From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1POWyf-0005K8-SF for garchives@archives.gentoo.org; Fri, 03 Dec 2010 14:51:14 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 696EAE07F7; Fri, 3 Dec 2010 14:50:23 +0000 (UTC) Received: from mta-1.ms.rz.rwth-aachen.de (mta-1.ms.rz.RWTH-Aachen.DE [134.130.7.72]) by pigeon.gentoo.org (Postfix) with ESMTP id 2F430E07F7 for ; Fri, 3 Dec 2010 14:50:22 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-version: 1.0 Content-transfer-encoding: 7BIT Content-type: text/plain; charset=us-ascii Received: from ironport-out-1.rz.rwth-aachen.de ([134.130.5.40]) by mta-1.ms.rz.RWTH-Aachen.de (Sun Java(tm) System Messaging Server 6.3-7.04 (built Sep 26 2008)) with ESMTP id <0LCU00M70X7YFIE0@mta-1.ms.rz.RWTH-Aachen.de> for gentoo-science@lists.gentoo.org; Fri, 03 Dec 2010 15:50:22 +0100 (CET) X-IronPort-AV: E=Sophos;i="4.59,293,1288566000"; d="scan'208";a="83913546" Received: from relay-auth-1.ms.rz.rwth-aachen.de (HELO relay-auth-1) ([134.130.7.78]) by ironport-in-1.rz.rwth-aachen.de with ESMTP; Fri, 03 Dec 2010 15:50:22 +0100 Received: from localhost.localnet ([unknown] [137.226.40.41]) by relay-auth-1.ms.rz.rwth-aachen.de (Sun Java(tm) System Messaging Server 7.0-3.01 64bit (built Dec 9 2008)) with ESMTPA id <0LCU00KDBX7YJ990@relay-auth-1.ms.rz.rwth-aachen.de> for gentoo-science@lists.gentoo.org; Fri, 03 Dec 2010 15:50:22 +0100 (CET) From: Jan Marten Simons Organization: Institut =?utf-8?q?f=C3=BCr?= Kristallographie To: gentoo-science@lists.gentoo.org Subject: [gentoo-science] cctbx version-bump to 2010.09.15.2318? Date: Fri, 03 Dec 2010 15:48:42 +0100 User-Agent: KMail/1.13.5 (Linux/2.6.36-gentoo-r3; KDE/4.4.5; x86_64; ; ) Message-id: <201012031548.42284.marten@xtal.rwth-aachen.de> X-Archives-Salt: ff40540e-31a1-4f2b-8c18-0c8f0d46233c X-Archives-Hash: 0868df7cd844f6a801bbfe752c091746 Hi, I recently found out cctbx has released a new version (see http://cci.lbl.gov/cctbx_build/). I tried to do a version-bump with the ebuild, but as some code changed some patches don't apply anymore. I found out, tst-server.py.patch can be dropped, as the code it tries to correct has been removed upstream. Aditionally I found a bug: /usr/lib64/cctbx/cctbx_build/bin/cctbx.python is refering to paths in /var/tmp/portage, which don't exist post-install and therefore calling cctbx.python does not give a useable environment. After fixing up those paths (manually) I got a working python shell where import cctbx works like it should. I'll gladly help in debugging/testing an ebuld of the most recent version of cctbx. With regards, Jan Simons Institute of Crystallography RWTH Aachen University