[gentoo-commits] proj/sci:master commit in: sci-biology/ssaha2-bin/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     b6341cabb0f9199c7207ad6aead498d64d357f95
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar  3 01:01:56 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar  3 01:01:56 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b6341cab

sci-biology/ssaha2: new package, the GRL license text extracted from the saha2-manual.pdf seems kind of ... not like a real License text

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/ssaha2-bin/metadata.xml            |    9 +++++
 sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild |   44 ++++++++++++++++++++++++
 2 files changed, 53 insertions(+), 0 deletions(-)

diff --git a/sci-biology/ssaha2-bin/metadata.xml b/sci-biology/ssaha2-bin/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/ssaha2-bin/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>

diff --git a/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild b/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild
new file mode 100644
index 0000000..4c55b8f
--- /dev/null
+++ b/sci-biology/ssaha2-bin/ssaha2-bin-2.5.3.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+inherit toolchain-funcs
+
+DESCRIPTION="SSAHA2: Sequence Search and Alignment by Hashing Algorithm"
+HOMEPAGE="http://www.sanger.ac.uk/resources/software/ssaha2"
+SRC_URI="x86? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_i686.tgz )
+		amd64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_x86_64.tgz )
+		ia64? ( ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2_ia64.tgz )
+		ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/samflag.c
+		ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha2/ssaha2-manual.pdf"
+
+LICENSE="GRL"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+if use x86; then
+	S="${WORKDIR}"/ssaha2_v"${PV}"_i686
+fi
+if use amd64; then
+	S="${WORKDIR}"/ssaha2_v"${PV}"_x86_64
+fi
+if use ia64; then
+	S="${WORKDIR}"/ssaha2_v"${PV}"_ia64
+fi
+
+src_compile() {
+	$(tc-getCC) ${CFLAGS} -o samflag "${DISTDIR}"/samflag.c || die "Failed to compile samflags"
+}
+
+src_install() {
+	dobin samflag ssaha2 ssaha2Build ssahaSNP || die "dobin failed"
+	dodoc README || die "dodoc failed"
+	dodoc "${DISTDIR}"/ssaha2-manual.pdf || die "Failed to install ssaha2-manual.pdf"
+}
+