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[80.222.156.122]) by mx.google.com with ESMTPS id x22sm36565277faa.5.2011.10.11.02.25.43 (version=SSLv3 cipher=OTHER); Tue, 11 Oct 2011 02:25:44 -0700 (PDT) Subject: Re: [gentoo-science] blas/lapack stuff From: My Th To: gentoo-science@lists.gentoo.org In-Reply-To: References: Content-Type: text/plain; charset="UTF-8" Date: Tue, 11 Oct 2011 12:25:42 +0300 Message-ID: <1318325142.26355.199.camel@RD-OC> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org Mime-Version: 1.0 X-Mailer: Evolution 2.32.3 Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: b959fdf6b24ab09bdcccf21717192c7b O , 2011-10-11 11:42 +0700, Andrey G. Grozin rakst=C4=ABja: > Hello *, >=20 > I use the science overlay, and for quite some time I have problems with= =20 > blas/lapack. Each attempt to emerge -uD @world produces something like >=20 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D > [blocks B ] app-admin/eselect-blas ("app-admin/eselect-blas" is=20 > blocking sci-libs/lapack-reference-3.3.1-r1, sci-libs/gsl-1.15-r1,=20 > sci-libs/blas-reference-20110418) > [blocks B ] app-admin/eselect-cblas ("app-admin/eselect-cblas" is=20 > blocking sci-libs/lapack-reference-3.3.1-r1, sci-libs/gsl-1.15-r1,=20 > sci-libs/blas-reference-20110418) > [blocks B ] app-admin/eselect-lapack ("app-admin/eselect-lapack" i= s=20 > blocking sci-libs/lapack-reference-3.3.1-r1, sci-libs/gsl-1.15-r1,=20 > sci-libs/blas-reference-20110418) >=20 > Total: 21 packages (21 upgrades), Size of downloads: 19,795 kB > Conflict: 4 blocks (3 unsatisfied) > Portage tree and overlays: > [0] /usr/portage > [1] /var/lib/layman/science >=20 > * Error: The above package list contains packages which cannot be > * installed at the same time on the same system. >=20 > (sci-libs/lapack-reference-3.3.1-r1::science, ebuild scheduled for=20 > merge) pulled in by > >=3Dsci-libs/lapack-reference-3.3 required by=20 > (virtual/lapack-3.3::science, ebuild scheduled for merge) >=20 > (app-admin/eselect-cblas-0.1::gentoo, installed) pulled in by > app-admin/eselect-cblas required by=20 > (sci-libs/blas-atlas-3.9.23-r4::gentoo, installed) >=20 > (sci-libs/blas-reference-20110418::science, ebuild scheduled for mer= ge)=20 > pulled in by > >=3Dsci-libs/blas-reference-20110417 required by=20 > (virtual/blas-2.1::science, ebuild scheduled for merge) >=20 > (app-admin/eselect-blas-0.1::gentoo, installed) pulled in by > app-admin/eselect-blas required by=20 > (sci-libs/blas-atlas-3.9.23-r4::gentoo, installed) >=20 > (sci-libs/gsl-1.15-r1::science, ebuild scheduled for merge) pulled i= n by > sci-libs/gsl required by (sci-mathematics/giac-0.9.3::grozin,=20 > installed) > sci-libs/gsl required by (sci-libs/mathgl-1.11.2::gentoo, installe= d) > sci-libs/gsl required by (sci-libs/tamu_anova-0.2.1::gentoo,=20 > installed) > sci-libs/gsl required by (sci-visualization/qtiplot-0.9.8.8::gento= o,=20 > installed) > sci-libs/gsl required by (media-gfx/asymptote-2.13::grozin, instal= led) > sci-libs/gsl required by (media-gfx/inkscape-0.48.2::gentoo,=20 > installed) > sci-libs/gsl required by (app-office/kspread-2.3.3::gentoo, instal= led) > >=3Dsci-libs/gsl-1.10 required by=20 > (sci-visualization/pyxplot-0.8.4::gentoo, installed) > >=3Dsci-libs/gsl-1.14-r2 required by (virtual/cblas-2.0::science, = ebuild=20 > scheduled for merge) >=20 > (app-admin/eselect-lapack-0.1::gentoo, installed) pulled in by > app-admin/eselect-lapack required by=20 > (sci-libs/lapack-atlas-3.9.23-r3::gentoo, installed) > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D > Any ideas? >=20 > Andrey >=20 Hi! You have to resolve the blockers: - Unmerge blas-atlas, lapack-atlas, eselect-{blas,cblas,lapack} - Upgrade world - Emerge sci-libs/atlas - Eselect your blas, cblas, lapack implementations - To be sure that all links properly, run revdep-rebuild If eselect fails complaining that some file is not a symlink, run: emerge -1 atlas gsl lapack-reference blas-reference Alter that eselecting should work without errors. If you do not want atlas versions of blas, cblas and lapack, you can skip the step where atlas is installed. Reinis