From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1QnBhf-000113-9N for garchives@archives.gentoo.org; Sat, 30 Jul 2011 15:43:51 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 16B1D21C071; Sat, 30 Jul 2011 15:43:41 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id C5DEE21C071 for ; Sat, 30 Jul 2011 15:43:41 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id D33FC1B401D for ; Sat, 30 Jul 2011 15:43:40 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 3507C8003D for ; Sat, 30 Jul 2011 15:43:40 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/gbrowse/files/, sci-biology/gbrowse/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/gbrowse/ChangeLog sci-biology/gbrowse/files/fix-PNG-export.patch sci-biology/gbrowse/gbrowse-2.39.ebuild X-VCS-Directories: sci-biology/gbrowse/files/ sci-biology/gbrowse/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: f67b7b7711a847bed69fcec066f3aa4d3b42427d Date: Sat, 30 Jul 2011 15:43:40 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: 7dbbadc261e185e4e8776ff342e01722 commit: f67b7b7711a847bed69fcec066f3aa4d3b42427d Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Sat Jul 30 15:43:31 2011 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Sat Jul 30 15:43:31 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3Df67b7b77 sci-biology/gbrowse: add missing brackets cause a perl error while export= ing a PNG image (Portage version: 2.1.10.7/git/Linux i686, unsigned Manifest commit) --- sci-biology/gbrowse/ChangeLog | 5 +++++ sci-biology/gbrowse/files/fix-PNG-export.patch | 11 +++++++++++ sci-biology/gbrowse/gbrowse-2.39.ebuild | 3 ++- 3 files changed, 18 insertions(+), 1 deletions(-) diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLo= g index 5c2bd3e..a55fdce 100644 --- a/sci-biology/gbrowse/ChangeLog +++ b/sci-biology/gbrowse/ChangeLog @@ -3,6 +3,11 @@ # $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/Ch= angeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $ =20 30 Jul 2011; Martin Mokrejs + gbrowse-2.39.ebuild, +files/fix-PNG-export.patch: + sci-biology/gbrowse: add missing brackets cause a perl error while exp= orting + a PNG image gbrowse-2.39.ebuild files/fix-PNG-export.patch + + 30 Jul 2011; Martin Mokrejs gbrowse-2.39.ebuild, +files/destdir.patch: added support for --destdir, patch sent to upstream gbrowse-2.39.ebuil= d =20 diff --git a/sci-biology/gbrowse/files/fix-PNG-export.patch b/sci-biology= /gbrowse/files/fix-PNG-export.patch new file mode 100644 index 0000000..469f752 --- /dev/null +++ b/sci-biology/gbrowse/files/fix-PNG-export.patch @@ -0,0 +1,11 @@ +--- lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm.ori 2011-07-30 1= 7:14:28.000000000 +0200 ++++ lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm 2011-07-30 1= 7:13:13.000000000 +0200 +@@ -30,7 +30,7 @@ + sub setting { + my $self =3D shift; + my ($label,$option,@rest) =3D @_ >=3D 2 ? @_ : ('general',@_); +- $label =3D 'general' if lc $label eq 'general'; # buglet ++ $label =3D 'general' if lc($label) eq 'general'; # buglet + $self->SUPER::setting($label,$option,@rest); + } +=20 diff --git a/sci-biology/gbrowse/gbrowse-2.39.ebuild b/sci-biology/gbrows= e/gbrowse-2.39.ebuild index 35af68f..c0bcf25 100644 --- a/sci-biology/gbrowse/gbrowse-2.39.ebuild +++ b/sci-biology/gbrowse/gbrowse-2.39.ebuild @@ -90,7 +90,8 @@ src_prepare() { sed -i 's/return unless -t STDIN/return/' install_util/GBrowseInstall.p= m || die sed -i 's/process_/bp_process_/g' INSTALL || die epatch "${FILESDIR}"/GBrowseInstall.pm-"${PV}".patch || die "Failed to = apply GBrowseInstall.pm-"${PV}".patch" - epatch "${FILESDIR}"/destdir.patch || die "Failed to apply destdir.patc= h " + epatch "${FILESDIR}"/destdir.patch || die "Failed to apply destdir.patc= h" + epatch "${FILESDIR}"/fix-PNG-export.patch || die "Failed to apply fix-P= NG-export.patch" } =20 src_configure() {