[gentoo-commits] proj/sci:master commit in: sci-biology/smalt-bin/

["Martin Mokrejs" <mmokrejs@fold.natur.cuni.cz>]

commit:     b1a3838988dbce2229be1acb41d6dc6bf8f5a5c2
Author:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar  3 01:25:08 2011 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar  3 01:25:08 2011 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b1a38389

sci-biology/smalt-bin: an alternative to ssaha2 for even shorter reads

(Portage version: 2.1.9.28/git/Linux i686, unsigned Manifest commit)

---
 sci-biology/smalt-bin/metadata.xml           |    9 +++++++
 sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild |   33 ++++++++++++++++++++++++++
 2 files changed, 42 insertions(+), 0 deletions(-)

diff --git a/sci-biology/smalt-bin/metadata.xml b/sci-biology/smalt-bin/metadata.xml
new file mode 100644
index 0000000..07b5255
--- /dev/null
+++ b/sci-biology/smalt-bin/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-biology</herd>
+	<maintainer>
+		<email>mmokrejs@fold.natur.cuni.cz</email>
+		<name>Martin Mokrejs</name>
+	</maintainer>
+</pkgmetadata>

diff --git a/sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild b/sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild
new file mode 100644
index 0000000..1e13f95
--- /dev/null
+++ b/sci-biology/smalt-bin/smalt-bin-0.5.0.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=3
+
+DESCRIPTION="Pairwise sequence alignment mapping DNA reads onto genomic reference, better over SSAHA2."
+HOMEPAGE="http://www.sanger.ac.uk/resources/software/smalt/"
+SRC_URI="ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt/smalt-0.5.0.tgz"
+
+LICENSE="GRL"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/smalt-"${PV}"
+
+src_install(){
+	if use x86; then
+		newbin smalt_i386 smalt || die
+	fi
+	if use amd64; then
+		newbin smalt_x86_64 smalt || die
+	fi
+	if use ia64; then
+		newbin smalt_ia64 || die
+	fi
+	dodoc NEWS smalt_manual.pdf || die
+	doman smalt.1 || die
+}