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* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2011-02-26  6:51 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2011-02-26  6:51 UTC (permalink / raw
  To: gentoo-commits

commit:     f25808fc0d5097d0181544289eb38af6d00447a3
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Sat Feb 26 06:52:13 2011 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Sat Feb 26 06:52:34 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f25808fc

Live ebuild updated

(Portage version: 2.1.9.41/git/Linux i686, signed Manifest commit with key 0x914769A1)

---
 sci-mathematics/Macaulay2/ChangeLog             |    5 ++-
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   36 +++++++---------------
 2 files changed, 16 insertions(+), 25 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 107a4ca..1e0b146 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-mathematics/Macaulay2
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  26 Feb 2011; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Live ebuild updated
+
   12 Nov 2010; Thomas Kahle <tomka@gentoo.org>
   -files/1.4_pre-paths-of-external-programs.patch,
   -Macaulay2-1.3.1-r3.ebuild, -Macaulay2-1.4_pre.ebuild,

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 80ce6b0..3798d86 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
 EAPI="2"
 
-inherit autotools elisp-common eutils subversion
+inherit autotools elisp-common eutils flag-o-matic subversion
 
 IUSE="emacs optimization"
 
@@ -53,6 +53,7 @@ RESTRICT="mirror"
 
 pkg_setup () {
 		tc-export CC CPP CXX
+		append-cppflags "-I/usr/include/frobby"
 }
 
 src_prepare() {
@@ -60,31 +61,19 @@ src_prepare() {
 	# /usr/bin
 	epatch "${FILESDIR}"/${PV}-paths-of-external-programs.patch
 
-	# This is now a configure option:
-# 	if ! use optimization ; then
-# 		epatch "${FILESDIR}"/respect-CFLAGS.patch
-# 	fi
-
-## fixed in trunk as of 09/28/10
-# 	# The Posets-Package refers to a non-existent Graphs package.
-# 	# We dump it for now.
-# 	rm "${S}"/Macaulay2/packages/Posets.m2
-# 	sed -i "/  Posets/d" "${S}"/configure.ac
-# 	sed -i "/Posets/d" "${S}"/Macaulay2/packages/Macaulay2Doc/changes.m2
-
 	# Fixing make warnings about unavailable jobserver:
 	sed -i "s/\$(MAKE)/+ \$(MAKE)/g" "${S}"/distributions/Makefile.in
 
-	# Factory, and libfac are statically linked libraries which (in this flavor)
-	# are not used by any other program. We build them internally and don't install them
-	# Permission was granted to tomka by bicatali on IRC.
-	# Macaulay 2 in this version insists on a snapshot of boehm-gc that is not available elsewhere
-	# We will let it build its internal version for now.
+	# Factory, and libfac are statically linked libraries which (in this flavor) are not used by any
+	# other program. We build them internally and don't install them
 	mkdir "${S}/BUILD/tarfiles" || die "Creation of directory failed"
 	cp "${DISTDIR}/factory-3-1-1.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	cp "${DISTDIR}/libfac-3-1-1.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
+	# Macaulay 2 in this version insists on a snapshot of boehm-gc that is not available elsewhere
+	# We will let it build its internal version until >=boehm-gc-7.2_alpha5 is in in tree.  Note:
+	# The resulting QA warning is known.
 	cp "${DISTDIR}/gc-7.2alpha5-2010-09-03.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 
@@ -92,19 +81,18 @@ src_prepare() {
 }
 
 src_configure (){
-
 	# Recommended in bug #268064 Possibly unecessary
 	# but should not hurt anybody.
 	if ! use emacs; then
 		tags="ctags"
 	fi
 
-	CPPFLAGS="-I/usr/include/frobby" \
-		./configure --prefix="${D}/usr" \
+	# configure instead of econf to enable install with --prefix
+	./configure --prefix="${D}/usr" \
 		--disable-encap \
 		--disable-strip \
 		$(use_enable optimization optimize) \
-		--enable-build-libraries="factory libfac" \
+		--enable-build-libraries="factory gc libfac" \
 		--with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
 		|| die "failed to configure Macaulay"
 }
@@ -129,7 +117,6 @@ src_install () {
 
 	# Remove emacs files and install them in the
 	# correct place if use emacs
-
 	rm -rf "${D}"/usr/share/emacs/site-lisp
 	if use emacs; then
 		cd "${S}/Macaulay2/emacs"
@@ -146,6 +133,7 @@ pkg_postinst() {
 		elog "in order to set it to F12 (or choose a different one)."
 	fi
 }
+
 pkg_postrm() {
 	use emacs && elisp-site-regen
 }



^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2011-03-07 12:01 Justin Lecher
  0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2011-03-07 12:01 UTC (permalink / raw
  To: gentoo-commits

commit:     1b69819f76376d794d9908ceafb10f65a8fa9290
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Mar  7 11:30:10 2011 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Mar  7 11:30:10 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1b69819f

Correct Slots for gtk 3 introduction to tree

(Portage version: 2.2.0_alpha26/git/Linux x86_64, signed Manifest commit with key 70EB7916)

---
 sci-mathematics/Macaulay2/ChangeLog                |    4 +++
 .../Macaulay2/Macaulay2-1.3.1-r4.ebuild            |   21 ++++++++++---------
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild    |   10 ++++----
 3 files changed, 20 insertions(+), 15 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 1e0b146..1b3395e 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  07 Mar 2011; Justin Lecher <jlec@gentoo.org> Macaulay2-1.3.1-r4.ebuild,
+  Macaulay2-9999.ebuild:
+  Correct Slots for gtk 3 introduction to tree
+
   26 Feb 2011; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Live ebuild updated
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-1.3.1-r4.ebuild b/sci-mathematics/Macaulay2/Macaulay2-1.3.1-r4.ebuild
index e8fe720..6df19f4 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-1.3.1-r4.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-1.3.1-r4.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -6,27 +6,28 @@ EAPI="2"
 
 inherit autotools elisp-common eutils
 
-IUSE="emacs optimization"
-
 MY_REV="r10737"
-DESCRIPTION="research tool for commutative algebra and algebraic geometry"
-SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
-SRC_URI="${SRC_BASE}/SourceCode/Macaulay2-${PV}-${MY_REV}.bz2 -> ${P}.tar.bz2
-		 ${SRC_BASE}/OtherSourceCode/1.3/factory-3-1-0.tar.gz
-		 ${SRC_BASE}/OtherSourceCode/1.3/libfac-3-1-0.tar.gz"
 
+DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
+SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
+SRC_URI="
+	${SRC_BASE}/SourceCode/Macaulay2-${PV}-${MY_REV}.bz2 -> ${P}.tar.bz2
+	${SRC_BASE}/OtherSourceCode/1.3/factory-3-1-0.tar.gz
+	${SRC_BASE}/OtherSourceCode/1.3/libfac-3-1-0.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS="~amd64 ~x86"
+IUSE="emacs optimization"
 
-DEPEND="sys-libs/gdbm
+DEPEND="
+	sys-libs/gdbm
 	>=dev-libs/ntl-5.5.2
 	>=dev-libs/boehm-gc-7.1
 	>=sci-mathematics/pari-2.3.4[gmp]
 	>=sys-libs/readline-6.0
-	dev-libs/libxml2
+	dev-libs/libxml2:2
 	sci-mathematics/frobby
 	sci-mathematics/4ti2
 	<sci-mathematics/normaliz-2.5

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 3798d86..fd77a71 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -10,23 +10,23 @@ IUSE="emacs optimization"
 
 ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 
-DESCRIPTION="research tool for commutative algebra and algebraic geometry"
+DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
+HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
 SRC_URI="${SRC_BASE}/OtherSourceCode/1.3/factory-3-1-1.tar.gz
 		 ${SRC_BASE}/OtherSourceCode/1.3/libfac-3-1-1.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Extra/gc-7.2alpha5-2010-09-03.tar.gz"
 
-HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
-
 SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS=""
 
-DEPEND="sys-libs/gdbm
+DEPEND="
+	sys-libs/gdbm
 	>=dev-libs/ntl-5.5.2
 	>=sci-mathematics/pari-2.3.4[gmp]
 	>=sys-libs/readline-6.1
-	dev-libs/libxml2
+	dev-libs/libxml2:2
 	sci-mathematics/frobby
 	sci-mathematics/4ti2
 	sci-mathematics/nauty



^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2011-08-09 11:46 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2011-08-09 11:46 UTC (permalink / raw
  To: gentoo-commits

commit:     4548831f683bef8d9da94113f8a39c4fddbb371a
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Tue Aug  9 11:46:16 2011 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Tue Aug  9 11:46:36 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=4548831f

adjusting boehm-gc source file

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    8 ++++----
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 80813e5..e3e7937 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  09 Aug 2011; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  adjusting boehm-gc source file
+
   08 Jul 2011; Thomas Kahle <tomka@gentoo.org>
   -files/1.4-paths-of-external-programs.patch, -Macaulay2-1.3.1-r4.ebuild,
   Macaulay2-9999.ebuild, -files/respect-CFLAGS.patch:

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 67c914a..1ea1cde 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -15,7 +15,7 @@ HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
 SRC_URI="${SRC_BASE}/OtherSourceCode/1.3/factory-3-1-1.tar.gz
 		 ${SRC_BASE}/OtherSourceCode/1.3/libfac-3-1-1.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/gc-7.2alpha5-2010-09-03.tar.gz"
+		 http://www.math.uiuc.edu/Macaulay2/Extra/gc-7.2alpha7-2011-07-25.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
@@ -71,10 +71,10 @@ src_prepare() {
 		|| die "copy failed"
 	cp "${DISTDIR}/libfac-3-1-1.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	# Macaulay 2 in this version insists on a snapshot of boehm-gc that is not available elsewhere
-	# We will let it build its internal version until >=boehm-gc-7.2_alpha5 is in in tree.  Note:
+	# Macaulay 2 insists on a snapshot of boehm-gc that is not available elsewhere
+	# We will let it build its internal version for now.  Note:
 	# The resulting QA warning is known.
-	cp "${DISTDIR}/gc-7.2alpha5-2010-09-03.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/gc-7.2alpha7-2011-07-25.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 
 	eautoreconf



^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2011-09-25  7:27 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2011-09-25  7:27 UTC (permalink / raw
  To: gentoo-commits

commit:     8b299782687f610304db15758edd2638d6e58813
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Thu Sep  8 18:30:38 2011 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Sun Sep 25 07:27:46 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=8b299782

Fix tests better

---
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    4 +++-
 1 files changed, 3 insertions(+), 1 deletions(-)

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 1ea1cde..e4aa03c 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -108,7 +108,9 @@ src_compile() {
 }
 
 src_test() {
-	emake check || die "tests failed"
+	# No parallel tests yet & Need to increase the time
+	# limit for long running tests in Schubert2 to pass
+	emake TLIMIT=550 -j1 check || die "tests failed"
 }
 
 src_install () {



^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-03-01 16:33 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-03-01 16:33 UTC (permalink / raw
  To: gentoo-commits

commit:     ec4d0cbf48fd6686e20d99708da842f1b9148935
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Thu Mar  1 16:32:43 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Thu Mar  1 16:33:06 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ec4d0cbf

Update deps in M2 live ebuild

---
 sci-mathematics/Macaulay2/ChangeLog             |    5 ++++-
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   21 ++++++++++++++-------
 2 files changed, 18 insertions(+), 8 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index ab9d8e8..069f906 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-mathematics/Macaulay2
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  01 Mar 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Update deps in M2-live ebuild
+
   25 Sep 2011; Thomas Kahle <tomka@gentoo.org>
   files/9999-paths-of-external-programs.patch, Macaulay2-9999.ebuild:
   Fix live ebuild

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index e313f60..6839fc3 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -10,12 +10,17 @@ IUSE="emacs optimization"
 
 ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 
+BOEHM_GC="gc-7.3alpha1.2012.01.23"
+FACTORY="factory-3-1-4"
+LIBFAC="libfac-3-1-4"
+
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
-SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/libfac-3-1-3.tar.gz
-		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-3-1-3.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/gc-7.2alpha7-2011-07-25.tar.gz"
+SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${FACTORY}.tar.gz
+		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
+		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${LIBFAC}.tar.gz
+		 http://www.math.uiuc.edu/Macaulay2/Extra/${BOEHM_GC}.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
@@ -67,14 +72,16 @@ src_prepare() {
 	# Factory, and libfac are statically linked libraries which (in this flavor) are not used by any
 	# other program. We build them internally and don't install them
 	mkdir "${S}/BUILD/tarfiles" || die "Creation of directory failed"
-	cp "${DISTDIR}/factory-3-1-3.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/${FACTORY}.tar.gz" "${S}/BUILD/tarfiles/" \
+		|| die "copy failed"
+	cp "${DISTDIR}/factory-gftables.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	cp "${DISTDIR}/libfac-3-1-3.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/${LIBFAC}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	# Macaulay 2 insists on a snapshot of boehm-gc that is not available elsewhere
 	# We will let it build its internal version for now.  Note:
 	# The resulting QA warning is known.
-	cp "${DISTDIR}/gc-7.2alpha7-2011-07-25.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/${BOEHM_GC}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 
 	eautoreconf



^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-05-02 16:15 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-05-02 16:15 UTC (permalink / raw
  To: gentoo-commits

commit:     e5ec811456ef12e63e5368df91c90454044f57cb
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Wed May  2 16:15:01 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Wed May  2 16:15:08 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e5ec8114

Fix live ebuild

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    8 +++++---
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 069f906..f82041a 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  02 May 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Fix live ebuild
+
   01 Mar 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Update deps in M2-live ebuild
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 6839fc3..f8414ab 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -11,16 +11,18 @@ IUSE="emacs optimization"
 ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 
 BOEHM_GC="gc-7.3alpha1.2012.01.23"
-FACTORY="factory-3-1-4"
+FACTORY="factory-3-1-4-1"
 LIBFAC="libfac-3-1-4"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
-SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${FACTORY}.tar.gz
+SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
-		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${LIBFAC}.tar.gz
+		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Extra/${BOEHM_GC}.tar.gz"
+# Somebody changed the tarball after release... grrr.
+#		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${FACTORY}.tar.gz
 
 SLOT="0"
 LICENSE="GPL-2"



^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-07-30 12:39 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-07-30 12:39 UTC (permalink / raw
  To: gentoo-commits

commit:     136173a1696b90886f9399dbcd3f469b4498455f
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Mon Jul 30 12:39:26 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Mon Jul 30 12:39:42 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=136173a1

Update live ebuild

---
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    8 +++++++-
 1 files changed, 7 insertions(+), 1 deletions(-)

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index f8414ab..49cab70 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -10,7 +10,10 @@ IUSE="emacs optimization"
 
 ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 
+# Those packages will be built internally, Macaulay2 always wants the
+# latest and greatest
 BOEHM_GC="gc-7.3alpha1.2012.01.23"
+GCLIBATOMIC_OPS="gc-libatomic_ops-7.3alpha2"
 FACTORY="factory-3-1-4-1"
 LIBFAC="libfac-3-1-4"
 
@@ -20,7 +23,8 @@ SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
 SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/${BOEHM_GC}.tar.gz"
+		 http://www.math.uiuc.edu/Macaulay2/Extra/${BOEHM_GC}.tar.gz
+		 http://www.math.uiuc.edu/Macaulay2/Extra/${GCLIBATOMIC_OPS}.tar.gz"
 # Somebody changed the tarball after release... grrr.
 #		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${FACTORY}.tar.gz
 
@@ -85,6 +89,8 @@ src_prepare() {
 	# The resulting QA warning is known.
 	cp "${DISTDIR}/${BOEHM_GC}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
+	cp "${DISTDIR}/${GCLIBATOMIC_OPS}.tar.gz" "${S}/BUILD/tarfiles/" \
+		|| die "copy failed"
 
 	eautoreconf
 }


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-08-06  7:23 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-08-06  7:23 UTC (permalink / raw
  To: gentoo-commits

commit:     c39c7ec80776e3d0091f77a540c574f8b9c0202d
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Mon Aug  6 07:23:29 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Mon Aug  6 07:23:47 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=c39c7ec8

Update live dependencies

(Portage version: 2.1.11.9/git/Linux x86_64, unsigned Manifest commit)

---
 sci-mathematics/Macaulay2/ChangeLog             |    4 +++-
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   19 +++++++++----------
 2 files changed, 12 insertions(+), 11 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index f82041a..0cd176d 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  06 Aug 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Update live dependencies
+
   02 May 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Fix live ebuild
 
@@ -137,4 +140,3 @@
   +metadata.xml +files/70Macaulay2-gentoo.el +files/patch-3.1.0b
 
   Intial import (Bug #246095)
-

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 49cab70..0ef50e6 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -11,9 +11,9 @@ IUSE="emacs optimization"
 ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 
 # Those packages will be built internally, Macaulay2 always wants the
-# latest and greatest
-BOEHM_GC="gc-7.3alpha1.2012.01.23"
+# latest and greatest (mostly git snapshots)
 GCLIBATOMIC_OPS="gc-libatomic_ops-7.3alpha2"
+GC="gc-20120729"
 FACTORY="factory-3-1-4-1"
 LIBFAC="libfac-3-1-4"
 
@@ -23,10 +23,8 @@ SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
 SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/${BOEHM_GC}.tar.gz
+		 http://www.math.uiuc.edu/Macaulay2/Extra/${GC}.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Extra/${GCLIBATOMIC_OPS}.tar.gz"
-# Somebody changed the tarball after release... grrr.
-#		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${FACTORY}.tar.gz
 
 SLOT="0"
 LICENSE="GPL-2"
@@ -84,10 +82,10 @@ src_prepare() {
 		|| die "copy failed"
 	cp "${DISTDIR}/${LIBFAC}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	# Macaulay 2 insists on a snapshot of boehm-gc that is not available elsewhere
-	# We will let it build its internal version for now.  Note:
-	# The resulting QA warning is known.
-	cp "${DISTDIR}/${BOEHM_GC}.tar.gz" "${S}/BUILD/tarfiles/" \
+	# Macaulay 2 insists on a git snapshot of gc We will let it build
+	# its internal version for now.  Note: The resulting QA warning is
+	# known.
+	cp "${DISTDIR}/${GC}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	cp "${DISTDIR}/${GCLIBATOMIC_OPS}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
@@ -114,7 +112,8 @@ src_configure (){
 
 src_compile() {
 	# Parallel build not supported yet
-	emake -j1 || die "failed to build Macaulay"
+	# For trunk builds, let's ignore example errors
+	emake IgnoreExampleErrors=true -j1 || die "failed to build Macaulay"
 
 	if use emacs; then
 		cd "${S}/Macaulay2/emacs"


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-08-19  9:17 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-08-19  9:17 UTC (permalink / raw
  To: gentoo-commits

commit:     eaadb67f97fbecd4e23e5b177c82c2c7e9e99b4e
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Sun Aug 19 09:16:37 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Sun Aug 19 09:16:58 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=eaadb67f

update to EAPI=4, cosmetics, deps

(Portage version: 2.1.11.10/git/Linux x86_64, unsigned Manifest commit)

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 ++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   36 ++++++++++------------
 2 files changed, 19 insertions(+), 20 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 0cd176d..16e439c 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  19 Aug 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  update to EAPI=4, cosmetics, deps
+
   06 Aug 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Update live dependencies
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 0ef50e6..6e7dfc1 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -2,7 +2,7 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI="2"
+EAPI=4
 
 inherit autotools elisp-common eutils flag-o-matic subversion
 
@@ -10,10 +10,7 @@ IUSE="emacs optimization"
 
 ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 
-# Those packages will be built internally, Macaulay2 always wants the
-# latest and greatest (mostly git snapshots)
-GCLIBATOMIC_OPS="gc-libatomic_ops-7.3alpha2"
-GC="gc-20120729"
+# Those packages will be built internally.
 FACTORY="factory-3-1-4-1"
 LIBFAC="libfac-3-1-4"
 
@@ -23,8 +20,7 @@ SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
 SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/${GC}.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/${GCLIBATOMIC_OPS}.tar.gz"
+		 http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
@@ -51,6 +47,7 @@ DEPEND="
 	dev-util/ctags
 	sys-libs/ncurses
 	sys-process/time
+	>dev-libs/boehm-gc-7.1
 	emacs? ( virtual/emacs )"
 RDEPEND="${DEPEND}"
 
@@ -82,12 +79,10 @@ src_prepare() {
 		|| die "copy failed"
 	cp "${DISTDIR}/${LIBFAC}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	# Macaulay 2 insists on a git snapshot of gc We will let it build
-	# its internal version for now.  Note: The resulting QA warning is
-	# known.
-	cp "${DISTDIR}/${GC}.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
-	cp "${DISTDIR}/${GCLIBATOMIC_OPS}.tar.gz" "${S}/BUILD/tarfiles/" \
+	# Macaulay2 developers want that gtest is built internally because
+	# the documentation says it may fail if build with options not the
+	# same as the tested program.
+	cp "${DISTDIR}/gtest-1.6.0.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 
 	eautoreconf
@@ -105,38 +100,39 @@ src_configure (){
 		--disable-encap \
 		--disable-strip \
 		$(use_enable optimization optimize) \
-		--enable-build-libraries="factory gc libfac" \
+		--enable-build-libraries="factory libfac" \
 		--with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
 		|| die "failed to configure Macaulay"
 }
 
 src_compile() {
 	# Parallel build not supported yet
-	# For trunk builds, let's ignore example errors
-	emake IgnoreExampleErrors=true -j1 || die "failed to build Macaulay"
+	# emake -j1
+	# For trunk builds we may wish to ignore example errors
+	emake IgnoreExampleErrors=true -j1
 
 	if use emacs; then
 		cd "${S}/Macaulay2/emacs"
-		elisp-compile *.el || die "elisp-compile failed"
+		elisp-compile *.el
 	fi
 }
 
 src_test() {
 	# No parallel tests yet & Need to increase the time
 	# limit for long running tests in Schubert2 to pass
-	emake TLIMIT=550 -j1 check || die "tests failed"
+	emake TLIMIT=550 -j1 check
 }
 
 src_install () {
 	# Parallel install not supported yet
-	emake -j1 install || die "install failed"
+	emake -j1 install
 
 	# Remove emacs files and install them in the
 	# correct place if use emacs
 	rm -rf "${D}"/usr/share/emacs/site-lisp
 	if use emacs; then
 		cd "${S}/Macaulay2/emacs"
-		elisp-install ${PN} *.elc *.el || die "elisp-install failed"
+		elisp-install ${PN} *.elc *.el
 		elisp-site-file-install "${FILESDIR}/${SITEFILE}"
 	fi
 }


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-10-12  0:16 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-10-12  0:16 UTC (permalink / raw
  To: gentoo-commits

commit:     66b887a792880f4bdc624f74b74daf7893ef2113
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 12 00:16:30 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Fri Oct 12 00:16:41 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=66b887a7

improve live ebuild

(Portage version: 2.1.11.25/git/Linux x86_64)

---
 sci-mathematics/Macaulay2/ChangeLog             |    4 ++++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    2 ++
 sci-mathematics/Macaulay2/metadata.xml          |    2 +-
 3 files changed, 7 insertions(+), 1 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 16e439c..597b087 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  12 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild,
+  metadata.xml:
+  improve live ebuild
+
   19 Aug 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   update to EAPI=4, cosmetics, deps
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 6e7dfc1..56001b2 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -60,6 +60,8 @@ RESTRICT="mirror"
 pkg_setup () {
 		tc-export CC CPP CXX
 		append-cppflags "-I/usr/include/frobby"
+		# gtest needs python:2
+		python_set_active_version 2
 }
 
 src_prepare() {

diff --git a/sci-mathematics/Macaulay2/metadata.xml b/sci-mathematics/Macaulay2/metadata.xml
index bef9557..575e757 100644
--- a/sci-mathematics/Macaulay2/metadata.xml
+++ b/sci-mathematics/Macaulay2/metadata.xml
@@ -7,7 +7,7 @@
   <name>Thomas Kahle</name>
 </maintainer>
 <use>
-  <flag name="optimization">Accept upstream's choices for -O option, i.e. -O3 almost everywhere.</flag>
+  <flag name="optimization">Disable to build with -O0 for debugging.</flag>
 </use>
 <longdescription lang="en">
   Macaulay2 is a research tool for algraic geometry and commutative


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-10-12 21:36 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-10-12 21:36 UTC (permalink / raw
  To: gentoo-commits

commit:     75bb58a4766e467e83339d505e026ee58f175325
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 12 21:34:31 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Fri Oct 12 21:36:12 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=75bb58a4

Fix deps of live ebuild

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    1 +
 2 files changed, 4 insertions(+), 0 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 597b087..a8de11c 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  12 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Fix deps of live ebuild
+
   12 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild,
   metadata.xml:
   improve live ebuild

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 56001b2..67c1fee 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -48,6 +48,7 @@ DEPEND="
 	sys-libs/ncurses
 	sys-process/time
 	>dev-libs/boehm-gc-7.1
+	dev-libs/libatomic_ops
 	emacs? ( virtual/emacs )"
 RDEPEND="${DEPEND}"
 


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-10-12 22:08 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-10-12 22:08 UTC (permalink / raw
  To: gentoo-commits

commit:     851355a6681601bd967ad5b263c57c35fa5e10ca
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Fri Oct 12 22:08:37 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Fri Oct 12 22:08:37 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=851355a6

bump boehm-gc, fix python

(Portage version: 2.1.11.26/git/Linux x86_64)

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    4 ++--
 2 files changed, 5 insertions(+), 2 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index a8de11c..d5348f6 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -3,6 +3,9 @@
 # $Header: $
 
   12 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  bump boehm-gc, fix python
+
+  12 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Fix deps of live ebuild
 
   12 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild,

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 67c1fee..20a80b2 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=4
 
-inherit autotools elisp-common eutils flag-o-matic subversion
+inherit autotools elisp-common eutils flag-o-matic python subversion
 
 IUSE="emacs optimization"
 
@@ -47,7 +47,7 @@ DEPEND="
 	dev-util/ctags
 	sys-libs/ncurses
 	sys-process/time
-	>dev-libs/boehm-gc-7.1
+	>=dev-libs/boehm-gc-7.2_alpha6
 	dev-libs/libatomic_ops
 	emacs? ( virtual/emacs )"
 RDEPEND="${DEPEND}"


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-10-24 19:23 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-10-24 19:23 UTC (permalink / raw
  To: gentoo-commits

commit:     90f9112aaf15b751b7a7da0696f46e00ed88382a
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Wed Oct 24 19:23:11 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Wed Oct 24 19:23:28 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=90f9112a

Update M2 live ebuild

Package-Manager: portage-2.1.11.30

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   21 +++++++++++++++------
 2 files changed, 18 insertions(+), 6 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index d5348f6..14895a0 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  24 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Update M2 live ebuild
+
   12 Oct 2012; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   bump boehm-gc, fix python
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 20a80b2..a9ae846 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -6,7 +6,7 @@ EAPI=4
 
 inherit autotools elisp-common eutils flag-o-matic python subversion
 
-IUSE="emacs optimization"
+IUSE="debug emacs optimization"
 
 ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
 
@@ -20,12 +20,18 @@ SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
 SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
+		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/mpfr-3.0.1.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz"
 
 SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS=""
 
+# Macaulay2 is broken with >=mpfr-3.1, to not force a downgrade on users
+# we let it built an internal copy :(
+# This dep was removed:
+# >=dev-libs/mpfr-3.0.0
+
 DEPEND="
 	sys-libs/gdbm
 	>=dev-libs/ntl-5.5.2
@@ -37,7 +43,6 @@ DEPEND="
 	sci-mathematics/nauty
 	>=sci-mathematics/normaliz-2.7
 	sci-mathematics/gfan
-	>=dev-libs/mpfr-3.0.0
 	>=sci-libs/mpir-2.1.1[cxx]
 	sci-libs/cdd+
 	sci-libs/cddlib
@@ -47,7 +52,7 @@ DEPEND="
 	dev-util/ctags
 	sys-libs/ncurses
 	sys-process/time
-	>=dev-libs/boehm-gc-7.2_alpha6
+	>=dev-libs/boehm-gc-7.2_alpha6[threads]
 	dev-libs/libatomic_ops
 	emacs? ( virtual/emacs )"
 RDEPEND="${DEPEND}"
@@ -87,6 +92,9 @@ src_prepare() {
 	# same as the tested program.
 	cp "${DISTDIR}/gtest-1.6.0.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
+	# Temporary internal build of mpfr-3.0:
+	cp "${DISTDIR}/mpfr-3.0.1.tar.gz" "${S}/BUILD/tarfiles/" \
+		|| die "copy failed"
 
 	eautoreconf
 }
@@ -103,16 +111,17 @@ src_configure (){
 		--disable-encap \
 		--disable-strip \
 		$(use_enable optimization optimize) \
-		--enable-build-libraries="factory libfac" \
+		$(use_enable debug) \
+		--enable-build-libraries="factory libfac mpfr" \
 		--with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
 		|| die "failed to configure Macaulay"
 }
 
 src_compile() {
 	# Parallel build not supported yet
-	# emake -j1
+	emake -j1
 	# For trunk builds we may wish to ignore example errors
-	emake IgnoreExampleErrors=true -j1
+	# emake IgnoreExampleErrors=true -j1
 
 	if use emacs; then
 		cd "${S}/Macaulay2/emacs"


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2012-11-13  2:24 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2012-11-13  2:24 UTC (permalink / raw
  To: gentoo-commits

commit:     32beca628f4f65b13fbd4a7de9126abab84bdf84
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Tue Nov 13 02:24:36 2012 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Tue Nov 13 02:24:44 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=32beca62

Update live ebuild for latest Normaliz

---
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   23 +++++++++++++++++++----
 1 files changed, 19 insertions(+), 4 deletions(-)

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 72b4584..a2b1127 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -16,12 +16,13 @@ LIBFAC="libfac-3-1-4"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
-SRC_BASE="http://www.math.uiuc.edu/${PN}/Downloads/"
 SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/mpfr-3.0.1.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz"
+		 http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz
+		 http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
+# Need normaliz for an up to date normaliz.m2
 
 SLOT="0"
 LICENSE="GPL-2"
@@ -41,7 +42,7 @@ DEPEND="
 	sci-mathematics/frobby
 	sci-mathematics/4ti2
 	sci-mathematics/nauty
-	>=sci-mathematics/normaliz-2.7
+	>=sci-mathematics/normaliz-2.8
 	sci-mathematics/gfan
 	>=sci-libs/mpir-2.1.1[cxx]
 	sci-libs/cdd+
@@ -55,7 +56,11 @@ DEPEND="
 	>=dev-libs/boehm-gc-7.2_alpha6[threads]
 	dev-libs/libatomic_ops
 	emacs? ( virtual/emacs )
-	virtual/pkgconfig"
+	virtual/pkgconfig
+	app-arch/unzip
+	app-text/dos2unix"
+# Unzip and dos2unix just for normaliz
+
 RDEPEND="${DEPEND}"
 
 SITEFILE=70Macaulay2-gentoo.el
@@ -64,6 +69,11 @@ S="${WORKDIR}/${PN}-${PV}"
 
 RESTRICT="mirror"
 
+src_unpack (){
+	unpack "Normaliz2.8.zip"
+	subversion_src_unpack
+}
+
 pkg_setup () {
 		tc-export CC CPP CXX
 		append-cppflags "-I/usr/include/frobby"
@@ -72,6 +82,11 @@ pkg_setup () {
 }
 
 src_prepare() {
+	# Put updated Normaliz.m2 in place
+	cp "${WORKDIR}/Normaliz2.8/Macaulay2/Normaliz.m2" \
+		"${S}/Macaulay2/packages" || die
+	dos2unix ${S}/Macaulay2/packages/Normaliz.m2 || die
+
 	# Patching .m2 files to look for external programs in
 	# /usr/bin
 	epatch "${FILESDIR}"/${PV}-paths-of-external-programs.patch


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2013-01-10  9:18 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2013-01-10  9:18 UTC (permalink / raw
  To: gentoo-commits

commit:     143d931a0dd74fabff1cf16994ca917044ceeb28
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Thu Jan 10 09:17:49 2013 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Thu Jan 10 09:18:13 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=143d931a

migrate to git-2 eclass, fix lapack support

Package-Manager: portage-2.1.11.38

---
 sci-mathematics/Macaulay2/ChangeLog             |    5 ++++-
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   17 +++++++++++------
 2 files changed, 15 insertions(+), 7 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 2619c70..f97fdc7 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-mathematics/Macaulay2
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2013; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  migrate to git-2 eclass, fix lapack support
+
   30 Oct 2012; Thomas Kahle <tomka@gentoo.org> +files/9999-lapack.patch,
   Macaulay2-9999.ebuild:
   Fix linking against arbitrary lapack implementation

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index a2b1127..0080340 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -1,14 +1,14 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
 EAPI=4
 
-inherit autotools elisp-common eutils flag-o-matic python subversion
+inherit autotools elisp-common eutils flag-o-matic git-2 python
 
 IUSE="debug emacs optimization"
 
-ESVN_REPO_URI="svn://svn.macaulay2.com/Macaulay2/trunk/M2"
+EGIT_REPO_URI="git://github.com/Macaulay2/M2.git"
 
 # Those packages will be built internally.
 FACTORY="factory-3-1-4-1"
@@ -65,13 +65,17 @@ RDEPEND="${DEPEND}"
 
 SITEFILE=70Macaulay2-gentoo.el
 
-S="${WORKDIR}/${PN}-${PV}"
+S="${WORKDIR}/${PN}-${PV}/"
 
 RESTRICT="mirror"
 
 src_unpack (){
 	unpack "Normaliz2.8.zip"
-	subversion_src_unpack
+	git-2_src_unpack
+	# Undo one level of directory until git allows to checkout
+	# subdirectories
+	mv "${S}"/M2/* "${S}" || die
+	rmdir "${S}"/M2 || die
 }
 
 pkg_setup () {
@@ -126,7 +130,8 @@ src_configure (){
 	fi
 
 	# configure instead of econf to enable install with --prefix
-	./configure --prefix="${D}/usr" \
+	./configure LIBS="$(pkg-config --libs lapack)" \
+		--prefix="${D}/usr" \
 		--disable-encap \
 		--disable-strip \
 		$(use_enable optimization optimize) \


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2013-02-18 15:57 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2013-02-18 15:57 UTC (permalink / raw
  To: gentoo-commits

commit:     90feafe1f687ca6e95335828361b94ab792ac2bc
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 18 15:56:35 2013 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Mon Feb 18 15:57:01 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=90feafe1

Update live ebuild

Package-Manager: portage-2.1.11.52

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   19 +++++++++----------
 2 files changed, 12 insertions(+), 10 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 2237d2e..3505a7e 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -5,6 +5,9 @@
   18 Feb 2013; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Update live ebuild
 
+  18 Feb 2013; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Update live ebuild
+
   10 Jan 2013; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   migrate to git-2 eclass, fix lapack support
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 0bc34ec..3db0821 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -27,7 +27,13 @@ SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS=""
 
-DEPEND="
+DEPEND="sys-process/time
+	virtual/pkgconfig
+	app-arch/unzip
+	app-text/dos2unix"
+# Unzip and dos2unix just for normaliz
+
+RDEPEND="
 	sys-libs/gdbm
 	dev-libs/ntl
 	sci-mathematics/pari[gmp]
@@ -47,16 +53,9 @@ DEPEND="
 	virtual/lapack
 	dev-util/ctags
 	sys-libs/ncurses
-	sys-process/time
 	>=dev-libs/boehm-gc-7.2_alpha6[threads]
 	dev-libs/libatomic_ops
-	emacs? ( virtual/emacs )
-	virtual/pkgconfig
-	app-arch/unzip
-	app-text/dos2unix"
-# Unzip and dos2unix just for normaliz
-
-RDEPEND="${DEPEND}"
+	emacs? ( virtual/emacs )"
 
 SITEFILE=70Macaulay2-gentoo.el
 
@@ -84,7 +83,7 @@ src_prepare() {
 	# Put updated Normaliz.m2 in place
 	cp "${WORKDIR}/Normaliz2.8/Macaulay2/Normaliz.m2" \
 		"${S}/Macaulay2/packages" || die
-	dos2unix ${S}/Macaulay2/packages/Normaliz.m2 || die
+	dos2unix "${S}/Macaulay2/packages/Normaliz.m2" || die
 
 	# Patching .m2 files to look for external programs in
 	# /usr/bin


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2013-02-18 15:57 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2013-02-18 15:57 UTC (permalink / raw
  To: gentoo-commits

commit:     55fa785f9bd0cbc6104fbd68425dc2388452c4fd
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Mon Feb 18 15:51:59 2013 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Mon Feb 18 15:57:01 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=55fa785f

Update live ebuild

Package-Manager: portage-2.1.11.52

---
 sci-mathematics/Macaulay2/ChangeLog             |    3 ++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   28 +++++++---------------
 2 files changed, 12 insertions(+), 19 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index f97fdc7..2237d2e 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  18 Feb 2013; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Update live ebuild
+
   10 Jan 2013; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   migrate to git-2 eclass, fix lapack support
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 0080340..0bc34ec 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -19,7 +19,6 @@ HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/mpfr-3.0.1.tar.gz
 		 http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz
 		 http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
 # Need normaliz for an up to date normaliz.m2
@@ -28,15 +27,10 @@ SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS=""
 
-# Macaulay2 is broken with >=mpfr-3.1, to not force a downgrade on users
-# we let it built an internal copy :(
-# This dep was removed:
-# >=dev-libs/mpfr-3.0.0
-
 DEPEND="
 	sys-libs/gdbm
-	>=dev-libs/ntl-5.5.2
-	>=sci-mathematics/pari-2.3.4[gmp]
+	dev-libs/ntl
+	sci-mathematics/pari[gmp]
 	>=sys-libs/readline-6.1
 	dev-libs/libxml2:2
 	sci-mathematics/frobby
@@ -44,7 +38,8 @@ DEPEND="
 	sci-mathematics/nauty
 	>=sci-mathematics/normaliz-2.8
 	sci-mathematics/gfan
-	>=sci-libs/mpir-2.1.1[cxx]
+	sci-libs/mpir[cxx]
+	dev-libs/mpfr
 	sci-libs/cdd+
 	sci-libs/cddlib
 	sci-libs/lrslib[gmp]
@@ -95,9 +90,6 @@ src_prepare() {
 	# /usr/bin
 	epatch "${FILESDIR}"/${PV}-paths-of-external-programs.patch
 
-	# Fixing make warnings about unavailable jobserver:
-	sed -i "s/\$(MAKE)/+ \$(MAKE)/g" "${S}"/distributions/Makefile.in
-
 	# Shortcircuit lapack tests
 	epatch "${FILESDIR}"/${PV}-lapack.patch
 
@@ -115,9 +107,6 @@ src_prepare() {
 	# same as the tested program.
 	cp "${DISTDIR}/gtest-1.6.0.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	# Temporary internal build of mpfr-3.0:
-	cp "${DISTDIR}/mpfr-3.0.1.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
 
 	eautoreconf
 }
@@ -136,16 +125,16 @@ src_configure (){
 		--disable-strip \
 		$(use_enable optimization optimize) \
 		$(use_enable debug) \
-		--enable-build-libraries="factory libfac mpfr" \
+		--enable-build-libraries="factory libfac" \
 		--with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
 		|| die "failed to configure Macaulay"
 }
 
 src_compile() {
 	# Parallel build not supported yet
-	emake -j1
+	# emake -j1
 	# For trunk builds we may wish to ignore example errors
-	# emake IgnoreExampleErrors=true -j1
+	emake IgnoreExampleErrors=true -j1
 
 	if use emacs; then
 		cd "${S}/Macaulay2/emacs"
@@ -161,7 +150,8 @@ src_test() {
 
 src_install () {
 	# Parallel install not supported yet
-	emake -j1 install
+	# NumericalAlgebraicGeometry fails (during install too?)
+	emake IgnoreExampleErrors=true -j1 install
 
 	# Remove emacs files and install them in the
 	# correct place if use emacs


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2013-02-22 10:15 Justin Lecher
  0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-02-22 10:15 UTC (permalink / raw
  To: gentoo-commits

commit:     ca78975fd7915dae4a4b66238decf1d64cf78356
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Feb 22 09:33:04 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Feb 22 09:33:04 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ca78975f

sci-mathematics/Macaulay2: Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config#

Package-Manager: portage-2.2.0_alpha163

---
 sci-mathematics/Macaulay2/ChangeLog             |    4 ++++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |   18 ++++++++++--------
 sci-mathematics/Macaulay2/metadata.xml          |   18 +++++++++---------
 3 files changed, 23 insertions(+), 17 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 3505a7e..ec1c9af 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  22 Feb 2013; Justin Lecher <jlec@gentoo.org> Macaulay2-9999.ebuild,
+  metadata.xml:
+  Use tc-getPKG_CONFIG from toolchain-funcs.eclass instead of plain pkg-config#
+
   18 Feb 2013; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Update live ebuild
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 3db0821..b182641 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=4
 
-inherit autotools elisp-common eutils flag-o-matic git-2 python
+inherit autotools elisp-common eutils flag-o-matic git-2 python toolchain-funcs
 
 IUSE="debug emacs optimization"
 
@@ -16,18 +16,20 @@ LIBFAC="libfac-3-1-4"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
-SRC_URI="ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
-		 ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
-		 http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz
-		 http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
+SRC_URI="
+	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
+	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
+	http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
+	http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz
+	http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
 # Need normaliz for an up to date normaliz.m2
 
 SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS=""
 
-DEPEND="sys-process/time
+DEPEND="
+	sys-process/time
 	virtual/pkgconfig
 	app-arch/unzip
 	app-text/dos2unix"
@@ -118,7 +120,7 @@ src_configure (){
 	fi
 
 	# configure instead of econf to enable install with --prefix
-	./configure LIBS="$(pkg-config --libs lapack)" \
+	./configure LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" \
 		--prefix="${D}/usr" \
 		--disable-encap \
 		--disable-strip \

diff --git a/sci-mathematics/Macaulay2/metadata.xml b/sci-mathematics/Macaulay2/metadata.xml
index 575e757..096a577 100644
--- a/sci-mathematics/Macaulay2/metadata.xml
+++ b/sci-mathematics/Macaulay2/metadata.xml
@@ -1,15 +1,15 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-mathematics</herd>
-<maintainer>
-  <email>tom111@gmx.de</email>
-  <name>Thomas Kahle</name>
-</maintainer>
-<use>
-  <flag name="optimization">Disable to build with -O0 for debugging.</flag>
-</use>
-<longdescription lang="en">
+  <herd>sci-mathematics</herd>
+  <maintainer>
+    <email>tom111@gmx.de</email>
+    <name>Thomas Kahle</name>
+  </maintainer>
+  <use>
+    <flag name="optimization">Disable to build with -O0 for debugging.</flag>
+  </use>
+  <longdescription lang="en">
   Macaulay2 is a research tool for algraic geometry and commutative
   algebra. 
 </longdescription>


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2013-04-18  6:56 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2013-04-18  6:56 UTC (permalink / raw
  To: gentoo-commits

commit:     61ca16b08cdb269f410a1e089cd9cf9f2ef33cd6
Author:     Thomas Kahle <tomka <AT> gentoo <DOT> org>
AuthorDate: Thu Apr 18 06:56:05 2013 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Thu Apr 18 06:56:19 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=61ca16b0

Update factory/libfac version

---
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild |    4 ++--
 1 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index b25ac45..c88ab6a 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -11,8 +11,8 @@ IUSE="debug emacs optimization"
 EGIT_REPO_URI="git://github.com/Macaulay2/M2.git"
 
 # Those packages will be built internally.
-FACTORY="factory-3-1-4-1"
-LIBFAC="libfac-3-1-4"
+FACTORY="factory-3-1-6"
+LIBFAC="libfac-3-1-6"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2013-12-04 16:22 Justin Lecher
  0 siblings, 0 replies; 28+ messages in thread
From: Justin Lecher @ 2013-12-04 16:22 UTC (permalink / raw
  To: gentoo-commits

commit:     5b51f0cbdc77f4097824d010fcb62f845d9d1560
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Wed Dec  4 16:20:42 2013 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Wed Dec  4 16:20:42 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5b51f0cb

sci-mathematics/Macaulay2: Bump EAPI to 5; Bump to python-single-r1 eclass

Package-Manager: portage-2.2.7

---
 sci-mathematics/Macaulay2/ChangeLog             |  3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 33 +++++++++++++------------
 2 files changed, 20 insertions(+), 16 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index e164ec1..b012ef2 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  04 Dec 2013; Justin Lecher <jlec@gentoo.org> Macaulay2-9999.ebuild:
+  Bump EAPI to 5; Bump to python-single-r1 eclass
+
   27 Feb 2013; Justin Lecher <jlec@gentoo.org> files/9999-lapack.patch,
   Macaulay2-9999.ebuild:
   Use PKG_CONFIG instead of generic pkg-config

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index c88ab6a..d2413c0 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -2,13 +2,11 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=4
+EAPI=5
 
-inherit autotools elisp-common eutils flag-o-matic git-2 python toolchain-funcs
+PYTHON_COMPAT=( python{2_6,2_7} )
 
-IUSE="debug emacs optimization"
-
-EGIT_REPO_URI="git://github.com/Macaulay2/M2.git"
+inherit autotools elisp-common eutils flag-o-matic git-r3 python-single-r1 toolchain-funcs
 
 # Those packages will be built internally.
 FACTORY="factory-3-1-6"
@@ -23,19 +21,23 @@ SRC_URI="
 	http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz
 	http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
 # Need normaliz for an up to date normaliz.m2
+EGIT_REPO_URI="git://github.com/Macaulay2/M2.git"
 
 SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS=""
+IUSE="debug emacs optimization"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
 
-DEPEND="
+DEPEND="${PYTHON_DEPS}
 	sys-process/time
 	virtual/pkgconfig
 	app-arch/unzip
 	app-text/dos2unix"
 # Unzip and dos2unix just for normaliz
 
-RDEPEND="
+RDEPEND="${PYTHON_DEPS}
 	sys-libs/gdbm
 	dev-libs/ntl
 	sci-mathematics/pari[gmp]
@@ -67,7 +69,7 @@ RESTRICT="mirror"
 
 src_unpack (){
 	unpack "Normaliz2.8.zip"
-	git-2_src_unpack
+	git-r3_src_unpack
 	# Undo one level of directory until git allows to checkout
 	# subdirectories
 	mv "${S}"/M2/* "${S}" || die
@@ -75,14 +77,13 @@ src_unpack (){
 }
 
 pkg_setup () {
-		tc-export CC CPP CXX
-		append-cppflags "-I/usr/include/frobby"
-		# gtest needs python:2
-		python_set_active_version 2
+	tc-export CC CPP CXX PKG_CONFIG
+	append-cppflags "-I/usr/include/frobby"
+	# gtest needs python:2
+	python-single-r1_pkg_setup
 }
 
 src_prepare() {
-	tc-export PKG_CONFIG
 	# Put updated Normaliz.m2 in place
 	cp "${WORKDIR}/Normaliz2.8/Macaulay2/Normaliz.m2" \
 		"${S}/Macaulay2/packages" || die
@@ -139,7 +140,7 @@ src_compile() {
 	emake IgnoreExampleErrors=true -j1
 
 	if use emacs; then
-		cd "${S}/Macaulay2/emacs"
+		cd "${S}/Macaulay2/emacs" || die
 		elisp-compile *.el
 	fi
 }
@@ -157,9 +158,9 @@ src_install () {
 
 	# Remove emacs files and install them in the
 	# correct place if use emacs
-	rm -rf "${D}"/usr/share/emacs/site-lisp
+	rm -rf "${ED}"/usr/share/emacs/site-lisp || die
 	if use emacs; then
-		cd "${S}/Macaulay2/emacs"
+		cd "${S}/Macaulay2/emacs" || die
 		elisp-install ${PN} *.elc *.el
 		elisp-site-file-install "${FILESDIR}/${SITEFILE}"
 	fi


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2014-04-29  6:17 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2014-04-29  6:17 UTC (permalink / raw
  To: gentoo-commits

commit:     ccd96d132a618c8d16664d39ead557a3ec3365db
Author:     Thomas Kahle <thomas.kahle <AT> ovgu <DOT> de>
AuthorDate: Tue Apr 29 06:17:06 2014 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Tue Apr 29 06:17:06 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ccd96d13

Fix live ebuild

Package-Manager: portage-2.2.8-r1

---
 sci-mathematics/Macaulay2/ChangeLog             |  5 ++++-
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 23 ++++++++++++-----------
 2 files changed, 16 insertions(+), 12 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index b012ef2..59afbfd 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -1,7 +1,10 @@
 # ChangeLog for sci-mathematics/Macaulay2
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  29 Apr 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Fix live ebuild
+
   04 Dec 2013; Justin Lecher <jlec@gentoo.org> Macaulay2-9999.ebuild:
   Bump EAPI to 5; Bump to python-single-r1 eclass
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 7c39878..b3a6e7f 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -17,16 +17,16 @@ HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_URI="
 	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
-	http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/${FACTORY}.tar.gz
-	http://www.math.uiuc.edu/Macaulay2/Extra/gtest-1.6.0.tar.gz
-	http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
+	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${FACTORY}.tar.gz
+	http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/gtest-1.7.0.tar.gz"
+#	http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
 # Need normaliz for an up to date normaliz.m2
 EGIT_REPO_URI="git://github.com/Macaulay2/M2.git"
 
 SLOT="0"
 LICENSE="GPL-2"
 KEYWORDS=""
-IUSE="debug emacs optimization"
+IUSE="debug emacs +optimization"
 
 REQUIRED_USE="${PYTHON_REQUIRED_USE}"
 
@@ -68,12 +68,13 @@ S="${WORKDIR}/${PN}-${PV}/"
 RESTRICT="mirror"
 
 src_unpack (){
-	unpack "Normaliz2.8.zip"
+	# unpack "Normaliz2.8.zip"
 	git-r3_src_unpack
 	# Undo one level of directory until git allows to checkout
 	# subdirectories
 	mv "${S}"/M2/* "${S}" || die
-	rmdir "${S}"/M2 || die
+	# Need to get rid of this now because install wants this location later
+	rm -r "${S}/M2" || die
 }
 
 pkg_setup () {
@@ -85,9 +86,9 @@ pkg_setup () {
 
 src_prepare() {
 	# Put updated Normaliz.m2 in place
-	cp "${WORKDIR}/Normaliz2.8/Macaulay2/Normaliz.m2" \
-		"${S}/Macaulay2/packages" || die
-	dos2unix "${S}/Macaulay2/packages/Normaliz.m2" || die
+	# cp "${WORKDIR}/Normaliz2.8/Macaulay2/Normaliz.m2" \
+	# 	"${S}/Macaulay2/packages" || die
+	# dos2unix "${S}/Macaulay2/packages/Normaliz.m2" || die
 
 	# Patching .m2 files to look for external programs in
 	# /usr/bin
@@ -98,7 +99,6 @@ src_prepare() {
 
 	# Factory, and libfac are statically linked libraries which (in this flavor) are not used by any
 	# other program. We build them internally and don't install them
-	mkdir "${S}/BUILD/tarfiles" || die "Creation of directory failed"
 	cp "${DISTDIR}/${FACTORY}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	cp "${DISTDIR}/factory-gftables.tar.gz" "${S}/BUILD/tarfiles/" \
@@ -108,7 +108,7 @@ src_prepare() {
 	# Macaulay2 developers want that gtest is built internally because
 	# the documentation says it may fail if build with options not the
 	# same as the tested program.
-	cp "${DISTDIR}/gtest-1.6.0.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/gtest-1.7.0.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 
 	eautoreconf
@@ -126,6 +126,7 @@ src_configure (){
 		--prefix="${D}/usr" \
 		--disable-encap \
 		--disable-strip \
+		--with-issue=Gentoo \
 		$(use_enable optimization optimize) \
 		$(use_enable debug) \
 		--enable-build-libraries="factory libfac" \


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2014-06-10 21:04 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2014-06-10 21:04 UTC (permalink / raw
  To: gentoo-commits

commit:     97d1c35866e2ca2fbb2d54b32d268bb833914544
Author:     Thomas Kahle <thomas.kahle <AT> ovgu <DOT> de>
AuthorDate: Tue Jun 10 21:04:26 2014 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Tue Jun 10 21:04:35 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=97d1c358

update live ebuild

Package-Manager: portage-2.2.8-r1

---
 sci-mathematics/Macaulay2/ChangeLog             |  3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 12 ++++--------
 2 files changed, 7 insertions(+), 8 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 59afbfd..d28de71 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jun 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  update live ebuild
+
   29 Apr 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Fix live ebuild
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index b3a6e7f..888dc99 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -9,13 +9,11 @@ PYTHON_COMPAT=( python{2_6,2_7} )
 inherit autotools elisp-common eutils flag-o-matic git-r3 python-single-r1 toolchain-funcs
 
 # Those packages will be built internally.
-FACTORY="factory-3-1-6"
-LIBFAC="libfac-3-1-6"
+FACTORY="factory-4.0.0"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_URI="
-	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${FACTORY}.tar.gz
 	http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/gtest-1.7.0.tar.gz"
@@ -97,14 +95,12 @@ src_prepare() {
 	# Shortcircuit lapack tests
 	epatch "${FILESDIR}"/${PV}-lapack.patch
 
-	# Factory, and libfac are statically linked libraries which (in this flavor) are not used by any
-	# other program. We build them internally and don't install them
+	# Factory is a statically linked library which (in this flavor) are not used by any
+	# other program. We build it internally and don't install it.
 	cp "${DISTDIR}/${FACTORY}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	cp "${DISTDIR}/factory-gftables.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	cp "${DISTDIR}/${LIBFAC}.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
 	# Macaulay2 developers want that gtest is built internally because
 	# the documentation says it may fail if build with options not the
 	# same as the tested program.
@@ -129,7 +125,7 @@ src_configure (){
 		--with-issue=Gentoo \
 		$(use_enable optimization optimize) \
 		$(use_enable debug) \
-		--enable-build-libraries="factory libfac" \
+		--enable-build-libraries="factory" \
 		--with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
 		|| die "failed to configure Macaulay"
 }


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2014-06-10 21:08 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2014-06-10 21:08 UTC (permalink / raw
  To: gentoo-commits

commit:     3f3ecfb0ad1c57a20c18a3ad53ba7dee86577ddc
Author:     Thomas Kahle <thomas.kahle <AT> ovgu <DOT> de>
AuthorDate: Tue Jun 10 21:04:26 2014 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Tue Jun 10 21:07:36 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3f3ecfb0

update live ebuild

Package-Manager: portage-2.2.8-r1

---
 sci-mathematics/Macaulay2/ChangeLog             |  3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 12 ++++--------
 2 files changed, 7 insertions(+), 8 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 59afbfd..d28de71 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jun 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  update live ebuild
+
   29 Apr 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Fix live ebuild
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index b3a6e7f..888dc99 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -9,13 +9,11 @@ PYTHON_COMPAT=( python{2_6,2_7} )
 inherit autotools elisp-common eutils flag-o-matic git-r3 python-single-r1 toolchain-funcs
 
 # Those packages will be built internally.
-FACTORY="factory-3-1-6"
-LIBFAC="libfac-3-1-6"
+FACTORY="factory-4.0.0"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
 SRC_URI="
-	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/${LIBFAC}.tar.gz
 	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
 	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${FACTORY}.tar.gz
 	http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/gtest-1.7.0.tar.gz"
@@ -97,14 +95,12 @@ src_prepare() {
 	# Shortcircuit lapack tests
 	epatch "${FILESDIR}"/${PV}-lapack.patch
 
-	# Factory, and libfac are statically linked libraries which (in this flavor) are not used by any
-	# other program. We build them internally and don't install them
+	# Factory is a statically linked library which (in this flavor) are not used by any
+	# other program. We build it internally and don't install it.
 	cp "${DISTDIR}/${FACTORY}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	cp "${DISTDIR}/factory-gftables.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	cp "${DISTDIR}/${LIBFAC}.tar.gz" "${S}/BUILD/tarfiles/" \
-		|| die "copy failed"
 	# Macaulay2 developers want that gtest is built internally because
 	# the documentation says it may fail if build with options not the
 	# same as the tested program.
@@ -129,7 +125,7 @@ src_configure (){
 		--with-issue=Gentoo \
 		$(use_enable optimization optimize) \
 		$(use_enable debug) \
-		--enable-build-libraries="factory libfac" \
+		--enable-build-libraries="factory" \
 		--with-unbuilt-programs="4ti2 gfan normaliz nauty cddplus lrslib" \
 		|| die "failed to configure Macaulay"
 }


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2014-06-11 13:18 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2014-06-11 13:18 UTC (permalink / raw
  To: gentoo-commits

commit:     baf35ab2771c331b2b5dcd25323edfb7d735fdb1
Author:     Thomas Kahle <thomas.kahle <AT> ovgu <DOT> de>
AuthorDate: Wed Jun 11 13:18:08 2014 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Wed Jun 11 13:18:08 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=baf35ab2

Update live ebuild

Package-Manager: portage-2.2.8-r1

---
 sci-mathematics/Macaulay2/ChangeLog             |  3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 15 +++++++--------
 2 files changed, 10 insertions(+), 8 deletions(-)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index d28de71..b54b9b7 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  11 Jun 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  Update live ebuild
+
   10 Jun 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   update live ebuild
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 888dc99..40b96f5 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -8,17 +8,16 @@ PYTHON_COMPAT=( python{2_6,2_7} )
 
 inherit autotools elisp-common eutils flag-o-matic git-r3 python-single-r1 toolchain-funcs
 
-# Those packages will be built internally.
-FACTORY="factory-4.0.0"
+FACTORY="factory-4.0.0+m4"
+FACTORY_GFTABLES="factory.4.0.1-gftables"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
 HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
+BASE_URI="http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk"
 SRC_URI="
-	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-gftables.tar.gz
-	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/${FACTORY}.tar.gz
-	http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/gtest-1.7.0.tar.gz"
-#	http://www.mathematik.uni-osnabrueck.de/normaliz/Normaliz2.8/Normaliz2.8.zip"
-# Need normaliz for an up to date normaliz.m2
+	${BASE_URI}/${FACTORY}.tar.gz
+	${BASE_URI}/${FACTORY_GFTABLES}.tar.gz
+	${BASE_URI}/gtest-1.7.0.tar.gz"
 EGIT_REPO_URI="git://github.com/Macaulay2/M2.git"
 
 SLOT="0"
@@ -99,7 +98,7 @@ src_prepare() {
 	# other program. We build it internally and don't install it.
 	cp "${DISTDIR}/${FACTORY}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
-	cp "${DISTDIR}/factory-gftables.tar.gz" "${S}/BUILD/tarfiles/" \
+	cp "${DISTDIR}/${FACTORY_GFTABLES}.tar.gz" "${S}/BUILD/tarfiles/" \
 		|| die "copy failed"
 	# Macaulay2 developers want that gtest is built internally because
 	# the documentation says it may fail if build with options not the


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2014-06-26 11:36 Thomas Kahle
  0 siblings, 0 replies; 28+ messages in thread
From: Thomas Kahle @ 2014-06-26 11:36 UTC (permalink / raw
  To: gentoo-commits

commit:     7e4850938063a368c596559535ea466c26bc407c
Author:     Thomas Kahle <thomas.kahle <AT> ovgu <DOT> de>
AuthorDate: Thu Jun 26 11:37:06 2014 +0000
Commit:     Thomas Kahle <tom111 <AT> gmx <DOT> de>
CommitDate: Thu Jun 26 11:37:14 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7e485093

add flint dependency

Package-Manager: portage-2.2.8-r1

---
 sci-mathematics/Macaulay2/ChangeLog             | 3 +++
 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 1 +
 2 files changed, 4 insertions(+)

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index b54b9b7..e9dbb4e 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  26 Jun 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
+  add flint dependency
+
   11 Jun 2014; Thomas Kahle <tomka@gentoo.org> Macaulay2-9999.ebuild:
   Update live ebuild
 

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 40b96f5..0a51719 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -40,6 +40,7 @@ RDEPEND="${PYTHON_DEPS}
 	sci-mathematics/pari[gmp]
 	>=sys-libs/readline-6.1
 	dev-libs/libxml2:2
+	sci-mathematics/flint[gc]
 	sci-mathematics/frobby
 	sci-mathematics/4ti2
 	sci-mathematics/nauty


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2021-01-16 21:29 Andrew Ammerlaan
  0 siblings, 0 replies; 28+ messages in thread
From: Andrew Ammerlaan @ 2021-01-16 21:29 UTC (permalink / raw
  To: gentoo-commits

commit:     ec744b8b8ff2871b0cdc5da919951cf0166b21ba
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Jan 16 21:29:09 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Jan 16 21:29:09 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ec744b8b

sci-mathematics/Macaulay2: fix fetch, fix homepage

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 46e370ce0..529be005b 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -1,18 +1,18 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 PYTHON_COMPAT=( python2_7 )
 
-inherit autotools elisp-common eutils flag-o-matic git-r3 python-single-r1 toolchain-funcs
+inherit autotools elisp-common flag-o-matic git-r3 python-single-r1 toolchain-funcs
 
 FACTORY="factory-4.0.0+m4"
 FACTORY_GFTABLES="factory.4.0.1-gftables"
 
 DESCRIPTION="Research tool for commutative algebra and algebraic geometry"
-HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
-BASE_URI="http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk"
+HOMEPAGE="https://faculty.math.illinois.edu/Macaulay2"
+BASE_URI="https://faculty.math.illinois.edu/Macaulay2/Downloads/OtherSourceCode/"
 SRC_URI="
 	${BASE_URI}/${FACTORY}.tar.gz
 	${BASE_URI}/${FACTORY_GFTABLES}.tar.gz
@@ -56,7 +56,7 @@ RDEPEND="${PYTHON_DEPS}
 	sys-libs/ncurses
 	>=dev-libs/boehm-gc-7.2_alpha6[threads]
 	dev-libs/libatomic_ops
-	emacs? ( virtual/emacs )"
+	emacs? ( app-editors/emacs )"
 
 SITEFILE=70Macaulay2-gentoo.el
 
@@ -89,10 +89,12 @@ src_prepare() {
 
 	# Patching .m2 files to look for external programs in
 	# /usr/bin
-	epatch "${FILESDIR}"/${PV}-paths-of-external-programs.patch
+	eapply "${FILESDIR}"/${PV}-paths-of-external-programs.patch
 
 	# Shortcircuit lapack tests
-	epatch "${FILESDIR}"/${PV}-lapack.patch
+	eapply "${FILESDIR}"/${PV}-lapack.patch
+
+	eapply_user
 
 	# Factory is a statically linked library which (in this flavor) are not used by any
 	# other program. We build it internally and don't install it.


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2021-01-19 16:56 Andrew Ammerlaan
  0 siblings, 0 replies; 28+ messages in thread
From: Andrew Ammerlaan @ 2021-01-19 16:56 UTC (permalink / raw
  To: gentoo-commits

commit:     b5fb630fbc5bfeadf108e0e58c7be13a60a8a81a
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:52:36 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:52:36 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=b5fb630f

sci-mathematics/Macaulay2: add default for gc flag

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-mathematics/Macaulay2/Macaulay2-9999.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
index 529be005b..5b4e608c7 100644
--- a/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
+++ b/sci-mathematics/Macaulay2/Macaulay2-9999.ebuild
@@ -39,7 +39,7 @@ RDEPEND="${PYTHON_DEPS}
 	sci-mathematics/pari[gmp]
 	>=sys-libs/readline-6.1
 	dev-libs/libxml2:2
-	sci-mathematics/flint[gc]
+	sci-mathematics/flint[gc(-)]
 	sci-mathematics/frobby
 	sci-mathematics/4ti2
 	sci-mathematics/nauty


^ permalink raw reply related	[flat|nested] 28+ messages in thread
* [gentoo-commits] proj/sci:master commit in: sci-mathematics/Macaulay2/
@ 2021-01-30 15:22 Andrew Ammerlaan
  0 siblings, 0 replies; 28+ messages in thread
From: Andrew Ammerlaan @ 2021-01-30 15:22 UTC (permalink / raw
  To: gentoo-commits

commit:     d15b3ea9dba7b0b66db33169f20dbe979313f836
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Sat Jan 30 15:21:35 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Sat Jan 30 15:21:35 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d15b3ea9

sci-mathematics/Macaulay2: remove redundant long description

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-mathematics/Macaulay2/metadata.xml | 4 ----
 1 file changed, 4 deletions(-)

diff --git a/sci-mathematics/Macaulay2/metadata.xml b/sci-mathematics/Macaulay2/metadata.xml
index 05e3f791a..703c18dee 100644
--- a/sci-mathematics/Macaulay2/metadata.xml
+++ b/sci-mathematics/Macaulay2/metadata.xml
@@ -12,8 +12,4 @@
 	<use>
 		<flag name="optimization">Disable to build with -O0 for debugging.</flag>
 	</use>
-	<longdescription lang="en">
-Macaulay2 is a research tool for algraic geometry and commutative
-algebra. 
-</longdescription>
 </pkgmetadata>


^ permalink raw reply related	[flat|nested] 28+ messages in thread
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2011-03-07 12:01 Justin Lecher
2011-08-09 11:46 Thomas Kahle
2011-09-25  7:27 Thomas Kahle
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2012-07-30 12:39 Thomas Kahle
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2012-10-12 21:36 Thomas Kahle
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2012-10-24 19:23 Thomas Kahle
2012-11-13  2:24 Thomas Kahle
2013-01-10  9:18 Thomas Kahle
2013-02-18 15:57 Thomas Kahle
2013-02-18 15:57 Thomas Kahle
2013-02-22 10:15 Justin Lecher
2013-04-18  6:56 Thomas Kahle
2013-12-04 16:22 Justin Lecher
2014-04-29  6:17 Thomas Kahle
2014-06-10 21:04 Thomas Kahle
2014-06-10 21:08 Thomas Kahle
2014-06-11 13:18 Thomas Kahle
2014-06-26 11:36 Thomas Kahle
2021-01-16 21:29 Andrew Ammerlaan
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