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From: Reinis Danne <rei4dan@gmail.com>
To: gentoo-science@lists.gentoo.org
Subject: [gentoo-science] [PATCH] sci-chemistry/openbabel-2.2.0-r1: New ebuild with doxyfile patch, #212212
Date: Thu, 12 Feb 2009 23:54:14 +0200
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X-Archives-Salt: bb031bc1-def8-48a5-9da2-39d62dbfa5b2
X-Archives-Hash: 3c3910c803c8f96939a69035bfc4d631
Added use flags doc (install API documentation) and zlib.
---
sci-chemistry/openbabel/ChangeLog | 11 +++
sci-chemistry/openbabel/Manifest | 5 ++
.../openbabel/files/openbabel-2.2.0-doxyfile.patch | 27 ++++++++
sci-chemistry/openbabel/metadata.xml | 15 ++++
sci-chemistry/openbabel/openbabel-2.2.0-r1.ebuild | 68 ++++++++++++++++++++
5 files changed, 126 insertions(+), 0 deletions(-)
create mode 100644 sci-chemistry/openbabel/ChangeLog
create mode 100644 sci-chemistry/openbabel/Manifest
create mode 100644 sci-chemistry/openbabel/files/openbabel-2.2.0-doxyfile.patch
create mode 100644 sci-chemistry/openbabel/metadata.xml
create mode 100644 sci-chemistry/openbabel/openbabel-2.2.0-r1.ebuild
diff --git a/sci-chemistry/openbabel/ChangeLog b/sci-chemistry/openbabel/ChangeLog
new file mode 100644
index 0000000..1ffe227
--- /dev/null
+++ b/sci-chemistry/openbabel/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-chemistry/openbabel
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*openbabel-2.2.0-r1 (10 Feb 2009)
+
+ 10 Feb 2009; Reinis Danne <rei4dan@gmail.com>
+ +files/openbabel-2.2.0-doxyfile.patch, +metadata.xml,
+ +openbabel-2.2.0-r1.ebuild:
+ Added openbabel-2.2.0-r1.ebuild with a patch for doxyfile, #212212
+
diff --git a/sci-chemistry/openbabel/Manifest b/sci-chemistry/openbabel/Manifest
new file mode 100644
index 0000000..30ad295
--- /dev/null
+++ b/sci-chemistry/openbabel/Manifest
@@ -0,0 +1,5 @@
+AUX openbabel-2.2.0-doxyfile.patch 1074 RMD160 26a22e205fde6c778ed19e961e676d99f0ffa2a7 SHA1 89c68eab7c2f144bf664f1c8abb7322430893658 SHA256 28d8b3e4730bdd347ddb1a0bff238bf52b2eb591d23d693812d99bb02c7190ec
+DIST openbabel-2.2.0.tar.gz 6127264 RMD160 ade8e65ab37278d9af3ff1b9cfb115437f52e0ea SHA1 5fdc084fb744d5dae4cd9ddbd52fe1f0c56c973b SHA256 a898b79336c7372c901bcc7e5f83db7b8e79f8e864be6a262f515b3e088bc607
+EBUILD openbabel-2.2.0-r1.ebuild 1484 RMD160 129bcff736c1c495e3381a53a181b412fe40e996 SHA1 6348606aa999c5cc434383e456d6dff46ced5316 SHA256 a34303fd5a0d918d4de612498f41f6a68dd25d070edf3324f4c0721e57485ec5
+MISC ChangeLog 363 RMD160 b2c4b7aea941258f4ba13d3fadafd17fbd2d1ec3 SHA1 9f7dc730012f98e2a5a9eca78a1c2b48decbfecb SHA256 059502c7cc3df61868b013a8670d3dc98b331959b54eb405bc76e4f45ffbff4e
+MISC metadata.xml 607 RMD160 d7e3f2502a60cc150c4c5d5f6840c15bfa7b966a SHA1 33b8b1fcb16b9f73d0fa61993bc159fa7b9f2927 SHA256 788449f6eea9025ca31211e134c48b2bf713e5120c132420896ec51b354f1807
diff --git a/sci-chemistry/openbabel/files/openbabel-2.2.0-doxyfile.patch b/sci-chemistry/openbabel/files/openbabel-2.2.0-doxyfile.patch
new file mode 100644
index 0000000..e54a530
--- /dev/null
+++ b/sci-chemistry/openbabel/files/openbabel-2.2.0-doxyfile.patch
@@ -0,0 +1,27 @@
+--- Doxyfile.orig 2008-07-01 20:55:40.000000000 +0300
++++ Doxyfile 2009-02-10 01:30:56.000000000 +0200
+@@ -752,13 +752,13 @@
+ # each generated HTML page. If it is left blank doxygen will generate a
+ # standard header.
+
+-HTML_HEADER = doc/api-header.html
++HTML_HEADER =
+
+ # The HTML_FOOTER tag can be used to specify a personal HTML footer for
+ # each generated HTML page. If it is left blank doxygen will generate a
+ # standard footer.
+
+-HTML_FOOTER = doc/api-footer.html
++HTML_FOOTER =
+
+ # The HTML_STYLESHEET tag can be used to specify a user-defined cascading
+ # style sheet that is used by each HTML page. It can be used to
+@@ -767,7 +767,7 @@
+ # the style sheet file to the HTML output directory, so don't put your own
+ # stylesheet in the HTML output directory as well, or it will be erased!
+
+-HTML_STYLESHEET = doc/api-style.css
++HTML_STYLESHEET =
+
+ # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
+ # files or namespaces will be aligned in HTML using tables. If set to
diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
new file mode 100644
index 0000000..79d6407
--- /dev/null
+++ b/sci-chemistry/openbabel/metadata.xml
@@ -0,0 +1,15 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+ <herd>sci-chemistry</herd>
+ <longdescription>
+ Open Babel is a chemical toolbox designed to speak the many languages of
+ chemical data. It's an open, collaborative project allowing anyone to
+ search, convert, analyze, or store data from molecular modeling, chemistry,
+ solid-state materials, biochemistry, or related areas.
+ </longdescription>
+ <use>
+ <flag name='doc'>Install API documentation</flag>
+ <flag name='zlib'>Enable zlib support</flag>
+ </use>
+</pkgmetadata>
diff --git a/sci-chemistry/openbabel/openbabel-2.2.0-r1.ebuild b/sci-chemistry/openbabel/openbabel-2.2.0-r1.ebuild
new file mode 100644
index 0000000..5116bba
--- /dev/null
+++ b/sci-chemistry/openbabel/openbabel-2.2.0-r1.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=1
+
+inherit eutils
+
+DESCRIPTION="interconverts file formats used in molecular modeling"
+HOMEPAGE="http://openbabel.sourceforge.net/"
+SRC_URI="mirror://sourceforge/openbabel/${P}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+SLOT="0"
+LICENSE="GPL-2"
+IUSE="doc +zlib"
+
+RDEPEND="!sci-chemistry/babel
+ >=dev-libs/libxml2-2.6.5
+ zlib? ( sys-libs/zlib )"
+
+DEPEND="${RDEPEND}
+ >=dev-libs/boost-1.33.1
+ dev-lang/perl
+ doc? ( app-doc/doxygen )"
+
+src_unpack() {
+ unpack ${A}
+ cd "${S}"
+
+ epatch "${FILESDIR}/${P}-doxyfile.patch" || die "Failed to apply ${P}-doxyfile.patch"
+}
+
+src_compile() {
+ econf \
+ --enable-static \
+ $(use_with zlib) \
+ || die "econf failed"
+ emake || die "emake failed"
+ if use doc ; then
+ emake docs || "make docs failed"
+ fi
+}
+
+src_test() {
+ emake check || die "make check failed"
+}
+
+src_install() {
+ emake DESTDIR="${D}" install || die "make install failed"
+ dodoc AUTHORS ChangeLog NEWS README THANKS
+ cd doc
+ dohtml *.html *.png
+ dodoc *.inc README* *.inc *.mol2
+ if use doc ;then
+ dodir /usr/share/doc/${PF}/API/html
+ insinto /usr/share/doc/${PF}/API/html
+ cd API/html
+ doins *
+ fi
+}
+
+pkg_postinst() {
+ echo
+ elog "This version of OpenBabel includes InChI version 1 (software version"
+ elog "1.02_beta). It does not produce Standard InChI/InChIKey."
+ elog "To get Standard InChI/InChIKey software version 1.02 must be used."
+}
--
1.6.0.6