From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1MRkpc-0004KU-KU for garchives@archives.gentoo.org; Fri, 17 Jul 2009 10:38:24 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 00ACAE0343; Fri, 17 Jul 2009 10:38:24 +0000 (UTC) Received: from mailout.uni-due.de (mailout.uni-due.de [132.252.185.19]) by pigeon.gentoo.org (Postfix) with ESMTP id A7A27E0343 for ; Fri, 17 Jul 2009 10:38:23 +0000 (UTC) Received: from [132.252.170.153] (ce170153.zmb.uni-duisburg-essen.de [132.252.170.153]) (authenticated bits=0) by mailout.uni-due.de (8.13.1/8.13.1) with ESMTP id n6HAcMAJ011506 (version=TLSv1/SSLv3 cipher=DHE-RSA-AES256-SHA bits=256 verify=NOT) for ; Fri, 17 Jul 2009 12:38:22 +0200 Subject: Re: [gentoo-science] sci-biology/blast-db fails digest verification From: =?ISO-8859-1?Q?Bj=F6rn?= Thorwirth To: gentoo-science@lists.gentoo.org In-Reply-To: <17e1a1290907161220j340afffdkda7bdcf1d066a372@mail.gmail.com> References: <1247750772.17144.5.camel@localhost> <17e1a1290907161220j340afffdkda7bdcf1d066a372@mail.gmail.com> Content-Type: multipart/signed; micalg="pgp-sha1"; protocol="application/pgp-signature"; boundary="=-4HL1D2JyA3CzWIlrlrm0" Date: Fri, 17 Jul 2009 12:38:21 +0200 Message-Id: <1247827101.13131.3.camel@localhost> Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-science@lists.gentoo.org Reply-to: gentoo-science@lists.gentoo.org Mime-Version: 1.0 X-Mailer: Evolution 2.26.2 X-Spam-Scanned: SpamAssassin: 3.002004 - http://www.spamassassin.org X-Scanned-By: MIMEDefang 2.57 on 132.252.185.19 X-Archives-Salt: 598f0197-6d16-4925-83b4-18dd51955009 X-Archives-Hash: c31dc09a5321166518e11521a051c814 --=-4HL1D2JyA3CzWIlrlrm0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hi Andrey, Am Donnerstag, den 16.07.2009, 15:20 -0400 schrieb Andrey Kislyuk: > Hi Bjoern, >=20 > The blast-db package is actually a bit of a problem precisely because > of the issue you ran into and I'll probably remove it soon. Instead, > you should use the update_blastdb.pl script that comes with ncbi-tools > (/usr/share/doc/ncbi-tools*/html/blast/update_blastdb.pl) to download > the databases and keep them updated. >=20 > So what I intend to do in a future ncbi-tools release is move this > script into /usr/bin and write a tutorial on how to use it, linked > from the ncbi-tools elog output. I did it now with the redigest solution, but the use of the perl script seems to be the better way. Thanks for all your comments. Best regards, Bjoern =20 >=20 > Thanks >=20 > -ak >=20 > 2009/7/16 Bj=C3=B6rn Thorwirth : > > Hi! > > I just noticed this digest verification error. > > > > Best regards, > > > > Bjoern 'Thorwirth > > -- > > Bjoern Thorwirth, Zentrum f=C3=BCr Medizinische Biotechnologie, > > Universit=C3=A4t Duisburg-Essen, Universit=C3=A4tsstr. 2, 45117 Essen, = Germany > > phone +49 201 183-4026, bjoern.thorwirth@uni-due.de > > > > > > >=20 >=20 --=20 Bjoern Thorwirth, Zentrum f=C3=BCr Medizinische Biotechnologie, Universit=C3=A4t Duisburg-Essen, Universit=C3=A4tsstr. 2, 45117 Essen, Germ= any phone +49 201 183-4026, bjoern.thorwirth@uni-due.de --=-4HL1D2JyA3CzWIlrlrm0 Content-Type: application/pgp-signature; name="signature.asc" Content-Description: Dies ist ein digital signierter Nachrichtenteil -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.11 (GNU/Linux) iEYEABECAAYFAkpgVJ0ACgkQWBvj2vIEg/zD8ACgy4/1rBlUUGa+ri4Jba2cDqJt 5joAoLQ+E9Ta563PbllHCbaVaJS9eppB =n4g8 -----END PGP SIGNATURE----- --=-4HL1D2JyA3CzWIlrlrm0--