public inbox for gentoo-science@lists.gentoo.org
 help / color / mirror / Atom feed
From: "Björn Thorwirth" <bjoern.thorwirth@uni-due.de>
To: gentoo-science@lists.gentoo.org
Subject: Re: [gentoo-science] sci-biology/blast-db fails digest verification
Date: Fri, 17 Jul 2009 12:38:21 +0200	[thread overview]
Message-ID: <1247827101.13131.3.camel@localhost> (raw)
In-Reply-To: <17e1a1290907161220j340afffdkda7bdcf1d066a372@mail.gmail.com>

[-- Attachment #1: Type: text/plain, Size: 1405 bytes --]

Hi Andrey,


Am Donnerstag, den 16.07.2009, 15:20 -0400 schrieb Andrey Kislyuk:
> Hi Bjoern,
> 
> The blast-db package is actually a bit of a problem precisely because
> of the issue you ran into and I'll probably remove it soon. Instead,
> you should use the update_blastdb.pl script that comes with ncbi-tools
> (/usr/share/doc/ncbi-tools*/html/blast/update_blastdb.pl) to download
> the databases and keep them updated.
> 
> So what I intend to do in a future ncbi-tools release is move this
> script into /usr/bin and write a tutorial on how to use it, linked
> from the ncbi-tools elog output.
I did it now with the redigest solution, but the use of the perl script
seems to be the better way. Thanks for all your comments.

Best regards,

Bjoern

 
> 
> Thanks
> 
> -ak
> 
> 2009/7/16 Björn Thorwirth <bjoern.thorwirth@uni-due.de>:
> > Hi!
> > I just noticed this digest verification error.
> >
> > Best regards,
> >
> > Bjoern 'Thorwirth
> > --
> > Bjoern Thorwirth, Zentrum für Medizinische Biotechnologie,
> > Universität Duisburg-Essen, Universitätsstr. 2, 45117 Essen, Germany
> > phone +49 201 183-4026, bjoern.thorwirth@uni-due.de
> >
> >
> >
> 
> 
-- 
Bjoern Thorwirth, Zentrum für Medizinische Biotechnologie,
Universität Duisburg-Essen, Universitätsstr. 2, 45117 Essen, Germany
phone +49 201 183-4026, bjoern.thorwirth@uni-due.de



[-- Attachment #2: Dies ist ein digital signierter Nachrichtenteil --]
[-- Type: application/pgp-signature, Size: 198 bytes --]

      reply	other threads:[~2009-07-17 10:38 UTC|newest]

Thread overview: 7+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2009-07-16 13:26 [gentoo-science] sci-biology/blast-db fails digest verification Björn Thorwirth
2009-07-16 13:56 ` Neil Shephard
2009-07-16 15:51 ` Justin
2009-07-17  8:40   ` Łukasz P. Michalik
2009-07-17  9:40     ` Justin
2009-07-16 19:20 ` Andrey Kislyuk
2009-07-17 10:38   ` Björn Thorwirth [this message]

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=1247827101.13131.3.camel@localhost \
    --to=bjoern.thorwirth@uni-due.de \
    --cc=gentoo-science@lists.gentoo.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox