From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1QaWda-00031i-2p for garchives@archives.gentoo.org; Sat, 25 Jun 2011 17:27:18 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id 03E991C157; Sat, 25 Jun 2011 17:21:58 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id B258F1C157 for ; Sat, 25 Jun 2011 17:21:58 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 4D6422AC067 for ; Sat, 25 Jun 2011 17:21:58 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id AEC768001E for ; Sat, 25 Jun 2011 17:21:57 +0000 (UTC) From: "Justin Lecher" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Justin Lecher" Message-ID: Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ssaha2-bin/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ssaha2-bin/ChangeLog sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild X-VCS-Directories: sci-biology/ssaha2-bin/ X-VCS-Committer: jlec X-VCS-Committer-Name: Justin Lecher X-VCS-Revision: b6d26e31654a901b96d326eaef0e3c991fd9aad8 Date: Sat, 25 Jun 2011 17:21:57 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: 683402231526f40ec181a221706afaf9 commit: b6d26e31654a901b96d326eaef0e3c991fd9aad8 Author: Justin Lecher gentoo org> AuthorDate: Sat Jun 25 13:03:01 2011 +0000 Commit: Justin Lecher gentoo org> CommitDate: Sat Jun 25 13:03:01 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3Db6d26e31 Cleaned ebuild and fixed LICENSE (Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit = with key 70EB7916) --- sci-biology/ssaha2-bin/ChangeLog | 7 ++++ sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild | 41 +++++++++---------= ----- 2 files changed, 23 insertions(+), 25 deletions(-) diff --git a/sci-biology/ssaha2-bin/ChangeLog b/sci-biology/ssaha2-bin/Ch= angeLog new file mode 100644 index 0000000..914725e --- /dev/null +++ b/sci-biology/ssaha2-bin/ChangeLog @@ -0,0 +1,7 @@ +# ChangeLog for sci-biology/ssaha2-bin +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + + 25 Jun 2011; Justin Lecher ssaha2-bin-2.5.3.ebuild: + Cleaned ebuild and fixed LICENSE + diff --git a/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild b/sci-biology= /ssaha2-bin/ssaha2-bin-2.5.3.ebuild index eaf02be..34b63dd 100644 --- a/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild +++ b/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild @@ -1,43 +1,34 @@ -# Copyright 1999-2010 Gentoo Foundation +# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ =20 -EAPI=3D3 +EAPI=3D4 =20 inherit toolchain-funcs =20 DESCRIPTION=3D"SSAHA2: Sequence Search and Alignment by Hashing Algorith= m" HOMEPAGE=3D"http://www.sanger.ac.uk/resources/software/ssaha2" -SRC_URI=3D"x86? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/= ssaha2_i686.tgz ) - amd64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_= x86_64.tgz ) - ia64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_i= a64.tgz ) - ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/samflag.c - ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2-manual.pd= f" - -LICENSE=3D"GRL" +SRC_URI=3D" + x86? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_i68= 6.tgz ) + amd64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_x= 86_64.tgz ) + ia64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_ia= 64.tgz ) + ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/samflag.c + ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2-manual.pdf= " + +LICENSE=3D"as-is" SLOT=3D"0" KEYWORDS=3D"~amd64 ~x86" IUSE=3D"" =20 -DEPEND=3D"" -RDEPEND=3D"${DEPEND}" - -if use x86; then - S=3D"${WORKDIR}"/ssaha2_v"${PV}"_i686 -fi -if use amd64; then - S=3D"${WORKDIR}"/ssaha2_v"${PV}"_x86_64 -fi -if use ia64; then - S=3D"${WORKDIR}"/ssaha2_v"${PV}"_ia64 -fi +use x86 && S=3D"${WORKDIR}"/ssaha2_v"${PV}"_i686 +use amd64 && S=3D"${WORKDIR}"/ssaha2_v"${PV}"_x86_64 +use ia64 && S=3D"${WORKDIR}"/ssaha2_v"${PV}"_ia64 =20 src_compile() { - $(tc-getCC) ${CFLAGS} -o samflag "${DISTDIR}"/samflag.c || die "Failed = to compile samflags" + $(tc-getCC) ${CFLAGS} ${LDFLAGS} -o samflag "${DISTDIR}"/samflag.c || d= ie "Failed to compile samflags" } =20 src_install() { - dobin samflag ssaha2 ssaha2Build ssahaSNP || die "dobin failed" - dodoc README || die "dodoc failed" - dodoc "${DISTDIR}"/ssaha2-manual.pdf || die "Failed to install ssaha2-m= anual.pdf" + dobin samflag ssaha2 ssaha2Build ssahaSNP + dodoc README "${DISTDIR}"/ssaha2-manual.pdf }