From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from lists.gentoo.org ([140.105.134.102] helo=robin.gentoo.org) by nuthatch.gentoo.org with esmtp (Exim 4.62) (envelope-from ) id 1HLfdS-0004Xg-18 for garchives@archives.gentoo.org; Mon, 26 Feb 2007 13:11:22 +0000 Received: from robin.gentoo.org (localhost [127.0.0.1]) by robin.gentoo.org (8.14.0/8.14.0) with SMTP id l1QD9unS013457; Mon, 26 Feb 2007 13:09:56 GMT Received: from colo15.ukhost4u.com (colo15.ukhost4u.com [85.13.251.161]) by robin.gentoo.org (8.14.0/8.14.0) with ESMTP id l1QD9s4H013413 for ; Mon, 26 Feb 2007 13:09:55 GMT Received: from 80-36-246-201.adsl.terra.cl ([201.246.36.80] helo=[192.168.1.14]) by colo15.ukhost4u.com with esmtpa (Exim 4.63) (envelope-from ) id 1HLfbw-0006nV-QZ for gentoo-science@lists.gentoo.org; Mon, 26 Feb 2007 13:09:49 +0000 From: "Matthew R. Lee" Organization: CASEB, P.Universidad Catolica de Chile To: gentoo-science@lists.gentoo.org Subject: Re: [gentoo-science] lapack 3.0? Date: Mon, 26 Feb 2007 10:09:02 -0300 User-Agent: KMail/1.9.5 References: <200702241007.46155.gentoo@matthewlee.org> <200702251718.21765.gentoo@matthewlee.org> <45E22C1F.8040805@cesmail.net> In-Reply-To: <45E22C1F.8040805@cesmail.net> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Content-Disposition: inline Message-Id: <200702261009.03591.gentoo@matthewlee.org> X-AntiAbuse: This header was added to track abuse, please include it with any abuse report X-AntiAbuse: Primary Hostname - colo15.ukhost4u.com X-AntiAbuse: Original Domain - lists.gentoo.org X-AntiAbuse: Originator/Caller UID/GID - [0 0] / [47 12] X-AntiAbuse: Sender Address Domain - matthewlee.org X-Source: X-Source-Args: X-Source-Dir: X-Archives-Salt: 00173453-ffd4-479b-9de7-6c9589165fba X-Archives-Hash: 46c6f90cbcbab4bc8cc693e16b2f7001 On Sunday 25 February 2007 21:38, M. Edward (Ed) Borasky wrote: > Matthew R. Lee wrote: > > On Saturday 24 February 2007 18:50, Patrice Beaud wrote: > >> Matthew R. Lee a =E9crit : > >>> I've just installed the science overlay because I want to use rkward > >>> However when I try "emerge -pv rkward" it tells me there are no ebuil= ds > >>> to satisfy ">=3Dsci-libs/lapack-3.0" > >>> This is the first time I've used an overlay, so is this a bug in the > >>> ebuild of rkward or am I missing something? > >>> > >>> Matt > >> > >> It seems like the ebuild is outdated... (Note: I didn't know however > >> RKward existed. Thank you!) > >> > >> I make a: > >> cp -a /usr/portage/local/layman/science/sci-mathematics/rkward/ > >> /usr/local/portage/sci-mathematics/ > >> > >> Change the name of the ebuild from rkward-0.3.7_pre1.ebuild to > >> rkward-0.4.6.ebuild. > >> > >> > >> Modify the ebuild: > >> > >> 10c10 > >> < SRC_URI=3D"http://rkward.sourceforge.net/temp/rkward-0.3.7pre1.tar.g= z" > >> --- > >> > >> > SRC_URI=3D"mirror://sourceforge/${PN}/${P}.tar.gz" > >> > >> 17c17 > >> < DEPEND=3D">=3Dsci-libs/lapack-3.0 > >> --- > >> > >> > DEPEND=3D">=3Dvirtual/lapack-3.0 > >> > >> 27c27 > >> < mv rkward-0.3.7pre1 rkward-0.3.7_pre1 || die > >> --- > >> > >> > # mv rkward-0.3.7pre1 rkward-0.3.7_pre1 || die > >> > >> run > >> ebuild /usr/local/portage/sci-mathematics/rkward/rkward-0.4.6.ebuild > >> digest > >> > >> > >> I started emerging and it stops with a sandbox violation: > >> --------------------------- ACCESS VIOLATION SUMMARY > >> --------------------------- > >> LOG FILE =3D > >> "/var/log/sandbox/sandbox-sci-mathematics_-_rkward-0.4.6-14654.log" > >> > >> open_wr: /usr/qt/3/etc/settings/.qtrc.lock > >> open_wr: /usr/qt/3/etc/settings/.qtrc.lock > >> ----------------------------------------------------------------------= =2D- > >>--- ----- > >> > >> I continue without sandbox... :-( > >> RKward was installed and it works. > >> > >> > >> Thank you (I can try R) and Good luck ! > >> Patrice > > > > Patrice, > > Thanks for the help. I made some modifications to the ebuild and I too > > now have rkward-0.4.6 running. I didn't encounter the same problem with > > the sand box, which is just as well as I don't know how to run an ebuild > > without the sandbox :-) > > Given that this ebuild is a. out of date, and b. doesn't work. Is there > > anyone maintaining it? I would volunteer, but I have zero experience of > > putting ebuilds together. If someone who knows what they are doing was > > available on the end of the email to answer my (bleedin' obvious > > questions, I'm just a marine ecologist :-)) I'd give it a go. I'd like > > to learn how to create ebuilds as there are other packages in addition = to > > rkward that I'd like to see in the tree, like xtides > > > > Matt > > I'm a little curious about something ... does "rkward" actually require > an external Lapack, or is this optional? The reason I ask is that R > itself *contains* a copy of Lapack, and the R developers have deprecated > linking against external Lapack libraries! > I don't know. But the ebuild was for version 0.3.7. Back then maybe it di= d=20 need lapack and now it doesn't for the reasons you've given. Matt =2D-=20 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Dr. Matthew R. Lee CASEB & ECIM Departamento de Ecologia, P. Universidad Catolica de Chile, Alameda 340, Santiago. CP 6513677 CHILE matt@matthewlee.org mlee@bio.puc.cl URL: meiochile.matthewlee.org %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -- gentoo-science@gentoo.org mailing list