[gentoo-science] problem with sage-core-4.4

[gentoo-science] problem with sage-core-4.4

[Marek Kaluba]

Hi,

here's what I get when trying to emerge sage-core-4.4:

python `which cython` --embed-positions --directive cdivision=True -I/var/tmp/portage/sci-
mathematics/sage-core-4.4/work/sage-4.4 -o sage/libs/symmetrica/symmetrica.c 
sage/libs/symmetrica/symmetrica.pyx
sage/libs/symmetrica/symmetrica.pyx --> build/sage/libs/symmetrica/symmetrica.pyx
python `which cython` --embed-positions --directive cdivision=True -I/var/tmp/portage/sci-
mathematics/sage-core-4.4/work/sage-4.4 -o sage/libs/mpmath/utils.c 
sage/libs/mpmath/utils.pyx
sage/libs/mpmath/utils.pyx --> build/sage/libs/mpmath/utils.pyx
python `which cython` --embed-positions --directive cdivision=True -I/var/tmp/portage/sci-
mathematics/sage-core-4.4/work/sage-4.4 -o sage/libs/mpmath/ext_impl.c 
sage/libs/mpmath/ext_impl.pyx

Error converting Pyrex file to C:
------------------------------------------------------------
...
from sage.libs.gmp.all cimport mpz_t
                                   ^
------------------------------------------------------------

/var/tmp/portage/sci-mathematics/sage-
core-4.4/work/sage-4.4/sage/libs/mpmath/ext_impl.pxd:1:36: Unrecognized character

Error converting Pyrex file to C:


Error running command, failed with status 256.
 * ERROR: sci-mathematics/sage-core-4.4 failed:
 *   Building failed
 * 
 * Call stack:
 *     ebuild.sh, line   54:  Called src_compile
 *   environment, line 4793:  Called distutils_src_compile
 *   environment, line 1298:  Called die
 * The specific snippet of code:
 *           "$(PYTHON)" setup.py "${DISTUTILS_GLOBAL_OPTIONS[@]}" build "$@" || die 
"Building failed";
 * 
 * If you need support, post the output of 'emerge --info =sci-mathematics/sage-core-4.4',
 * the complete build log and the output of 'emerge -pqv =sci-mathematics/sage-core-4.4'.
 * This ebuild used the following eclasses from overlays:
 *   /var/lib/layman/sage-on-gentoo/eclass/sage.eclass
 * This ebuild is from an overlay named 'sage-on-gentoo': '/var/lib/layman/sage-on-
gentoo/'
 * The complete build log is located at '/var/tmp/portage/sci-mathematics/sage-
core-4.4/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/sage-
core-4.4/temp/environment'.
 * S: '/var/tmp/portage/sci-mathematics/sage-core-4.4/work/sage-4.4'

>>> Failed to emerge sci-mathematics/sage-core-4.4
____________________________________________________________________________________________

emerge --info
Portage 2.1.8.3 (default/linux/amd64/10.0/desktop, gcc-4.4.3, glibc-2.11.1-r0, 2.6.32-
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Re: [gentoo-science] problem with sage-core-4.4

[François Bissey]

Hi Marek,

I see that you are using the new python-2.6.5-r99 *which* is 
experimental at this point.
Has cython been rebuild after the python upgrade? If not
you should do that first.
I may be able to determine if python is the culprit on Monday.

Francois

Re: [gentoo-science] problem with sage-core-4.4

[François Bissey]

> Hi,
> 
> here's what I get when trying to emerge sage-core-4.4:
> 
> python `which cython` --embed-positions --directive cdivision=True
> -I/var/tmp/portage/sci- mathematics/sage-core-4.4/work/sage-4.4 -o
> sage/libs/symmetrica/symmetrica.c sage/libs/symmetrica/symmetrica.pyx
> sage/libs/symmetrica/symmetrica.pyx -->
> build/sage/libs/symmetrica/symmetrica.pyx python `which cython`
> --embed-positions --directive cdivision=True -I/var/tmp/portage/sci-
> mathematics/sage-core-4.4/work/sage-4.4 -o sage/libs/mpmath/utils.c
> sage/libs/mpmath/utils.pyx
> sage/libs/mpmath/utils.pyx --> build/sage/libs/mpmath/utils.pyx
> python `which cython` --embed-positions --directive cdivision=True
> -I/var/tmp/portage/sci- mathematics/sage-core-4.4/work/sage-4.4 -o
> sage/libs/mpmath/ext_impl.c sage/libs/mpmath/ext_impl.pyx
> 
> Error converting Pyrex file to C:
> ------------------------------------------------------------
> ...
> from sage.libs.gmp.all cimport mpz_t
>                                    ^
> ------------------------------------------------------------
> 
Christopher reminded me you had this before in March!
You may have to change mpmath version (again).
Apparently that's how you solved it then.

Francois

Re: [gentoo-science] problem with sage-core-4.4

[Marek Kaluba]

On Saturday 01 May 2010 13:17:55 François Bissey wrote:
> > Hi,

> 
> Christopher reminded me you had this before in March!
> You may have to change mpmath version (again).
> Apparently that's how you solved it then.
> 
> Francois

Oh, wow

It just slipped my mind! I checked and as You said, exactly the same error happened to me 
before(March), but at first I would bet, that I had never had it. More sleep is what I 
need ;-)

I had solved it the same way I solved it now:

downgrade python to 2.6.4-r99

Last time i had this problem, python 2.6.5 entered portage tree and replaced sage version.

So it may suggest, that there is some problem with python-2.6.5 and sage interacting.

cheers

marek