9:29 rose
2011-08-22 9:44 ` Christopher Schwan
0 siblings, 1 reply; 3+ messages in thread
From: rose @ 2011-08-22 9:29 UTC (permalink / raw
To: gentoo-science
'emerge -vuND sage' now fails for me with:
root@caiman:/root(61)# emerge -vuND sage
These are the packages that would be merged, in order:
Calculating dependencies... done!
[ebuild U #] sci-mathematics/sage-baselayout-4.7.2_alpha1 [4.7.1]
USE="X -debug -testsuite" 1,111 kB [1]
[ebuild U ] sci-mathematics/sage-extcode-4.7.2_alpha1 [4.7.1]
11,894 kB [1]
[ebuild N ] sci-mathematics/pari-data-20110727 45,753 kB [0]
[ebuild UD ] dev-python/pexpect-2.0 [2.4-r1] USE="(-doc%*)
(-examples%*)" 0 kB [1]
[ebuild UD ] dev-python/numpy-1.5.1 [1.6.1] USE="doc lapack -test"
0 kB [0]
[ebuild U ] sci-mathematics/sage-notebook-0.8.20 [0.8.19]
USE="java" 18,442 kB [1]
[ebuild N ] sci-mathematics/pari-2.5.0-r3 USE="X data doc fltk
gmp" 2,651 kB [0]
[ebuild N ] dev-python/mpmath-0.17 USE="doc examples gmp
-matplotlib -test" 0 kB [0]
[ebuild N ] sci-libs/flint-1.6 USE="doc ntl -test" 0 kB [1]
[ebuild N #] sci-mathematics/sage-doc-4.7.2_alpha1 USE="pdf
-html" 53,162 kB [1]
[ebuild N ] sci-mathematics/eclib-20100711 USE="-pari24" 0 kB [1]
[ebuild N #] sci-mathematics/lcalc-1.23-r4 USE="pari" 0 kB [1]
[ebuild N ] dev-python/sympy-0.7.1 USE="doc examples gtk latex
opengl pdf png texmacs -imaging -ipython -mathml -test" 0 kB [0]
[ebuild N ] sci-mathematics/sympow-1.018.1_p8-r1 USE="-pari24" 0 kB [1]
[ebuild N ] sci-mathematics/genus2reduction-0.3_p8-r1 0 kB [1]
[ebuild N ] dev-python/networkx-1.2 USE="examples" 0 kB [1]
[ebuild N ] dev-tex/sage-latex-2.2.5-r2 USE="examples" 0 kB [1]
[ebuild N ] sci-mathematics/polybori-0.7.1 USE="doc gd sage" 0 kB [1]
[ebuild N #] sci-mathematics/sage-clib-4.7.2_alpha1 0 kB [1]
[ebuild N #] sci-mathematics/sage-4.7.2_alpha1 USE="examples
latex -mpc -testsuite" 0 kB [1]
Total: 20 packages (3 upgrades, 2 downgrades, 15 new), Size of
downloads: 133,011 kB
Portage tree and overlays:
[0] /usr/portage
[1] /var/lib/layman/sage-on-gentoo
The following mask changes are necessary to proceed:
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /etc/portage/package.mask:
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/lcalc-1.23-r4
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-clib-4.7.2_alpha1
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-baselayout-4.7.2_alpha1
#required by sage (argument)
# /etc/portage/package.mask:
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
#required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-4.7.2_alpha1
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /etc/portage/package.mask:
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
#required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-doc-4.7.2_alpha1
But I think that I have just set this requested masking
/etc/portage/package.maks:
root@caiman:/root(62)# cat /etc/portage/package.mask
> =dev-java/jgraphx-1.4.1.1
> =sci-libs/sprng-4.0
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/lcalc-1.23-r4
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-clib-4.7.2_alpha1
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-baselayout-4.7.2_alpha1
#required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-4.7.2_alpha1
#required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
# /var/lib/layman/sage-on-gentoo/profiles/package.mask:
# preparing 4.7.2
> =sci-mathematics/sage-doc-4.7.2_alpha1
Any hint is apprecieated.
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: [gentoo-science] 'emerge -vuND sage' fails due to issues with masking.
2011-08-22 9:29 [gentoo-science] 'emerge -vuND sage' fails due to issues with masking rose
@ 2011-08-22 9:44 ` Christopher Schwan
2011-08-22 10:30 ` rose
0 siblings, 1 reply; 3+ messages in thread
From: Christopher Schwan @ 2011-08-22 9:44 UTC (permalink / raw
To: gentoo-science
On Monday 22 August 2011 11:29:34 rose@rz.uni-potsdam.de wrote:
> 'emerge -vuND sage' now fails for me with:
>
> root@caiman:/root(61)# emerge -vuND sage
>
> These are the packages that would be merged, in order:
>
> Calculating dependencies... done!
> [ebuild U #] sci-mathematics/sage-baselayout-4.7.2_alpha1 [4.7.1]
> USE="X -debug -testsuite" 1,111 kB [1]
> [ebuild U ] sci-mathematics/sage-extcode-4.7.2_alpha1 [4.7.1]
> 11,894 kB [1]
> [ebuild N ] sci-mathematics/pari-data-20110727 45,753 kB [0]
> [ebuild UD ] dev-python/pexpect-2.0 [2.4-r1] USE="(-doc%*)
> (-examples%*)" 0 kB [1]
> [ebuild UD ] dev-python/numpy-1.5.1 [1.6.1] USE="doc lapack -test"
> 0 kB [0]
> [ebuild U ] sci-mathematics/sage-notebook-0.8.20 [0.8.19]
> USE="java" 18,442 kB [1]
> [ebuild N ] sci-mathematics/pari-2.5.0-r3 USE="X data doc fltk
> gmp" 2,651 kB [0]
> [ebuild N ] dev-python/mpmath-0.17 USE="doc examples gmp
> -matplotlib -test" 0 kB [0]
> [ebuild N ] sci-libs/flint-1.6 USE="doc ntl -test" 0 kB [1]
> [ebuild N #] sci-mathematics/sage-doc-4.7.2_alpha1 USE="pdf
> -html" 53,162 kB [1]
> [ebuild N ] sci-mathematics/eclib-20100711 USE="-pari24" 0 kB [1]
> [ebuild N #] sci-mathematics/lcalc-1.23-r4 USE="pari" 0 kB [1]
> [ebuild N ] dev-python/sympy-0.7.1 USE="doc examples gtk latex
> opengl pdf png texmacs -imaging -ipython -mathml -test" 0 kB [0]
> [ebuild N ] sci-mathematics/sympow-1.018.1_p8-r1 USE="-pari24" 0 kB
> [1] [ebuild N ] sci-mathematics/genus2reduction-0.3_p8-r1 0 kB [1]
> [ebuild N ] dev-python/networkx-1.2 USE="examples" 0 kB [1]
> [ebuild N ] dev-tex/sage-latex-2.2.5-r2 USE="examples" 0 kB [1]
> [ebuild N ] sci-mathematics/polybori-0.7.1 USE="doc gd sage" 0 kB [1]
> [ebuild N #] sci-mathematics/sage-clib-4.7.2_alpha1 0 kB [1]
> [ebuild N #] sci-mathematics/sage-4.7.2_alpha1 USE="examples
> latex -mpc -testsuite" 0 kB [1]
>
> Total: 20 packages (3 upgrades, 2 downgrades, 15 new), Size of
> downloads: 133,011 kB
> Portage tree and overlays:
> [0] /usr/portage
> [1] /var/lib/layman/sage-on-gentoo
>
> The following mask changes are necessary to proceed:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /etc/portage/package.mask:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/lcalc-1.23-r4
>
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-clib-4.7.2_alpha1
>
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-baselayout-4.7.2_alpha1
>
> #required by sage (argument)
> # /etc/portage/package.mask:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-4.7.2_alpha1
>
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /etc/portage/package.mask:
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-doc-4.7.2_alpha1
>
> But I think that I have just set this requested masking
> /etc/portage/package.maks:
>
>
> root@caiman:/root(62)# cat /etc/portage/package.mask
>
> > =dev-java/jgraphx-1.4.1.1
> > =sci-libs/sprng-4.0
>
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/lcalc-1.23-r4
>
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-clib-4.7.2_alpha1
>
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-baselayout-4.7.2_alpha1
>
> #required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-4.7.2_alpha1
>
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
> # preparing 4.7.2
>
> > =sci-mathematics/sage-doc-4.7.2_alpha1
>
> Any hint is apprecieated.
Hi,
I dont know why portage wants to install 4.7.2_alpha1 but it should not - the
latest stable is 4.7.1. Refresh your overlay (I just made a small change) and
try again. Also, do not forget to compile sage-baselayout and sage itself with
USE=testsuite because 4.7.1 is broken without (see other thread on the list).
If it does not work, send me a list of already installed sage packages and
their corresponding versions. If you are using eix, type
eix -I sage-
to get that list.
Cheers,
Christopher
^ permalink raw reply [flat|nested] 3+ messages in thread
* Re: [gentoo-science] 'emerge -vuND sage' fails due to issues with masking.
2011-08-22 9:44 ` Christopher Schwan
@ 2011-08-22 10:30 ` rose
0 siblings, 0 replies; 3+ messages in thread
From: rose @ 2011-08-22 10:30 UTC (permalink / raw
To: gentoo-science
Quoting Christopher Schwan <cschwan@students.uni-mainz.de>:
> On Monday 22 August 2011 11:29:34 rose@rz.uni-potsdam.de wrote:
>> 'emerge -vuND sage' now fails for me with:
>>
>> root@caiman:/root(61)# emerge -vuND sage
>>
>> These are the packages that would be merged, in order:
>>
>> Calculating dependencies... done!
>> [ebuild U #] sci-mathematics/sage-baselayout-4.7.2_alpha1 [4.7.1]
>>
...
> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
>> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
>> # preparing 4.7.2
>>
>> > =sci-mathematics/sage-doc-4.7.2_alpha1
>>
>> But I think that I have just set this requested masking
>> /etc/portage/package.maks:
>>
...
>> #required by sage (argument)
>> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
>> # preparing 4.7.2
>>
>> > =sci-mathematics/sage-4.7.2_alpha1
>>
>> #required by sci-mathematics/sage-4.7.2_alpha1, required by sage (argument)
>> # /var/lib/layman/sage-on-gentoo/profiles/package.mask:
>> # preparing 4.7.2
>>
>> > =sci-mathematics/sage-doc-4.7.2_alpha1
>>
>> Any hint is apprecieated.
>
> Hi,
>
> I dont know why portage wants to install 4.7.2_alpha1 but it should not - the
> latest stable is 4.7.1. Refresh your overlay (I just made a small change) and
> try again. Also, do not forget to compile sage-baselayout and sage
> itself with
> USE=testsuite because 4.7.1 is broken without (see other thread on the list).
> If it does not work, send me a list of already installed sage packages and
> their corresponding versions. If you are using eix, type
>
> eix -I sage-
>
> to get that list.
>
> Cheers,
> Christopher
Thanks Christopher,
now the issues with 4.7.2_alpha1 and masking disappeared, I came three
packages further. Now the filesize of
/usr/portage_caiman/distfiles/elldata.tgz does not match recorded size:
>>> Emerging (4 of 17) sci-mathematics/pari-2.4.3-r1 from sage-on-gentoo
* pari-2.4.3.alpha.tar.gz RMD160 SHA1 SHA256 size ;-) ...
[ ok ]
>>> Downloading 'http://pari.math.u-bordeaux.fr/pub/pari/packages/elldata.tgz'
--2011-08-22 12:06:26--
http://pari.math.u-bordeaux.fr/pub/pari/packages/elldata.tgz
Resolving pari.math.u-bordeaux.fr (pari.math.u-bordeaux.fr)... 147.210.16.88
Connecting to pari.math.u-bordeaux.fr
(pari.math.u-bordeaux.fr)|147.210.16.88|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 17548733 (17M) [application/x-gzip]
Saving to: `/usr/portage_caiman/distfiles/elldata.tgz'
100%[====================================================================================================================================================>] 17,548,733 179K/s in
96s
2011-08-22 12:08:02 (178 KB/s) -
`/usr/portage_caiman/distfiles/elldata.tgz' saved [17548733/17548733]
('Filesize does not match recorded size', 17548733, 18719947)
!!! Fetched file: elldata.tgz VERIFY FAILED!
!!! Reason: Filesize does not match recorded size
!!! Got: 17548733
!!! Expected: 18719947
Can you help again?
Regards Juergen
^ permalink raw reply [flat|nested] 3+ messages in thread
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2011-08-22 9:29 [gentoo-science] 'emerge -vuND sage' fails due to issues with masking rose
2011-08-22 9:44 ` Christopher Schwan
2011-08-22 10:30 ` rose
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