From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1MRWVD-0005L8-2N for garchives@archives.gentoo.org; Thu, 16 Jul 2009 19:20:23 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id D77A1E062C; Thu, 16 Jul 2009 19:20:20 +0000 (UTC) Received: from mail-ew0-f217.google.com (mail-ew0-f217.google.com [209.85.219.217]) by pigeon.gentoo.org (Postfix) with ESMTP id 9E0C3E062C for ; Thu, 16 Jul 2009 19:20:20 +0000 (UTC) Received: by ewy17 with SMTP id 17so209545ewy.34 for ; Thu, 16 Jul 2009 12:20:20 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=gamma; h=domainkey-signature:mime-version:sender:received:in-reply-to :references:date:x-google-sender-auth:message-id:subject:from:to :content-type:content-transfer-encoding; bh=YtVLp0/YOpnYiIHu2QQ6YtLNgfyWZvPHcvBMiW5LRqM=; b=N6LxHWcby0866DW9QgXO+DfwcfvimA7wWXyo7f/J7fsyEqRdeQyF3lVugOBP9b+Gxw zeNeSlNLqez6eyQ3abJCMlylVPeErPAFycZVolG5E6jWWDfQ7bCxzbS9rSVEbZv0g7VF HsrLQVzJDMXE1QKA44CxseGNkJQwX+tPLPX6A= DomainKey-Signature: a=rsa-sha1; c=nofws; d=gmail.com; s=gamma; h=mime-version:sender:in-reply-to:references:date :x-google-sender-auth:message-id:subject:from:to:content-type :content-transfer-encoding; b=SHX3JKnQUy8LZSiBjLNuoalLpm+zfIuXXk2VsIl+x09c5D/4IGCLlUxLZh81zqpQGz Rawjdx/ZJO7/1HoGXaL5BPZu0VyXewHdPvGBKovqpkdkAt0Pi0rBl5VMqA9V6q2qcPr3 fgygPVu0og5f+cNXRqriipTtC0uX2MEIjlU8M= Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org MIME-Version: 1.0 Sender: kislyuk@gmail.com Received: by 10.216.11.72 with SMTP id 50mr42827wew.64.1247772019761; Thu, 16 Jul 2009 12:20:19 -0700 (PDT) In-Reply-To: <1247750772.17144.5.camel@localhost> References: <1247750772.17144.5.camel@localhost> Date: Thu, 16 Jul 2009 15:20:19 -0400 X-Google-Sender-Auth: 071b5a8b71f45775 Message-ID: <17e1a1290907161220j340afffdkda7bdcf1d066a372@mail.gmail.com> Subject: Re: [gentoo-science] sci-biology/blast-db fails digest verification From: Andrey Kislyuk To: gentoo-science@lists.gentoo.org Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable X-Archives-Salt: 58cf4159-761f-4771-9161-75cb1bd61a20 X-Archives-Hash: 9877f6b58411eb307597b60e8052397c Hi Bjoern, The blast-db package is actually a bit of a problem precisely because of the issue you ran into and I'll probably remove it soon. Instead, you should use the update_blastdb.pl script that comes with ncbi-tools (/usr/share/doc/ncbi-tools*/html/blast/update_blastdb.pl) to download the databases and keep them updated. So what I intend to do in a future ncbi-tools release is move this script into /usr/bin and write a tutorial on how to use it, linked from the ncbi-tools elog output. Thanks -ak 2009/7/16 Bj=C3=B6rn Thorwirth : > Hi! > I just noticed this digest verification error. > > Best regards, > > Bjoern 'Thorwirth > -- > Bjoern Thorwirth, Zentrum f=C3=BCr Medizinische Biotechnologie, > Universit=C3=A4t Duisburg-Essen, Universit=C3=A4tsstr. 2, 45117 Essen, Ge= rmany > phone +49 201 183-4026, bjoern.thorwirth@uni-due.de > > >