From mboxrd@z Thu Jan 1 00:00:00 1970 Received: from pigeon.gentoo.org ([208.92.234.80] helo=lists.gentoo.org) by finch.gentoo.org with esmtp (Exim 4.60) (envelope-from ) id 1PuxIC-0001nN-95 for garchives@archives.gentoo.org; Thu, 03 Mar 2011 01:25:24 +0000 Received: from pigeon.gentoo.org (localhost [127.0.0.1]) by pigeon.gentoo.org (Postfix) with SMTP id D6BEEE0630; Thu, 3 Mar 2011 01:25:16 +0000 (UTC) Received: from smtp.gentoo.org (smtp.gentoo.org [140.211.166.183]) by pigeon.gentoo.org (Postfix) with ESMTP id A448BE0630 for ; Thu, 3 Mar 2011 01:25:16 +0000 (UTC) Received: from pelican.gentoo.org (unknown [66.219.59.40]) (using TLSv1 with cipher ADH-CAMELLIA256-SHA (256/256 bits)) (No client certificate requested) by smtp.gentoo.org (Postfix) with ESMTPS id 19D0C1B4024 for ; Thu, 3 Mar 2011 01:25:16 +0000 (UTC) Received: from localhost.localdomain (localhost [127.0.0.1]) by pelican.gentoo.org (Postfix) with ESMTP id 7A7CB8006A for ; Thu, 3 Mar 2011 01:25:15 +0000 (UTC) From: "Martin Mokrejs" To: gentoo-commits@lists.gentoo.org Content-type: text/plain; charset=UTF-8 Reply-To: gentoo-dev@lists.gentoo.org, "Martin Mokrejs" Message-ID: Subject: [gentoo-commits] proj/sci:master commit in: sci-biology/smalt-bin/ X-VCS-Repository: proj/sci X-VCS-Files: sci-biology/smalt-bin/metadata.xml sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild X-VCS-Directories: sci-biology/smalt-bin/ X-VCS-Committer: mmokrejs X-VCS-Committer-Name: Martin Mokrejs X-VCS-Revision: b1a3838988dbce2229be1acb41d6dc6bf8f5a5c2 Date: Thu, 3 Mar 2011 01:25:15 +0000 (UTC) Precedence: bulk List-Post: List-Help: List-Unsubscribe: List-Subscribe: List-Id: Gentoo Linux mail X-BeenThere: gentoo-commits@lists.gentoo.org Content-Transfer-Encoding: quoted-printable X-Archives-Salt: X-Archives-Hash: 89515ce06a25776f5dd94e159d240768 commit: b1a3838988dbce2229be1acb41d6dc6bf8f5a5c2 Author: Martin Mokrejs fold natur cuni cz> AuthorDate: Thu Mar 3 01:25:08 2011 +0000 Commit: Martin Mokrejs fold natur cuni cz> CommitDate: Thu Mar 3 01:25:08 2011 +0000 URL: http://git.overlays.gentoo.org/gitweb/?p=3Dproj/sci.git;a=3Dc= ommit;h=3Db1a38389 sci-biology/smalt-bin: an alternative to ssaha2 for even shorter reads (Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit) --- sci-biology/smalt-bin/metadata.xml | 9 +++++++ sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild | 33 ++++++++++++++++++++= ++++++ 2 files changed, 42 insertions(+), 0 deletions(-) diff --git a/sci-biology/smalt-bin/metadata.xml b/sci-biology/smalt-bin/m= etadata.xml new file mode 100644 index 0000000..07b5255 --- /dev/null +++ b/sci-biology/smalt-bin/metadata.xml @@ -0,0 +1,9 @@ + + + + sci-biology + + mmokrejs@fold.natur.cuni.cz + Martin Mokrejs + + diff --git a/sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild b/sci-biology/s= malt-bin/smalt-bin-0.5.0.ebuild new file mode 100644 index 0000000..1e13f95 --- /dev/null +++ b/sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=3D3 + +DESCRIPTION=3D"Pairwise sequence alignment mapping DNA reads onto genomi= c reference, better over SSAHA2." +HOMEPAGE=3D"http://www.sanger.ac.uk/resources/software/smalt/" +SRC_URI=3D"ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt/smalt-0.= 5.0.tgz" + +LICENSE=3D"GRL" +SLOT=3D"0" +KEYWORDS=3D"~x86 ~amd64" +IUSE=3D"" + +DEPEND=3D"" +RDEPEND=3D"${DEPEND}" + +S=3D"${WORKDIR}"/smalt-"${PV}" + +src_install(){ + if use x86; then + newbin smalt_i386 smalt || die + fi + if use amd64; then + newbin smalt_x86_64 smalt || die + fi + if use ia64; then + newbin smalt_ia64 || die + fi + dodoc NEWS smalt_manual.pdf || die + doman smalt.1 || die +}