From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1QVGJi-0004Xo-80 for garchives@archives.gentoo.org; Sat, 11 Jun 2011 05:01:02 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id CADDB1C00C; Sat, 11 Jun 2011 05:00:18 +0000 (UTC) Received: from mx1.d.umn.edu (mx1.d.umn.edu [131.212.109.15]) by pigeon.gentoo.org (Postfix) with ESMTP id 8C3FE1C00C for ; Sat, 11 Jun 2011 05:00:18 +0000 (UTC) Received: from mxr1.d.umn.edu (mxr1.d.umn.edu [131.212.109.92]) by mx1.d.umn.edu (8.13.8/8.13.8) with ESMTP id p5B500NO015308 for ; Sat, 11 Jun 2011 00:00:00 -0500 (CDT) Received: from mxv2.d.umn.edu (mxv2.d.umn.edu [131.212.109.136]) by mxr1.d.umn.edu (8.13.8/8.13.8) with ESMTP id p5B500XI008212 for ; Sat, 11 Jun 2011 00:00:00 -0500 (CDT) Received: from mx9-g.d.umn.edu (mx9-g.d.umn.edu [131.212.109.175]) by mxv2.d.umn.edu (8.13.8/8.13.8) with ESMTP id p5B500Ai020761 for ; Sat, 11 Jun 2011 00:00:00 -0500 (CDT) Received: from mail-iy0-f176.google.com (mail-iy0-f176.google.com [209.85.210.176]) by mx9-g.d.umn.edu (8.13.8/8.13.8) with ESMTP id p5B4wpJa013833 for ; Fri, 10 Jun 2011 23:59:14 -0500 (CDT) Received: by mail-iy0-f176.google.com with SMTP id 1so3881848iym.21 for ; Fri, 10 Jun 2011 21:59:13 -0700 (PDT) Received: by 10.42.161.194 with SMTP id u2mr3527188icx.200.1307768352163; Fri, 10 Jun 2011 21:59:12 -0700 (PDT) Received: from pavilion64.home.lan (67-3-17-152.dlth.qwest.net [67.3.17.152]) by mx.google.com with ESMTPS id gb8sm1666764ibb.43.2011.06.10.21.59.11 (version=TLSv1/SSLv3 cipher=OTHER); Fri, 10 Jun 2011 21:59:12 -0700 (PDT) Date: Fri, 10 Jun 2011 23:58:59 -0500 From: Steven Trogdon To: gentoo-science@lists.gentoo.org Subject: Re: [gentoo-science] sci-libs/scipy-0.9.0-r1 undefined symbol: clapack_sgesv Message-ID: <20110610235859.64e4bb3e@pavilion64.home.lan> In-Reply-To: <201106080807.11438.fbissey@slingshot.co.nz> References: <201106080807.11438.fbissey@slingshot.co.nz> X-Mailer: Claws Mail 3.7.9 (GTK+ 2.22.1; x86_64-pc-linux-gnu) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org Mime-Version: 1.0 Content-Type: multipart/signed; micalg=PGP-SHA1; boundary="Sig_/vygUOX9Rt30PE.+v.sd4bEF"; protocol="application/pgp-signature" X-Virus-Scanned: clamav-milter 0.97 at mxv2.d.umn.edu X-Virus-Status: Clean X-Archives-Salt: X-Archives-Hash: 820b6cc9bb84f9813873ff0036143bf8 --Sig_/vygUOX9Rt30PE.+v.sd4bEF Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable On Wed, 8 Jun 2011 08:07:10 +1200 Francois Bissey wrote: > > EL Tue, 7 Jun 2011 07:33:27 +1200 > >=20 > > Francois Bissey escrigu=C3=A9: > > > I note you are using numpy-1.6.0 I don't if that's linked to that but > > > sage will not work properly with it: > > > http://trac.sagemath.org/sage_trac/ticket/11334 > > > Can you try again with numpy-1.5.1 at least. > >=20 > > I am a bit surprised, but downgrading numpy actually worked. Thanks a > > lot for your help, Francois! Sage-4.7 should depend on ~numpy-1.5.1 > > then, since it already depends on >=3Dnumpy-1.5.1. > >=20 > > > And then what are the outputs of: > > > ldd /usr/lib64/python2.7/site-packages/numpy/core/_dotblas.so > > > ldd /usr/lib64/python2.7/site-packages/numpy/linalg/lapack_lite.so > >=20 > > They link to lapack, blas and cblas, and they didn't change when I > > downgraded numpy. >=20 > I fixed the numpy dependencies in the sage tree. It is still curious that > scipy didn't apparently build properly when using numpy-1.6.0. Someone sh= ould > investigate that. >=20 > Francois >=20 It appears that this issue may arise somewhere in the distutils that's ship= ped with numpy-1.6.0. We'll see. See bug http://bugs.gentoo.org/show_bug.cgi?id=3D371099 Steve --Sig_/vygUOX9Rt30PE.+v.sd4bEF Content-Type: application/pgp-signature; name=signature.asc Content-Disposition: attachment; filename=signature.asc -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.17 (GNU/Linux) iEYEARECAAYFAk3y9hwACgkQSh5h5U6haiGQVgCeKYNKK51tgh9ldT//P3LYGHHD V5QAnRXA6EMO/qCVV2YKaJktz498pvBF =pGLG -----END PGP SIGNATURE----- --Sig_/vygUOX9Rt30PE.+v.sd4bEF--