[gentoo-commits] proj/sci:master commit in: sci-biology/autoeditor/

[gentoo-commits] proj/sci:master commit in: sci-biology/autoeditor/

[Justin Lecher]

commit:     b3fa094aabbbe78bf1e2d152f10399ad885e5df8
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Fri Jun 24 16:52:39 2011 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Fri Jun 24 16:52:39 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b3fa094a

Shorten Summary

(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)

---
 sci-biology/autoeditor/ChangeLog              |    7 +++++++
 sci-biology/autoeditor/autoeditor-1.20.ebuild |   25 +++++++++----------------
 2 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/sci-biology/autoeditor/ChangeLog b/sci-biology/autoeditor/ChangeLog
new file mode 100644
index 0000000..a952582
--- /dev/null
+++ b/sci-biology/autoeditor/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/autoeditor
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  24 Jun 2011; Justin Lecher <jlec@gentoo.org> autoeditor-1.20.ebuild:
+  Shorten Summary
+

diff --git a/sci-biology/autoeditor/autoeditor-1.20.ebuild b/sci-biology/autoeditor/autoeditor-1.20.ebuild
index bbe9908..f39f43d 100644
--- a/sci-biology/autoeditor/autoeditor-1.20.ebuild
+++ b/sci-biology/autoeditor/autoeditor-1.20.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -6,20 +6,21 @@ EAPI=3
 
 inherit eutils
 
-DESCRIPTION="AutoEditor is a program that can automatically correct discrepancies in a
-multiple alignment by reanalyzing the chromatograms of the discrepant bases."
+DESCRIPTION="Automatic correct of discrepancies in multiple sequence alignments"
 HOMEPAGE="http://sourceforge.net/apps/mediawiki/amos/index.php?title=AutoEditor"
-SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/autoEditor/autoEditor-1.20.tar.gz
-		test? ( ftp://ftp.cbcb.umd.edu/pub/software/autoEditor/autoEditor-1.20-sample.tar.gz )"
+SRC_URI="
+	ftp://ftp.cbcb.umd.edu/pub/software/autoEditor/autoEditor-1.20.tar.gz
+	test? ( ftp://ftp.cbcb.umd.edu/pub/software/autoEditor/autoEditor-1.20-sample.tar.gz )"
 
 LICENSE="Artistic"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE=""
 
-DEPEND=">=sci-libs/io_lib-1.8.11
-		sys-libs/zlib
-		sci-biology/tigr-foundation-libs"
+DEPEND="
+	>=sci-libs/io_lib-1.8.11
+	sci-biology/tigr-foundation-libs
+	sys-libs/zlib"
 RDEPEND="${DEPEND}"
 
 S="${WORKDIR}"/autoEditor-1.20
@@ -29,14 +30,6 @@ src_prepare(){
 	rm -rf TigrFoundation-2.0 || die "Failed to drop TigrFoundation-2.0/"
 }
 
-src_compile(){
-	emake || die
-}
-
-src_install(){
-	emake install DESTDIR="${D}" || die
-}
-
 # TODO:
 #  * QA Notice: Package has poor programming practices which may compile
 #  *            fine but exhibit random runtime failures.

[gentoo-commits] proj/sci:master commit in: sci-biology/autoeditor/

[Justin Lecher]

commit:     34064629ffa589001b3c102ba9c4d6d366f85c2b
Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>
AuthorDate: Mon Sep 21 19:43:41 2015 +0000
Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>
CommitDate: Mon Sep 21 19:43:41 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=34064629

sci-biology/autoeditor: Bump to EAPI 5

Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

 sci-biology/autoeditor/autoeditor-1.20.ebuild | 10 +++++-----
 sci-biology/autoeditor/metadata.xml           |  2 +-
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/sci-biology/autoeditor/autoeditor-1.20.ebuild b/sci-biology/autoeditor/autoeditor-1.20.ebuild
index 59868e6..1eda9ca 100644
--- a/sci-biology/autoeditor/autoeditor-1.20.ebuild
+++ b/sci-biology/autoeditor/autoeditor-1.20.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=3
+EAPI=5
 
 inherit eutils
 
@@ -15,7 +15,7 @@ SRC_URI="
 LICENSE="Artistic"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
+IUSE="test"
 
 DEPEND="
 	>=sci-libs/io_lib-1.8.11
@@ -26,7 +26,7 @@ RDEPEND="${DEPEND}"
 S="${WORKDIR}"/autoEditor-1.20
 
 src_prepare(){
-	epatch "${FILESDIR}"/Makefile.patch || die
+	epatch "${FILESDIR}"/Makefile.patch
 	rm -rf TigrFoundation-2.0 || die "Failed to drop TigrFoundation-2.0/"
 }
 
@@ -36,6 +36,6 @@ src_prepare(){
 #  * getConsQV.c:1051: warning: implicit declaration of function 'memset'
 
 src_test(){
-	make sample > sample.out || die
+	emake sample > sample.out
 	diff -u -w "${FILESDIR}"/sample_expected.out sample.out || die
 }

diff --git a/sci-biology/autoeditor/metadata.xml b/sci-biology/autoeditor/metadata.xml
index 5990f62..b0b877b 100644
--- a/sci-biology/autoeditor/metadata.xml
+++ b/sci-biology/autoeditor/metadata.xml
@@ -6,7 +6,7 @@
 		<email>mmokrejs@fold.natur.cuni.cz</email>
 		<name>Martin Mokrejs</name>
 	</maintainer>
-    <longdescription>AutoEditor is a program that can automatically correct discrepancies in a
+	<longdescription>AutoEditor is a program that can automatically correct discrepancies in a
         multiple alignment by reanalyzing the chromatograms of the discrepant bases.
         The input to AutoEditor is the multiple alignment in contig form, the sequence
         and quality values in FASTA format, and the base call positions in

[gentoo-commits] proj/sci:master commit in: sci-biology/autoeditor/

[Andrew Ammerlaan]

commit:     381191c17f2530cb0f315485857713090d0b359b
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Tue Jan 19 16:15:13 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Tue Jan 19 16:15:13 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=381191c1

sci-biology/autoeditor: add missing RESTRICT="!test? ( test )"

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/autoeditor/autoeditor-1.20.ebuild | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/sci-biology/autoeditor/autoeditor-1.20.ebuild b/sci-biology/autoeditor/autoeditor-1.20.ebuild
index 776133aa2..229058fe6 100644
--- a/sci-biology/autoeditor/autoeditor-1.20.ebuild
+++ b/sci-biology/autoeditor/autoeditor-1.20.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -15,6 +15,7 @@ LICENSE="Artistic"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="test"
+RESTRICT="!test? ( test )"
 
 DEPEND="
 	>=sci-libs/io_lib-1.8.11