From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1P5abb-0006md-KJ for garchives@archives.gentoo.org; Tue, 12 Oct 2010 08:53:07 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 79299E094B; Tue, 12 Oct 2010 08:52:54 +0000 (UTC) Received: from mxi2.callplus.net.nz (mx194.callplus.net.nz [202.180.66.194]) by pigeon.gentoo.org (Postfix) with ESMTP id 09319E094B for ; Tue, 12 Oct 2010 08:52:53 +0000 (UTC) X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: AkQHANu9s0x8xQFN/2dsb2JhbACTVYc+hj5yvWCFSASKQYR/ Received: from 124-197-1-77.callplus.net.nz (HELO vrooom.localnet) ([124.197.1.77]) by ismtp02.callplus.net.nz with ESMTP; 12 Oct 2010 21:52:52 +1300 From: =?iso-8859-1?q?Fran=E7ois_Bissey?= To: gentoo-science@lists.gentoo.org Subject: Re: [gentoo-science] undefined symbol: dgetri_ -- again. Date: Tue, 12 Oct 2010 21:52:48 +1300 User-Agent: KMail/1.13.5 (Linux/2.6.32-gentoo-r7; KDE/4.4.5; i686; ; ) References: <20101012110715.f6a27593.v_2e@ukr.net> <201010122128.55523.f.r.bissey@massey.ac.nz> <20101012114028.c1bbd8eb.v_2e@ukr.net> In-Reply-To: <20101012114028.c1bbd8eb.v_2e@ukr.net> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: Text/Plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Message-Id: <201010122152.48801.f.r.bissey@massey.ac.nz> X-Archives-Salt: 44309ad8-36d4-478d-83f5-6b4e62f25196 X-Archives-Hash: fd381dd3ad5712f8c11e9587318c0d0f > On Tue, 12 Oct 2010 21:28:55 +1300 >=20 > Fran=E7ois Bissey wrote: > > Yes you have the typical configuration that was leading to trouble and > > that we have dealt with. If you are using the latest linbox ebuild from > > the overlay and it still doesn't work, send us the output of > > ldd /usr/lib64/liblinboxsage.so >=20 > I'm using the > '/var/lib/layman/sage-on-gentoo/sci-libs/linbox/linbox-1.1.6-r3.ebuild' > from yesterday-synced layman 'sage-on-gentoo' overlay. >=20 > ldd /usr/lib64/liblinboxsage.so gives the following: >=20 > linux-vdso.so.1 =3D> (0x00007fffd2f75000) > libntl-5.5.2.so =3D> /usr/lib/libntl-5.5.2.so (0x00007ff6a00a6000) > liblinbox.so.0 =3D> /usr/lib/liblinbox.so.0 (0x00007ff69fe95000) > libblas.so.0 =3D> /usr/lib/libblas.so.0 (0x00007ff69fc72000) > libgmp.so.10 =3D> /usr/lib/libgmp.so.10 (0x00007ff69fa03000) > libgivaro.so.0 =3D> /usr/lib/libgivaro.so.0 (0x00007ff69f7b2000) > libstdc++.so.6 =3D> /usr/lib/gcc/x86_64-pc-linux-gnu/4.4.4/libstdc > ++.so.6 (0x00007ff69f49e000) libm.so.6 =3D> /lib/libm.so.6 > (0x00007ff69f21d000) libc.so.6 =3D> /lib/libc.so.6 (0x00007ff69eeb7000) > libgcc_s.so.1 =3D> /lib/libgcc_s.so.1 (0x00007ff69ec9f000) > libgmp.so.3 =3D> /usr/lib/libgmp.so.3 (0x00007ff69ea48000) > libgf2x.so.1 =3D> /usr/lib/libgf2x.so.1 (0x00007ff69e83a000) > libgfortran.so.3 > =3D> /usr/lib/gcc/x86_64-pc-linux-gnu/4.4.4/libgfortran.so.3 > (0x00007ff69e54b000) libatlas.so.0 =3D> /usr/lib/libatlas.so.0 > (0x00007ff69df07000) /lib64/ld-linux-x86-64.so.2 (0x00007ff6a0889000) >=20 > > And also how recently you have synced the main tree, has the last fix > > required an eclass bug to be fixed. >=20 > I have synced the main tree yesterday, just before updating Sage and > the packages it depends on. > I'm not sure I understand you right about 'has the last fix required > an eclass bug to be fixed'. >=20 I meant an "as an eclass bug had to be fixed", the fix developed by me=20 Martin von Gagern wouldn't take because the autotool eclass missed some=20 double quotes see bug #339227. Basically as far as we understand that's a problem when using gsl for your cblas. There are two workarounds while we work out why it doesn't work for= =20 you: 1) switch to atlas cblas or 2) compile gsl with the "static-libs" useflag. Then recompile linbox. Before you do that, it would be helpful if you sent us a build log of=20 lnbox-1.1.6-r3 and if you know how the configuration log of linbox. Cheers, =46rancois