From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1Pux2O-0000Od-Br for garchives@archives.gentoo.org; Thu, 03 Mar 2011 01:09:04 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id AAA601C010; Thu, 3 Mar 2011 01:08:57 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id 6BE051C010 for ; Thu, 3 Mar 2011 01:08:56 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-CAMELLIA256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 976161B405F for ; Thu, 3 Mar 2011 01:08:56 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 017268006A for ; Thu, 3 Mar 2011 01:08:56 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/ssaha2-bin/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/ssaha2-bin/metadata.xml sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild X-VCS-Directories: sci-biology/ssaha2-bin/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: b6341cabb0f9199c7207ad6aead498d64d357f95 Date: Thu, 3 Mar 2011 01:08:56 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: 1530c1a89ccaddf953842518bb082db6 commit: b6341cabb0f9199c7207ad6aead498d64d357f95 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Thu Mar 3 01:01:56 2011 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Mar 3 01:01:56 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3Db6341cab sci-biology/ssaha2: new package, the GRL license text extracted from the = saha2-manual.pdf seems kind of ... not like a real License text (Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit) --- sci-biology/ssaha2-bin/metadata.xml | 9 +++++ sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild | 44 ++++++++++++++++++= ++++++ 2 files changed, 53 insertions(+), 0 deletions(-) diff --git a/sci-biology/ssaha2-bin/metadata.xml b/sci-biology/ssaha2-bin= /metadata.xml new file mode 100644 index 0000000..07b5255 --- /dev/null +++ b/sci-biology/ssaha2-bin/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + diff --git a/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild b/sci-biology= /ssaha2-bin/ssaha2-bin-2.5.3.ebuild new file mode 100644 index 0000000..4c55b8f --- /dev/null +++ b/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3D3 + +inherit toolchain-funcs + +DESCRIPTION=3D"SSAHA2: Sequence Search and Alignment by Hashing Algorith= m" +HOMEPAGE=3D"http://www.sanger.ac.uk/resources/software/ssaha2" +SRC_URI=3D"x86? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/= ssaha2_i686.tgz ) + amd64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_= x86_64.tgz ) + ia64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_i= a64.tgz ) + ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/samflag.c + ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2-manual.pd= f" + +LICENSE=3D"GRL" +SLOT=3D"0" +KEYWORDS=3D"~amd64 ~x86" +IUSE=3D"" + +DEPEND=3D"" +RDEPEND=3D"${DEPEND}" + +if use x86; then + S=3D"${WORKDIR}"/ssaha2_v"${PV}"_i686 +fi +if use amd64; then + S=3D"${WORKDIR}"/ssaha2_v"${PV}"_x86_64 +fi +if use ia64; then + S=3D"${WORKDIR}"/ssaha2_v"${PV}"_ia64 +fi + +src_compile() { + $(tc-getCC) ${CFLAGS} -o samflag "${DISTDIR}"/samflag.c || die "Failed = to compile samflags" +} + +src_install() { + dobin samflag ssaha2 ssaha2Build ssahaSNP || die "dobin failed" + dodoc README || die "dodoc failed" + dodoc "${DISTDIR}"/ssaha2-manual.pdf || die "Failed to install ssaha2-m= anual.pdf" +} +