From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([69.77.167.62] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1LPMwI-000888-5A for garchives@archives.gentoo.org; Tue, 20 Jan 2009 20:11:10 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 6B13AE051F; Tue, 20 Jan 2009 20:11:05 +0000 (UTC) Received: from fg-out-1718.google.com (fg-out-1718.google.com [72.14.220.157]) by pigeon.gentoo.org (Postfix) with ESMTP id 25878E051F for ; Tue, 20 Jan 2009 20:11:05 +0000 (UTC) Received: by fg-out-1718.google.com with SMTP id e21so1625270fga.14 for ; Tue, 20 Jan 2009 12:11:04 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=gamma; h=domainkey-signature:received:received:sender:from:to:subject:date :user-agent:references:in-reply-to:mime-version:content-type :content-transfer-encoding:message-id; bh=B7gKng/EFVsgaWrY/D/DtYDETEzV77ShMczgVYNuvWs=; b=KtT9Y7KHFfO95uMEjvwWlHErVPV6uYI1Pt4g5gEJ5LMzmo3j4oedunPtU5j25PK7hg 9Ddhzl1YC6Xt7F8yGDrHxUjfIB8Xp3aedEYpLFbUJzHdEvokEaDRzvpV4E3SxZWkkJt2 rx9V7DuCdSs2pHiFPq5CCOMa3R86JTqCzDsC4= DomainKey-Signature: a=rsa-sha1; c=nofws; d=gmail.com; s=gamma; h=sender:from:to:subject:date:user-agent:references:in-reply-to :mime-version:content-type:content-transfer-encoding:message-id; b=gGNtcB5na2H/JtpvqC1E51/CWfvH1N54xPkMsITH+d306xe5ixPl9pzG1Ux9LG8MSx KWt5m2Cg7MIt9yfe7aZiqiuLIfSggevqEAHdve478PifpOXCOO0Ccw6Uueq/Ayjsu+zG MTO8hHdTOpvHKgXqLW+dM1D52wB/DgjhfOo4Y= Received: by 10.103.193.12 with SMTP id v12mr3205402mup.23.1232482264513; Tue, 20 Jan 2009 12:11:04 -0800 (PST) Received: from xeon.gentoo.ru ([79.173.81.171]) by mx.google.com with ESMTPS id u9sm6720743muf.4.2009.01.20.12.11.02 (version=SSLv3 cipher=RC4-MD5); Tue, 20 Jan 2009 12:11:03 -0800 (PST) Sender: Alexey Shvetsov From: Alexey Shvetsov To: gentoo-science@lists.gentoo.org Subject: Re: [gentoo-science] sys-cluster infiniband , mpi related soft. update request Date: Tue, 20 Jan 2009 23:10:41 +0300 User-Agent: KMail/1.11.0 (Linux/2.6.28-gentoo; KDE/4.1.96; x86_64; ; ) References: <497629A5.2060001@mol.uj.edu.pl> In-Reply-To: <497629A5.2060001@mol.uj.edu.pl> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: multipart/signed; boundary="nextPart1480974.dWckgrpbHE"; protocol="application/pgp-signature"; micalg=pgp-sha1 Content-Transfer-Encoding: 7bit Message-Id: <200901202310.59948.alexxy@gentoo.org> X-Archives-Salt: aa2e6170-9f1f-4c19-9ca1-5123b0a67d96 X-Archives-Hash: 5f3d53a6011e8ce39f24533712615ad9 --nextPart1480974.dWckgrpbHE Content-Type: text/plain; charset="iso-8859-2" Content-Transfer-Encoding: quoted-printable Content-Disposition: inline Janusz Mordarski wrote: > Hello, i've seen that Infiniband drivers and other related stuff, like > MVAPICH2 and openib etc. are a bit outdated. Recently i started > administering a HPC cluster for molecular dynamics simulations (for ex. > gromacs) from HP and found, that it works best on gentoo ;) . But i need > most recent, fastest infiniband and mpi software for my work. > gentoo-science overlay, if it comes to infiniband, doesn't work at all, > i had to change some ebuilds to make them compile and work, but still, > have some problems with MVAPICH2. > > Please sys-cluster developers, if it isn't too much work, update ebuilds > to open fabrics OFED 1.4 , MVAPICH 1.2 etc. (all dependencies). Or > please, give me some instructions how to publish my modified ebuilds > that, at least works (on contrast to openib-1.1.ebuild from overlay ;) ) > > best regards, Janusz Hi I'm going update openib for gentoo to 1.4. And also i use gentoo cluster wi= th=20 IB for molecular dynamics with gromacs. =3D) BTW seems openmpi wiorks wit IB too so i gonna update it 1.3 =2D-=20 Alexey 'Alexxy' Shvetsov Gentoo Team Ru --nextPart1480974.dWckgrpbHE Content-Type: application/pgp-signature; name=signature.asc Content-Description: This is a digitally signed message part. -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.9 (GNU/Linux) iEYEABECAAYFAkl2L9MACgkQ5BmOA85PVLiNPwCgq6IEnpxaEXI8RKcoM9sGwVRo VZMAn2AEarb78AsU2zzsCjC0fg7m5CUZ =qzBu -----END PGP SIGNATURE----- --nextPart1480974.dWckgrpbHE--