From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1RZ3WG-00064W-Vj for garchives@archives.gentoo.org; Fri, 09 Dec 2011 16:41:57 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 2F2B221C137; Fri, 9 Dec 2011 16:41:49 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id DA01021C137 for ; Fri, 9 Dec 2011 16:41:48 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id E57F21B4011 for ; Fri, 9 Dec 2011 16:41:47 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 69C4480042 for ; Fri, 9 Dec 2011 16:41:47 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/tablet-bin/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/tablet-bin/ChangeLog sci-biology/tablet-bin/tablet-bin-1.11.05.03.ebuild sci-biology/tablet-bin/tablet-bin-1.11.11.01.ebuild X-VCS-Directories: sci-biology/tablet-bin/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: bd1e14187a928b3e425778bed63f44b2f5d721c8 Date: Fri, 9 Dec 2011 16:41:47 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: 131e911c-7c3d-447a-8d66-5dc78f1c7e9b X-Archives-Hash: 81253d0a9c43badb120be65b376133c8 commit: bd1e14187a928b3e425778bed63f44b2f5d721c8 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Fri Dec 9 16:41:05 2011 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Fri Dec 9 16:41:05 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3Dbd1e1418 sci-biology/tablet-bin: ebuild cleanup, version bump (Portage version: 2.1.10.38/git/Linux i686, unsigned Manifest commit) --- sci-biology/tablet-bin/ChangeLog | 10 +++++++ .../tablet-bin/tablet-bin-1.11.05.03.ebuild | 27 +++++++++++---= ------ ...1.05.03.ebuild =3D> tablet-bin-1.11.11.01.ebuild} | 27 +++++++++++-= -------- 3 files changed, 40 insertions(+), 24 deletions(-) diff --git a/sci-biology/tablet-bin/ChangeLog b/sci-biology/tablet-bin/Ch= angeLog new file mode 100644 index 0000000..92c48b6 --- /dev/null +++ b/sci-biology/tablet-bin/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/tablet-bin +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*tablet-bin-1.11.11.01 (09 Dec 2011) + + 09 Dec 2011; Martin Mokrejs + tablet-bin-1.11.05.03.ebuild, +tablet-bin-1.11.11.01.ebuild: + ebuild cleanup, version bump + diff --git a/sci-biology/tablet-bin/tablet-bin-1.11.05.03.ebuild b/sci-bi= ology/tablet-bin/tablet-bin-1.11.05.03.ebuild index 49983e3..32cc463e 100644 --- a/sci-biology/tablet-bin/tablet-bin-1.11.05.03.ebuild +++ b/sci-biology/tablet-bin/tablet-bin-1.11.05.03.ebuild @@ -6,19 +6,22 @@ EAPI=3D3 =20 inherit java-pkg-2 python =20 -DESCRIPTION=3D"Graphical viewer for next generation sequence assemblies = and alignments." +DESCRIPTION=3D"Viewer of next generation sequence assemblies and alignme= nts." HOMEPAGE=3D"http://bioinf.scri.ac.uk/tablet/" SRC_URI=3D"http://bioinf.scri.ac.uk/tablet/installers/tablet_linux_x86_1= _11_05_03.sh http://bioinf.scri.ac.uk/tablet/additional/coveragestats.py" =20 -# Tablet uses a modified version of the BSD License which has been edite= d to remove -# references to distribution and use in source forms. This means that we= are happy -# for you to distribute and use Tablet however you please, but we do not= (yet) want -# to make the source code publicly available. +# Upstream says regarding source code unavailability: +# Tablet uses a modified version of the BSD License which has been edite= d to +# remove references to distribution and use in source forms. This means = that +# we are happy for you to distribute and use Tablet however you please, = but we +# do not (yet) want to make the source code publicly available. =20 -# It's in the installer, and ends up on disk after installation at /opt/= Tablet/docs/tablet.html -# The original BSD licence was modified to remove references to distribu= tion and use in -# source forms, because we cannot make the source code available for Tab= let. +# The licence file itself is in the installer, and ends up on disk after +# installation at /opt/Tablet/docs/tablet.html +# The original BSD licence was modified to remove references to distribu= tion +# and use in source forms, because we cannot make the source code availa= ble +# for Tablet. =20 LICENSE=3D"Tablet" SLOT=3D"0" @@ -31,13 +34,13 @@ RDEPEND=3D"${DEPEND} dev-lang/python" =20 src_install() { - # In theory it seems this binary package could be installed through ant= instead - # of the install4j package which is not easy to be forced non-interacti= ve. - # The below approach is not ideal. + # In theory it seems this binary package could be installed through ant + # instead of the install4j package which is not easy to be forced + # non-interactive. The below approach via install4j is not ideal but wo= rks. sed "s#\"\${D}\"#"${D}"#g" "${FILESDIR}"/response.varfile > "${DISTDIR}= "/response.varfile || die "sed failed" =20 # the intallation script somehow does not pickup - # -varfile=3D"${DISTDIR}"/response.varfile from the commandline and teh= refore + # -varfile=3D"${DISTDIR}"/response.varfile from the commandline and the= refore # we place the file rather directly into the place where it should resi= de. # In the file you can read details how the variables were mangled. For # example, the trick with sys.symlinkDir in the response.varfile is to diff --git a/sci-biology/tablet-bin/tablet-bin-1.11.05.03.ebuild b/sci-bi= ology/tablet-bin/tablet-bin-1.11.11.01.ebuild similarity index 76% copy from sci-biology/tablet-bin/tablet-bin-1.11.05.03.ebuild copy to sci-biology/tablet-bin/tablet-bin-1.11.11.01.ebuild index 49983e3..32cc463e 100644 --- a/sci-biology/tablet-bin/tablet-bin-1.11.05.03.ebuild +++ b/sci-biology/tablet-bin/tablet-bin-1.11.11.01.ebuild @@ -6,19 +6,22 @@ EAPI=3D3 =20 inherit java-pkg-2 python =20 -DESCRIPTION=3D"Graphical viewer for next generation sequence assemblies = and alignments." +DESCRIPTION=3D"Viewer of next generation sequence assemblies and alignme= nts." HOMEPAGE=3D"http://bioinf.scri.ac.uk/tablet/" SRC_URI=3D"http://bioinf.scri.ac.uk/tablet/installers/tablet_linux_x86_1= _11_05_03.sh http://bioinf.scri.ac.uk/tablet/additional/coveragestats.py" =20 -# Tablet uses a modified version of the BSD License which has been edite= d to remove -# references to distribution and use in source forms. This means that we= are happy -# for you to distribute and use Tablet however you please, but we do not= (yet) want -# to make the source code publicly available. +# Upstream says regarding source code unavailability: +# Tablet uses a modified version of the BSD License which has been edite= d to +# remove references to distribution and use in source forms. This means = that +# we are happy for you to distribute and use Tablet however you please, = but we +# do not (yet) want to make the source code publicly available. =20 -# It's in the installer, and ends up on disk after installation at /opt/= Tablet/docs/tablet.html -# The original BSD licence was modified to remove references to distribu= tion and use in -# source forms, because we cannot make the source code available for Tab= let. +# The licence file itself is in the installer, and ends up on disk after +# installation at /opt/Tablet/docs/tablet.html +# The original BSD licence was modified to remove references to distribu= tion +# and use in source forms, because we cannot make the source code availa= ble +# for Tablet. =20 LICENSE=3D"Tablet" SLOT=3D"0" @@ -31,13 +34,13 @@ RDEPEND=3D"${DEPEND} dev-lang/python" =20 src_install() { - # In theory it seems this binary package could be installed through ant= instead - # of the install4j package which is not easy to be forced non-interacti= ve. - # The below approach is not ideal. + # In theory it seems this binary package could be installed through ant + # instead of the install4j package which is not easy to be forced + # non-interactive. The below approach via install4j is not ideal but wo= rks. sed "s#\"\${D}\"#"${D}"#g" "${FILESDIR}"/response.varfile > "${DISTDIR}= "/response.varfile || die "sed failed" =20 # the intallation script somehow does not pickup - # -varfile=3D"${DISTDIR}"/response.varfile from the commandline and teh= refore + # -varfile=3D"${DISTDIR}"/response.varfile from the commandline and the= refore # we place the file rather directly into the place where it should resi= de. # In the file you can read details how the variables were mangled. For # example, the trick with sys.symlinkDir in the response.varfile is to