[gentoo-commits] proj/sci:master commit in: sci-biology/gbrowse/files/, sci-biology/gbrowse/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     f67b7b7711a847bed69fcec066f3aa4d3b42427d
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sat Jul 30 15:43:31 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sat Jul 30 15:43:31 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f67b7b77

sci-biology/gbrowse: add missing brackets cause a perl error while exporting a PNG image

(Portage version: 2.1.10.7/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/gbrowse/ChangeLog                  |    5 +++++
 sci-biology/gbrowse/files/fix-PNG-export.patch |   11 +++++++++++
 sci-biology/gbrowse/gbrowse-2.39.ebuild        |    3 ++-
 3 files changed, 18 insertions(+), 1 deletions(-)

diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLog
index 5c2bd3e..a55fdce 100644
--- a/sci-biology/gbrowse/ChangeLog
+++ b/sci-biology/gbrowse/ChangeLog
@@ -3,6 +3,11 @@
 # $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $
 
   30 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  gbrowse-2.39.ebuild, +files/fix-PNG-export.patch:
+  sci-biology/gbrowse: add missing brackets cause a perl error while exporting
+  a PNG image gbrowse-2.39.ebuild files/fix-PNG-export.patch
+
+  30 Jul 2011; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
   gbrowse-2.39.ebuild, +files/destdir.patch:
   added support for --destdir, patch sent to upstream gbrowse-2.39.ebuild
 

diff --git a/sci-biology/gbrowse/files/fix-PNG-export.patch b/sci-biology/gbrowse/files/fix-PNG-export.patch
new file mode 100644
index 0000000..469f752
--- /dev/null
+++ b/sci-biology/gbrowse/files/fix-PNG-export.patch
@@ -0,0 +1,11 @@
+--- lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm.ori  2011-07-30 17:14:28.000000000 +0200
++++ lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm      2011-07-30 17:13:13.000000000 +0200
+@@ -30,7 +30,7 @@
+ sub setting {
+   my $self = shift;
+   my ($label,$option,@rest) = @_ >= 2 ? @_ : ('general',@_);
+-  $label = 'general' if lc $label eq 'general';  # buglet
++  $label = 'general' if lc($label) eq 'general';  # buglet
+   $self->SUPER::setting($label,$option,@rest);
+ }
+ 

diff --git a/sci-biology/gbrowse/gbrowse-2.39.ebuild b/sci-biology/gbrowse/gbrowse-2.39.ebuild
index 35af68f..c0bcf25 100644
--- a/sci-biology/gbrowse/gbrowse-2.39.ebuild
+++ b/sci-biology/gbrowse/gbrowse-2.39.ebuild
@@ -90,7 +90,8 @@ src_prepare() {
 	sed -i 's/return unless -t STDIN/return/' install_util/GBrowseInstall.pm || die
 	sed -i 's/process_/bp_process_/g' INSTALL || die
 	epatch "${FILESDIR}"/GBrowseInstall.pm-"${PV}".patch || die "Failed to apply GBrowseInstall.pm-"${PV}".patch"
-	epatch "${FILESDIR}"/destdir.patch || die "Failed to apply destdir.patch "
+	epatch "${FILESDIR}"/destdir.patch || die "Failed to apply destdir.patch"
+	epatch "${FILESDIR}"/fix-PNG-export.patch || die "Failed to apply fix-PNG-export.patch"
 }
 
 src_configure() {