From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1Oj61E-0006dM-OZ for garchives@archives.gentoo.org; Wed, 11 Aug 2010 07:46:37 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id E911EE090E; Wed, 11 Aug 2010 07:46:17 +0000 (UTC) Received: from mailgate-01.zdv.uni-mainz.de (mailgate-01.zdv.Uni-Mainz.DE [134.93.178.241]) by pigeon.gentoo.org (Postfix) with ESMTP id 83DCEE090E for ; Wed, 11 Aug 2010 07:46:17 +0000 (UTC) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=uni-mainz.de; i=cschwan@students.uni-mainz.de; q=dns/txt; s=ironport; t=1281512778; x=1313048778; h=from:to:subject:date:references:in-reply-to:mime-version: content-transfer-encoding:message-id; z=From:=20Christopher=20Schwan=20|To:=20|Subject: =20Re:=20[gentoo-science]=20[sage-on-gentoo]=20Sage-4.5.2 =20build=20problem=20and=20a=20"run-time"=20errors.|Date: =20Wed,=2011=20Aug=202010=2009:46:07=20+0200|References: =20<20100811091847.69233077.v_2e@ukr.net>|In-Reply-To:=20 <20100811091847.69233077.v_2e@ukr.net>|MIME-Version:=201. 0|Content-Transfer-Encoding:=207bit|Message-ID:=20<201008 110946.07612.cschwan@students.uni-mainz.de>; bh=CVRB4ZVQUpNlPXLrbxqOlb+d9bVCMi9WlkOGRM0Ka4g=; b=OV5KrXxZXDa+b9D496ZivXAmp/FzAWsQaOvN1QRrMc8fUediqWabzvN9 t3sESQj+AuOLh3YZhuvS/OJpj+t+R+yl1Wu0nYA8stmJIv6tcKv2cMV/A cmpmll2zY8NhMiS1so6gnaJnwFcQlQjHfQa5MS5P9ehhNL5rOwMDM4TvZ s=; X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: AnEFABfyYUwKXgZY/2dsb2JhbACTOY1yvB+FOgSMKA Received: from e14hub-02.zdv.uni-mainz.de ([10.94.6.88]) by mailgate-01.zdv.uni-mainz.de with ESMTP; 11 Aug 2010 09:46:16 +0200 Received: from gnuke-notebook.localnet (134.93.86.71) by mail.uni-mainz.de (10.94.6.90) with Microsoft SMTP Server (TLS) id 14.1.208.1; Wed, 11 Aug 2010 09:46:16 +0200 From: Christopher Schwan To: Subject: Re: [gentoo-science] [sage-on-gentoo] Sage-4.5.2 build problem and a "run-time" errors. Date: Wed, 11 Aug 2010 09:46:07 +0200 User-Agent: KMail/1.13.5 (Linux/2.6.34-gentoo-r1; KDE/4.4.5; i686; ; ) References: <20100811091847.69233077.v_2e@ukr.net> In-Reply-To: <20100811091847.69233077.v_2e@ukr.net> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: 7bit Message-ID: <201008110946.07612.cschwan@students.uni-mainz.de> X-Originating-IP: [134.93.86.71] X-Archives-Salt: 7496c738-f500-46bd-b6c7-4e05b53379fa X-Archives-Hash: 6b196990353b163c0fcd92544ace57d1 Hi, thanks for your mail! On Wednesday 11 August 2010 08:18:47 v_2e@ukr.net wrote: > Hello! > I've got some problems after upgrading Sage to 4.5.1 and to 4.5.2 after > that. > First of all, sage-baselayout-4.5.2 blocks sage-4.5.2, but if I delete > the "DEPEND="!! /var/lib/layman/sage-on-gentoo/sci-mathematics/sage-baselayout/sage-baselay > out-4.5.2.ebuild file, I can emerge it. That blocker means that you should remove sage-4.5.1 (its blocking 4.5.1, not 4.5.2!) first and then perform the upgrade - thats because I have put the .desktop file from sage into sage-baselayout. Without this blocker there would be file collisions. > Still, after starting Sage I get this error message: > > ########## Qoute begins ########## > ImportError Traceback (most recent call > last) > > /usr/lib64/python2.6/site-packages/IPython/ipmaker.pyc in force_import > (modname, force_reload) 61 reload(sys.modules[modname]) > 62 else: > ---> 63 __import__(modname) > 64 > 65 > > /usr/bin/ipy_profile_sage.py in () > 5 preparser(True) > 6 > ----> 7 import sage.all_cmdline > 8 sage.all_cmdline._init_cmdline(globals()) > 9 > > /usr/lib64/python2.6/site-packages/sage/all_cmdline.py in () > 12 try: > 13 > ---> 14 from sage.all import * > 15 from sage.calculus.predefined import x > 16 preparser(on=True) > > /usr/lib64/python2.6/site-packages/sage/all.py in () > 71 > 72 from sage.rings.all import * > ---> 73 from sage.matrix.all import * > 74 > 75 # This must come before Calculus -- it initializes the Pynac > library. > > /usr/lib64/python2.6/site-packages/sage/matrix/all.py in () > ----> 1 > 2 > 3 from matrix_space import MatrixSpace, is_MatrixSpace > 4 from constructor import matrix, Matrix, random_matrix, > diagonal_matrix, identity_matrix, block_matrix, block_diagonal_matrix, > jordan_block, zero_matrix 5 from matrix import is_Matrix 6 from > berlekamp_massey import berlekamp_massey 7 > > /usr/lib64/python2.6/site-packages/sage/matrix/matrix_space.pyc in > () 35 import matrix_generic_sparse > 36 > ---> 37 import matrix_modn_dense > 38 import matrix_modn_sparse > 39 > > /usr/bin/matrix_integer_dense.pxd in init sage.matrix.matrix_modn_dense > (sage/matrix/matrix_modn_dense.c:14829)() 10 > 11 > ---> 12 > 13 > 14 > > /usr/bin/linbox.pxd in init sage.matrix.matrix_integer_dense > (sage/matrix/matrix_integer_dense.c:39016)() 5 > 6 > ----> 7 > 8 > 9 > > ImportError: /usr/lib/liblinboxsage.so.0: undefined symbol: dgetri_ > Error importing ipy_profile_sage - perhaps you should run %upgrade? > WARNING: Loading of ipy_profile_sage failed. > ########### Qoute ends ########## The symbol dgetri_ is from lapack which should be removed from linbox; merge linbox again (make sure its -r3) and try to start Sage. Please report back if it works or not! > > > ----- > Cheers, Christopher