From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from <gentoo-science+bounces-1271-garchives=archives.gentoo.org@lists.gentoo.org>) id 1PB13E-0005af-MI for garchives@archives.gentoo.org; Wed, 27 Oct 2010 08:08:04 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id CF7E2E091A; Wed, 27 Oct 2010 08:07:32 +0000 (UTC) Received: from mailgate-02.zdv.uni-mainz.de (mailgate-02.zdv.Uni-Mainz.DE [134.93.178.246]) by pigeon.gentoo.org (Postfix) with ESMTP id 83E6AE091A for <gentoo-science@lists.gentoo.org>; Wed, 27 Oct 2010 08:07:32 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=uni-mainz.de; i=cschwan@students.uni-mainz.de; q=dns/txt; s=ironport; t=1288166852; x=1319702852; h=from:to:subject:date:references:in-reply-to:mime-version: content-transfer-encoding:message-id; z=From:=20Christopher=20Schwan=20<cschwan@students.uni-mai nz.de>|To:=20<gentoo-science@lists.gentoo.org>|Subject: =20Re:=20[gentoo-science]=20[sage-on-gentoo]=20Sage-4.5.3 =20segmentation=20fault|Date:=20Wed,=2027=20Oct=202010=20 10:07:25=20+0200|References:=20<20101026123223.d0b84170.v _2e@ukr.net>=20<201010270845.00339.f.r.bissey@massey.ac.n z>=20<20101026231412.291361f7.v_2e@ukr.net>|In-Reply-To: =20<20101026231412.291361f7.v_2e@ukr.net>|MIME-Version: =201.0|Content-Transfer-Encoding:=20quoted-printable |Message-ID:=20<201010271007.25794.cschwan@students.uni-m ainz.de>; bh=pGRoqTcr4V8sHOn7XMdvNMdRFblBGte9R9pzCOYwg8k=; b=aehsfBkVQmKqo+rm/FRHuAW2j30N1ZNflVv8Cj7MDmTZpFc49n0Jye1V J5zPNFUXBslTY44ve5Y1UdrjA4bebv8B3eBm21VyWo/wyuSpdZ9VX/hZS oU7gUL+EUWd9xNPdyM88zVsB/UPt3FsBwOSywPpqrR6wFq7Dkv2FSk2l1 k=; X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: ApwEAPp6x0wKXgZQ/2dsb2JhbACDIJ8pq1eRc4EigzJ0BI1h Received: from e14hub-01.zdv.uni-mainz.de ([10.94.6.80]) by mailgate-02.zdv.uni-mainz.de with ESMTP; 27 Oct 2010 10:07:31 +0200 Received: from gnuke-notebook.localnet (134.93.84.88) by mail.uni-mainz.de (10.94.6.82) with Microsoft SMTP Server (TLS) id 14.1.218.12; Wed, 27 Oct 2010 10:07:30 +0200 From: Christopher Schwan <cschwan@students.uni-mainz.de> To: <gentoo-science@lists.gentoo.org> Subject: Re: [gentoo-science] [sage-on-gentoo] Sage-4.5.3 segmentation fault Date: Wed, 27 Oct 2010 10:07:25 +0200 User-Agent: KMail/1.13.5 (Linux/2.6.34-gentoo-r12; KDE/4.4.5; i686; ; ) References: <20101026123223.d0b84170.v_2e@ukr.net> <201010270845.00339.f.r.bissey@massey.ac.nz> <20101026231412.291361f7.v_2e@ukr.net> In-Reply-To: <20101026231412.291361f7.v_2e@ukr.net> Precedence: bulk List-Post: <mailto:gentoo-science@lists.gentoo.org> List-Help: <mailto:gentoo-science+help@lists.gentoo.org> List-Unsubscribe: <mailto:gentoo-science+unsubscribe@lists.gentoo.org> List-Subscribe: <mailto:gentoo-science+subscribe@lists.gentoo.org> List-Id: Gentoo Linux mail <gentoo-science.gentoo.org> X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Message-ID: <201010271007.25794.cschwan@students.uni-mainz.de> X-Originating-IP: [134.93.84.88] X-Archives-Salt: 56840dce-ab4b-4945-bf5d-d0eb2791a9d3 X-Archives-Hash: 9e2553c829f85353c0be821dcc3b9275 Hi, On Tuesday 26 October 2010 22:14:12 v_2e@ukr.net wrote: > On Wed, 27 Oct 2010 08:45:00 +1300 >=20 > Fran=C3=A7ois Bissey <f.r.bissey@massey.ac.nz> wrote: > > I believe you may be the first person to try out python 2.6.6 with sage. > > You may need to rebuild cython-0.12.1 (don't use 0.13) possibly numpy, > > scipy, pexpect, ipython, matplotlib, mpmath, sympy, pynac, networx, > > sphinx and then rebuild sage-clib and sage itself again. There may be > > more but any one of these could be at fault. >=20 > I have rebuilt Cython-0.12.1 today just before starting this thread. > So, this is not because of Cython, I guess. I'll try to rebuild the > packages you mentioned one by one and find the one causing the > segfault. And then report back here. If you do not find anything, please try the following: USE=3Ddebug emerge -1 sage-baselayout Also, make sure that the GNU Debugger is installed (emerge gdb). You may no= w=20 start Sage with sage -gdb which spawns Sage in a gdb session. Sage will crash just as before, but you= =20 may retrieve a backtrace via typing bt That output would be interesting and may directly lead us to the root of th= e=20 problem. >=20 > Regards, > Vladimir >=20 > ----- > <v_2e@ukr.net> Cheers, Christopher