[gentoo-commits] proj/sci:master commit in: sci-biology/artemis-bin/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     f08d29fa794de7b2c607e92d197a7d5b3605a5bc
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Jan  8 15:51:07 2012 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Jan  8 15:51:07 2012 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f08d29fa

sci-biology/artemis-bin: DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool

---
 sci-biology/artemis-bin/ChangeLog                  |   10 +++++++++
 sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild |   22 ++++++++++++++++++++
 sci-biology/artemis-bin/metadata.xml               |    9 ++++++++
 3 files changed, 41 insertions(+), 0 deletions(-)

diff --git a/sci-biology/artemis-bin/ChangeLog b/sci-biology/artemis-bin/ChangeLog
new file mode 100644
index 0000000..9659b90
--- /dev/null
+++ b/sci-biology/artemis-bin/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/artemis-bin
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*artemis-bin-13.2.12 (08 Jan 2012)
+
+  08 Jan 2012; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
+  +artemis-bin-13.2.12.ebuild, +metadata.xml:
+  initial, not yet working ebuild
+

diff --git a/sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild b/sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild
new file mode 100644
index 0000000..a62f700
--- /dev/null
+++ b/sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild
@@ -0,0 +1,22 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit java-pkg-2
+
+DESCRIPTION="DNA sequence viewer, annotation (Artemis) and comparison (ACT) tool"
+HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/artemis/v13/v"${PV}"/artemis_compiled_v"${PV}".tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS=""
+IUSE=""
+
+DEPEND="sci-biology/samtools
+		sci-biology/bamview"
+RDEPEND="${DEPEND}
+		>=virtual/jre-1.5"
+

diff --git a/sci-biology/artemis-bin/metadata.xml b/sci-biology/artemis-bin/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/artemis-bin/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>