Re: [gentoo-science] [sage-on-gentoo] Sage-4.5.2 build problem and a "run-time" errors.

[Christopher Schwan <cschwan@students.uni-mainz.de>]

Hi,

thanks for your mail!

On Wednesday 11 August 2010 08:18:47 v_2e@ukr.net wrote:
> Hello!
> I've got some problems after upgrading Sage to 4.5.1 and to 4.5.2 after
> that.
> First of all, sage-baselayout-4.5.2 blocks sage-4.5.2, but if I delete
> the "DEPEND="!!<sci-mathematics/sage-4.5.2"" line from
> /var/lib/layman/sage-on-gentoo/sci-mathematics/sage-baselayout/sage-baselay
> out-4.5.2.ebuild file, I can emerge it.

That blocker means that you should remove sage-4.5.1 (its blocking 4.5.1, not 
4.5.2!) first and then perform the upgrade - thats because I have put the 
.desktop file from sage into sage-baselayout. Without this blocker there would 
be file collisions.

> Still, after starting Sage I get this error message:
> 
> ########## Qoute begins ##########
> ImportError                               Traceback (most recent call
> last)
> 
> /usr/lib64/python2.6/site-packages/IPython/ipmaker.pyc in force_import
> (modname, force_reload) 61         reload(sys.modules[modname])
>      62     else:
> ---> 63         __import__(modname)
>      64
>      65
> 
> /usr/bin/ipy_profile_sage.py in <module>()
>       5     preparser(True)
>       6
> ----> 7     import sage.all_cmdline
>       8     sage.all_cmdline._init_cmdline(globals())
>       9
> 
> /usr/lib64/python2.6/site-packages/sage/all_cmdline.py in <module>()
>      12 try:
>      13
> ---> 14     from sage.all import *
>      15     from sage.calculus.predefined import x
>      16     preparser(on=True)
> 
> /usr/lib64/python2.6/site-packages/sage/all.py in <module>()
>      71
>      72 from sage.rings.all      import *
> ---> 73 from sage.matrix.all     import *
>      74
>      75 # This must come before Calculus -- it initializes the Pynac
> library.
> 
> /usr/lib64/python2.6/site-packages/sage/matrix/all.py in <module>()
> ----> 1
>       2
>       3 from matrix_space import MatrixSpace, is_MatrixSpace
>       4 from constructor import matrix, Matrix, random_matrix,
> diagonal_matrix, identity_matrix, block_matrix, block_diagonal_matrix,
> jordan_block, zero_matrix 5 from matrix import is_Matrix 6 from
> berlekamp_massey import berlekamp_massey 7
> 
> /usr/lib64/python2.6/site-packages/sage/matrix/matrix_space.pyc in
> <module>() 35 import matrix_generic_sparse
>      36
> ---> 37 import matrix_modn_dense
>      38 import matrix_modn_sparse
>      39
> 
> /usr/bin/matrix_integer_dense.pxd in init sage.matrix.matrix_modn_dense
> (sage/matrix/matrix_modn_dense.c:14829)() 10
>      11
> ---> 12
>      13
>      14
> 
> /usr/bin/linbox.pxd in init sage.matrix.matrix_integer_dense
> (sage/matrix/matrix_integer_dense.c:39016)() 5
>       6
> ----> 7
>       8
>       9
> 
> ImportError: /usr/lib/liblinboxsage.so.0: undefined symbol: dgetri_
> Error importing ipy_profile_sage - perhaps you should run %upgrade?
> WARNING: Loading of ipy_profile_sage failed.
> ########### Qoute ends ##########

The symbol dgetri_ is from lapack which should be removed from linbox; merge 
linbox again (make sure its -r3) and try to start Sage. Please report back if 
it works or not!

> 
> 
> -----
>  <v_2e@ukr.net>

Cheers,

Christopher